Name

Roadmap Epigenomics Cell and Tissue DNA Accessibility Profiles Dataset

From Roadmap Epigenomics

DNA accessibility profiles for primary cell types and tissues

Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles Dataset

From Roadmap Epigenomics

DNA methylation profiles for primary cell types and tissues

ENCODE Histone Modification Site Profiles Dataset

From Encyclopedia of DNA Elements

histone modification profiles for cell lines

ENCODE Transcription Factor Binding Site Profiles Dataset

From Encyclopedia of DNA Elements

transcription factor binding site profiles for cell lines

ENCODE Transcription Factor Targets Dataset

From Encyclopedia of DNA Elements

target genes of transcription factors from transcription factor binding site profiles

LIG4 Gene

ligase IV, DNA, ATP-dependent

The protein encoded by this gene is a DNA ligase that joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. This protein is essential for V(D)J recombination and DNA double-strand break (DSB) repair through nonhomologous end joining (NHEJ). This protein forms a complex with the X-ray repair cross complementing protein 4 (XRCC4), and further interacts with the DNA-dependent protein kinase (DNA-PK). Both XRCC4 and DNA-PK are known to be required for NHEJ. The crystal structure of the complex formed by this protein and XRCC4 has been resolved. Defects in this gene are the cause of LIG4 syndrome. Alternatively spliced transcript variants encoding the same protein have been observed. [provided by RefSeq, Jul 2008]

LIG1 Gene

ligase I, DNA, ATP-dependent

This gene encodes a member of the ATP-dependent DNA ligase protein family. The encoded protein functions in DNA replication, recombination, and the base excision repair process. Mutations in this gene that lead to DNA ligase I deficiency result in immunodeficiency and increased sensitivity to DNA-damaging agents. Disruption of this gene may also be associated with a variety of cancers. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

LIG3 Gene

ligase III, DNA, ATP-dependent

This gene is a member of the DNA ligase family. Each member of this family encodes a protein that catalyzes the joining of DNA ends but they each have a distinct role in DNA metabolism. The protein encoded by this gene is involved in excision repair and is located in both the mitochondria and nucleus, with translation initiation from the upstream start codon allowing for transport to the mitochondria and translation initiation from a downstream start codon allowing for transport to the nucleus. Additionally, alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008]

LTN1 Gene

listerin E3 ubiquitin protein ligase 1

Like most RING finger proteins, LTN1 functions as an E3 ubiquitin ligase (Chu et al., 2009 [PubMed 19196968]).[supplied by OMIM, Nov 2010]

ITCH Gene

itchy E3 ubiquitin protein ligase

This gene encodes a member of the Nedd4 family of HECT domain E3 ubiquitin ligases. HECT domain E3 ubiquitin ligases transfer ubiquitin from E2 ubiquitin-conjugating enzymes to protein substrates, thus targeting specific proteins for lysosomal degradation. The encoded protein plays a role in multiple cellular processes including erythroid and lymphoid cell differentiation and the regulation of immune responses. Mutations in this gene are a cause of syndromic multisystem autoimmune disease. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Mar 2012]

LOC100533945 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

RFWD2P1 Gene

ring finger and WD repeat domain 2, E3 ubiquitin protein ligase pseudogene 1

RFFL Gene

ring finger and FYVE-like domain containing E3 ubiquitin protein ligase

MARCH10 Gene

membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase

MARCH10 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH enzymes add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments (Morokuma et al., 2007 [PubMed 17604280]).[supplied by OMIM, Apr 2010]

CBLL1 Gene

Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase

This gene encodes an E3 ubiquitin-ligase for the E-cadherin complex and mediates its ubiquitination, endocytosis, and degradation in the lysosomes. The encoded protein contains a RING-finger domain and is also thought to have a role in control of cell proliferation. A related pseudogene has been identified on chromosome X. Alternative splicing results in a non-coding transcript variant. [provided by RefSeq, Aug 2011]

WWP2 Gene

WW domain containing E3 ubiquitin protein ligase 2

This gene encodes a member of the Nedd4 family of E3 ligases, which play an important role in protein ubiquitination. The encoded protein contains four WW domains and may play a role in multiple processes including chondrogenesis and the regulation of oncogenic signaling pathways via interactions with Smad proteins and the tumor suppressor PTEN. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the long arm of chromosome 10. [provided by RefSeq, Jul 2012]

WWP1 Gene

WW domain containing E3 ubiquitin protein ligase 1

WW domain-containing proteins are found in all eukaryotes and play an important role in the regulation of a wide variety of cellular functions such as protein degradation, transcription, and RNA splicing. This gene encodes a protein which contains 4 tandem WW domains and a HECT (homologous to the E6-associated protein carboxyl terminus) domain. The encoded protein belongs to a family of NEDD4-like proteins, which are E3 ubiquitin-ligase molecules and regulate key trafficking decisions, including targeting of proteins to proteosomes or lysosomes. Alternative splicing of this gene generates at least 6 transcript variants; however, the full length nature of these transcripts has not been defined. [provided by RefSeq, Jul 2008]

GLUL Gene

glutamate-ammonia ligase

The protein encoded by this gene belongs to the glutamine synthetase family. It catalyzes the synthesis of glutamine from glutamate and ammonia in an ATP-dependent reaction. This protein plays a role in ammonia and glutamate detoxification, acid-base homeostasis, cell signaling, and cell proliferation. Glutamine is an abundant amino acid, and is important to the biosynthesis of several amino acids, pyrimidines, and purines. Mutations in this gene are associated with congenital glutamine deficiency, and overexpression of this gene was observed in some primary liver cancer samples. There are six pseudogenes of this gene found on chromosomes 2, 5, 9, 11, and 12. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]

HACE1 Gene

HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1

LOC101927751 Gene

E3 ubiquitin-protein ligase RING1-like

LOC644909 Gene

ligand of numb-protein X 1, E3 ubiquitin protein ligase pseudogene

BTRCP1 Gene

beta-transducin repeat containing E3 ubiquitin protein ligase pseudogene 1

HERC1 Gene

HECT and RLD domain containing E3 ubiquitin protein ligase family member 1

This gen encodes a member of the HERC protein family. This protein stimulates guanine nucleotide exchange on ARF1 and Rab proteins. This protein may be involved in membrane transport processes. [provided by RefSeq, Mar 2012]

HERC3 Gene

HECT and RLD domain containing E3 ubiquitin protein ligase 3

This gene encodes a member the HERC ubiquitin ligase family. The encoded protein is located in the cytosol and binds ubiquitin via a HECT domain. Mutations in this gene have been associated with colorectal and gastric carcinomas. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Oct 2012]

HERC2 Gene

HECT and RLD domain containing E3 ubiquitin protein ligase 2

This gene belongs to the HERC gene family that encodes a group of unusually large proteins, which contain multiple structural domains. All members have at least 1 copy of an N-terminal region showing homology to the cell cycle regulator RCC1 and a C-terminal HECT (homologous to E6-AP C terminus) domain found in a number of E3 ubiquitin protein ligases. Genetic variations in this gene are associated with skin/hair/eye pigmentation variability. Multiple pseudogenes of this gene are located on chromosomes 15 and 16. [provided by RefSeq, Mar 2012]

HERC5 Gene

HECT and RLD domain containing E3 ubiquitin protein ligase 5

This gene is a member of the HERC family of ubiquitin ligases and encodes a protein with a HECT domain and five RCC1 repeats. Pro-inflammatory cytokines upregulate expression of this gene in endothelial cells. The protein localizes to the cytoplasm and perinuclear region and functions as an interferon-induced E3 protein ligase that mediates ISGylation of protein targets. The gene lies in a cluster of HERC family genes on chromosome 4. [provided by RefSeq, Jul 2008]

HERC4 Gene

HECT and RLD domain containing E3 ubiquitin protein ligase 4

HERC4 belongs to the HERC family of ubiquitin ligases, all of which contain a HECT domain and at least 1 RCC1 (MIM 179710)-like domain (RLD). The 350-amino acid HECT domain is predicted to catalyze the formation of a thioester with ubiquitin before transferring it to a substrate, and the RLD is predicted to act as a guanine nucleotide exchange factor for small G proteins (Hochrainer et al., 2005 [PubMed 15676274]).[supplied by OMIM, Mar 2008]

HERC6 Gene

HECT and RLD domain containing E3 ubiquitin protein ligase family member 6

HERC6 belongs to the HERC family of ubiquitin ligases, all of which contain a HECT domain and at least 1 RCC1 (MIM 179710)-like domain (RLD). The 350-amino acid HECT domain is predicted to catalyze the formation of a thioester with ubiquitin before transferring it to a substrate, and the RLD is predicted to act as a guanine nucleotide exchange factor for small G proteins (Hochrainer et al., 2005 [PubMed 15676274]).[supplied by OMIM, Mar 2008]

MYCBP2 Gene

MYC binding protein 2, E3 ubiquitin protein ligase

LOC100533944 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

LOC100533948 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

LOC101060191 Gene

E3 ubiquitin-protein ligase RING2-like

RNF128 Gene

ring finger protein 128, E3 ubiquitin protein ligase

The protein encoded by this gene is a type I transmembrane protein that localizes to the endocytic pathway. This protein contains a RING zinc-finger motif and has been shown to possess E3 ubiquitin ligase activity. Expression of this gene in retrovirally transduced T cell hybridoma significantly inhibits activation-induced IL2 and IL4 cytokine production. Induced expression of this gene was observed in anergic CD4(+) T cells, which suggested a role in the induction of anergic phenotype. Alternatively spliced transcript variants encoding distinct isoforms have been reported. [provided by RefSeq, Jul 2008]

RNF125 Gene

ring finger protein 125, E3 ubiquitin protein ligase

This gene encodes a novel E3 ubiquitin ligase that contains a RING finger domain in the N-terminus and three zinc-binding and one ubiquitin-interacting motif in the C-terminus. As a result of myristoylation, this protein associates with membranes and is primarily localized to intracellular membrane systems. The encoded protein may function as a positive regulator in the T-cell receptor signaling pathway. [provided by RefSeq, Mar 2012]

SIAH1 Gene

siah E3 ubiquitin protein ligase 1

This gene encodes a protein that is a member of the seven in absentia homolog (SIAH) family. The protein is an E3 ligase and is involved in ubiquitination and proteasome-mediated degradation of specific proteins. The activity of this ubiquitin ligase has been implicated in the development of certain forms of Parkinson's disease, the regulation of the cellular response to hypoxia and induction of apoptosis. Alternative splicing results in several additional transcript variants, some encoding different isoforms and others that have not been fully characterized. [provided by RefSeq, Jul 2008]

SIAH2 Gene

siah E3 ubiquitin protein ligase 2

This gene encodes a protein that is a member of the seven in absentia homolog (SIAH) family. The protein is an E3 ligase and is involved in ubiquitination and proteasome-mediated degradation of specific proteins. The activity of this ubiquitin ligase has been implicated in regulating cellular response to hypoxia. [provided by RefSeq, Jul 2008]

SIAH3 Gene

siah E3 ubiquitin protein ligase family member 3

LOC100288437 Gene

ring finger and WD repeat domain 2, E3 ubiquitin protein ligase pseudogene

VHL Gene

von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase

Von Hippel-Lindau syndrome (VHL) is a dominantly inherited familial cancer syndrome predisposing to a variety of malignant and benign tumors. A germline mutation of this gene is the basis of familial inheritance of VHL syndrome. The protein encoded by this gene is a component of the protein complex that includes elongin B, elongin C, and cullin-2, and possesses ubiquitin ligase E3 activity. This protein is involved in the ubiquitination and degradation of hypoxia-inducible-factor (HIF), which is a transcription factor that plays a central role in the regulation of gene expression by oxygen. RNA polymerase II subunit POLR2G/RPB7 is also reported to be a target of this protein. Alternatively spliced transcript variants encoding distinct isoforms have been observed. [provided by RefSeq, Jul 2008]

LOC100419574 Gene

HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene

UBE3B Gene

ubiquitin protein ligase E3B

The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: E1 ubiquitin-activating enzymes, E2 ubiquitin-conjugating enzymes, and E3 ubiquitin-protein ligases. This gene encodes a member of the E3 ubiquitin-conjugating enzyme family which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme and transfers the ubiquitin to the targeted substrates. A HECT (homology to E6-AP C-terminus) domain in the C-terminus of the longer isoform of this protein is the catalytic site of ubiquitin transfer and forms a complex with E2 conjugases. Shorter isoforms of this protein which lack the C-terminal HECT domain are therefore unlikely to bind E2 enzymes. Alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2012]

UBE3C Gene

ubiquitin protein ligase E3C

UBE3A Gene

ubiquitin protein ligase E3A

This gene encodes an E3 ubiquitin-protein ligase, part of the ubiquitin protein degradation system. This imprinted gene is maternally expressed in brain and biallelically expressed in other tissues. Maternally inherited deletion of this gene causes Angelman Syndrome, characterized by severe motor and intellectual retardation, ataxia, hypotonia, epilepsy, absence of speech, and characteristic facies. The protein also interacts with the E6 protein of human papillomavirus types 16 and 18, resulting in ubiquitination and proteolysis of tumor protein p53. Alternative splicing of this gene results in three transcript variants encoding three isoforms with different N-termini. Additional transcript variants have been described, but their full length nature has not been determined. [provided by RefSeq, Jul 2008]

UBE3D Gene

ubiquitin protein ligase E3D

UHRF2 Gene

ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase

This gene encodes a nuclear protein which is involved in cell-cycle regulation. The encoded protein is a ubiquitin-ligase capable of ubiquinating PCNP (PEST-containing nuclear protein), and together they may play a role in tumorigenesis. The encoded protein contains an NIRF_N domain, a PHD finger, a set- and ring-associated (SRA) domain, and a RING finger domain and several of these domains have been shown to be essential for the regulation of cell proliferation. This protein may also have a role in intranuclear degradation of polyglutamine aggregates. Alternative splicing results in multiple transcript variants some of which are non-protein coding. [provided by RefSeq, Feb 2012]

ZNRF1 Gene

zinc and ring finger 1, E3 ubiquitin protein ligase

This gene encodes an E3 ubiquitin-protein ligase that plays a role in neural-cell differentiation. Overexpression of this gene causes neurite-like elongation. The encoded protein contains both a zinc finger and a RING finger motif and is localized in the endosome/lysosome compartment, indicating that it may be involved in ubiquitin-mediated protein modification, and in synaptic vessicle membranes in neurons. [provided by RefSeq, Feb 2012]

ZNRF2 Gene

zinc and ring finger 2, E3 ubiquitin protein ligase

RNF138P1 Gene

ring finger protein 138, E3 ubiquitin protein ligase pseudogene 1

TTLL11 Gene

tubulin tyrosine ligase-like family member 11

TTLL10 Gene

tubulin tyrosine ligase-like family member 10

TTLL12 Gene

tubulin tyrosine ligase-like family member 12

MGRN1 Gene

mahogunin ring finger 1, E3 ubiquitin protein ligase

Mahogunin (MGRN1) is a C3HC4 RING-containing protein with E3 ubiquitin ligase activity in vitro.[supplied by OMIM, Apr 2004]

CHFR Gene

checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase

This gene encodes an E3 ubiquitin-protein ligase required for the maintenance of the antephase checkpoint that regulates cell cycle entry into mitosis and, therefore, may play a key role in cell cycle progression and tumorigenesis. The encoded protein has an N-terminal forkhead-associated domain, a central RING-finger domain, and a cysteine-rich C-terminal region. Alternatively spliced transcript variants that encode different protein isoforms have been described. [provided by RefSeq, Mar 2014]

RNF19A Gene

ring finger protein 19A, RBR E3 ubiquitin protein ligase

This gene encodes a member of the ring between ring fingers (RBR) protein family, and the encoded protein contains two RING-finger motifs and an in between RING fingers motif. This protein is an E3 ubiquitin ligase that is localized to Lewy bodies, and ubiquitylates synphilin-1, which is an interacting protein of alpha synuclein in neurons. The encoded protein may be involved in amyotrophic lateral sclerosis and Parkinson's disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

LOC100421870 Gene

WW domain containing E3 ubiquitin protein ligase 2 pseudogene

ARIH2 Gene

ariadne RBR E3 ubiquitin protein ligase 2

ARIH1 Gene

ariadne RBR E3 ubiquitin protein ligase 1

UBE3AP1 Gene

ubiquitin protein ligase E3A pseudogene 1

UBE3AP2 Gene

ubiquitin protein ligase E3A pseudogene 2

AMFR Gene

autocrine motility factor receptor, E3 ubiquitin protein ligase

This locus encodes a glycosylated transmembrane receptor. Its ligand, autocrine motility factor, is a tumor motility-stimulating protein secreted by tumor cells. The encoded receptor is also a member of the E3 ubiquitin ligase family of proteins. It catalyzes ubiquitination and endoplasmic reticulum-associated degradation of specific proteins. [provided by RefSeq, Feb 2012]

LOC100128122 Gene

Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase pseudogene

SKP2 Gene

S-phase kinase-associated protein 2, E3 ubiquitin protein ligase

This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbls class; in addition to an F-box, this protein contains 10 tandem leucine-rich repeats. This protein is an essential element of the cyclin A-CDK2 S-phase kinase. It specifically recognizes phosphorylated cyclin-dependent kinase inhibitor 1B (CDKN1B, also referred to as p27 or KIP1) predominantly in S phase and interacts with S-phase kinase-associated protein 1 (SKP1 or p19). In addition, this gene is established as a protooncogene causally involved in the pathogenesis of lymphomas. Alternative splicing of this gene generates three transcript variants encoding different isoforms. [provided by RefSeq, Jul 2011]

LOC100996851 Gene

E3 ubiquitin-protein ligase XIAP pseudogene

NEURL1B Gene

neuralized E3 ubiquitin protein ligase 1B

HECW1 Gene

HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1

HECW2 Gene

HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2

XIAP Gene

X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase

This gene encodes a protein that belongs to a family of apoptotic suppressor proteins. Members of this family share a conserved motif termed, baculovirus IAP repeat, which is necessary for their anti-apoptotic function. This protein functions through binding to tumor necrosis factor receptor-associated factors TRAF1 and TRAF2 and inhibits apoptosis induced by menadione, a potent inducer of free radicals, and interleukin 1-beta converting enzyme. This protein also inhibits at least two members of the caspase family of cell-death proteases, caspase-3 and caspase-7. Mutations in this gene are the cause of X-linked lymphoproliferative syndrome. Alternate splicing results in multiple transcript variants. Pseudogenes of this gene are found on chromosomes 2 and 11.[provided by RefSeq, Feb 2011]

LOC102723743 Gene

E3 ubiquitin-protein ligase RNF12-B-like

SUCLA2P1 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene 1

SUCLA2P2 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene 2

SUCLA2P3 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene 3

UBR3 Gene

ubiquitin protein ligase E3 component n-recognin 3 (putative)

UBR2 Gene

ubiquitin protein ligase E3 component n-recognin 2

This gene encodes an E3 ubiquitin ligase of the N-end rule proteolytic pathway that targets proteins with destabilizing N-terminal residues for polyubiquitylation and proteasome-mediated degradation. Alternative splicing results in multiple transcript variants.[provided by RefSeq, May 2010]

UBR1 Gene

ubiquitin protein ligase E3 component n-recognin 1

The N-end rule pathway is one proteolytic pathway of the ubiquitin system. The recognition component of this pathway, encoded by this gene, binds to a destabilizing N-terminal residue of a substrate protein and participates in the formation of a substrate-linked multiubiquitin chain. This leads to the eventual degradation of the substrate protein. The protein described in this record has a RING-type zinc finger and a UBR-type zinc finger. Mutations in this gene have been associated with Johanson-Blizzard syndrome. [provided by RefSeq, Jul 2008]

UBR7 Gene

ubiquitin protein ligase E3 component n-recognin 7 (putative)

UBR5 Gene

ubiquitin protein ligase E3 component n-recognin 5

This gene encodes a progestin-induced protein, which belongs to the HECT (homology to E6-AP carboxyl terminus) family. The HECT family proteins function as E3 ubiquitin-protein ligases, targeting specific proteins for ubiquitin-mediated proteolysis. This gene is localized to chromosome 8q22 which is disrupted in a variety of cancers. This gene potentially has a role in regulation of cell proliferation or differentiation. [provided by RefSeq, Jul 2008]

UBR4 Gene

ubiquitin protein ligase E3 component n-recognin 4

The protein encoded by this gene is an E3 ubiquitin-protein ligase that interacts with the retinoblastoma-associated protein in the nucleus and with calcium-bound calmodulin in the cytoplasm. The encoded protein appears to be a cytoskeletal component in the cytoplasm and part of the chromatin scaffold in the nucleus. In addition, this protein is a target of the human papillomavirus type 16 E7 oncoprotein. [provided by RefSeq, Aug 2010]

TTLL13P Gene

tubulin tyrosine ligase-like family member 13, pseudogene

NEDD4L Gene

neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase

This gene encodes a member of the Nedd4 family of HECT domain E3 ubiquitin ligases. HECT domain E3 ubiquitin ligases transfer ubiquitin from E2 ubiquitin-conjugating enzymes to protein substrates, thus targeting specific proteins for lysosomal degradation. The encoded protein mediates the ubiquitination of multiple target substrates and plays a critical role in epithelial sodium transport by regulating the cell surface expression of the epithelial sodium channel, ENaC. Single nucleotide polymorphisms in this gene may be associated with essential hypertension. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Mar 2012]

RBX1 Gene

ring-box 1, E3 ubiquitin protein ligase

This locus encodes a RING finger-like domain-containing protein. The encoded protein interacts with cullin proteins and likely plays a role in ubiquitination processes necessary for cell cycle progression. This protein may also affect protein turnover. Related pseudogenes exist on chromosomes 2 and 5.[provided by RefSeq, Sep 2010]

LOC100421248 Gene

siah E3 ubiquitin protein ligase family member 3 pseudogene

LOC101929744 Gene

phosphopantothenate--cysteine ligase pseudogene

TRIM71 Gene

tripartite motif containing 71, E3 ubiquitin protein ligase

TOPORS Gene

topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase

This gene encodes a nuclear protein which is serine and arginine rich, and contains a RING-type zinc finger domain. It is highly expressed in the testis, and functions as an ubiquitin-protein E3 ligase. Mutations in this gene are associated with retinitis pigmentosa type 31. Alternatively spliced transcript variants, encoding different isoforms, have been observed for this locus. [provided by RefSeq, Sep 2010]

TRAF6 Gene

TNF receptor-associated factor 6, E3 ubiquitin protein ligase

The protein encoded by this gene is a member of the TNF receptor associated factor (TRAF) protein family. TRAF proteins are associated with, and mediate signal transduction from, members of the TNF receptor superfamily. This protein mediates signaling from members of the TNF receptor superfamily as well as the Toll/IL-1 family. Signals from receptors such as CD40, TNFSF11/RANCE and IL-1 have been shown to be mediated by this protein. This protein also interacts with various protein kinases including IRAK1/IRAK, SRC and PKCzeta, which provides a link between distinct signaling pathways. This protein functions as a signal transducer in the NF-kappaB pathway that activates IkappaB kinase (IKK) in response to proinflammatory cytokines. The interaction of this protein with UBE2N/UBC13, and UBE2V1/UEV1A, which are ubiquitin conjugating enzymes catalyzing the formation of polyubiquitin chains, has been found to be required for IKK activation by this protein. This protein also interacts with the transforming growth factor (TGF) beta receptor complex and is required for Smad-independent activation of the JNK and p38 kinases. This protein has an amino terminal RING domain which is followed by four zinc-finger motifs, a central coiled-coil region and a highly conserved carboxyl terminal domain, known as the TRAF-C domain. Two alternatively spliced transcript variants, encoding an identical protein, have been reported. [provided by RefSeq, Feb 2012]

TRAF7 Gene

TNF receptor-associated factor 7, E3 ubiquitin protein ligase

Tumor necrosis factor (TNF; see MIM 191160) receptor-associated factors, such as TRAF7, are signal transducers for members of the TNF receptor superfamily (see MIM 191190). TRAFs are composed of an N-terminal cysteine/histidine-rich region containing zinc RING and/or zinc finger motifs; a coiled-coil (leucine zipper) motif; and a homologous region that defines the TRAF family, the TRAF domain, which is involved in self-association and receptor binding.[supplied by OMIM, Apr 2004]

RNF138P2 Gene

ring finger protein 138, E3 ubiquitin protein ligase pseudogene 2

MAP3K1 Gene

mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase

The protein encoded by this gene is a serine/threonine kinase and is part of some signal transduction cascades, including the ERK and JNK kinase pathways as well as the NF-kappa-B pathway. The encoded protein is activated by autophosphorylation and requires magnesium as a cofactor in phosphorylating other proteins. This protein has E3 ligase activity conferred by a plant homeodomain (PHD) in its N-terminus and phospho-kinase activity conferred by a kinase domain in its C-terminus. [provided by RefSeq, Mar 2012]

LOC100631354 Gene

SMAD specific E3 ubiquitin protein ligase 2 pseudogene

WWP1P1 Gene

WW domain containing E3 ubiquitin protein ligase 1 pseudogene 1

CBL Gene

Cbl proto-oncogene, E3 ubiquitin protein ligase

This gene is a proto-oncogene that encodes a RING finger E3 ubiquitin ligase. The encoded protein is one of the enzymes required for targeting substrates for degradation by the proteasome. This protein mediates the transfer of ubiquitin from ubiquitin conjugating enzymes (E2) to specific substrates. This protein also contains an N-terminal phosphotyrosine binding domain that allows it to interact with numerous tyrosine-phosphorylated substrates and target them for proteasome degradation. As such it functions as a negative regulator of many signal transduction pathways. This gene has been found to be mutated or translocated in many cancers including acute myeloid leukaemia. Mutations in this gene are also the cause of Noonan syndrome-like disorder. [provided by RefSeq, Mar 2012]

RNF34 Gene

ring finger protein 34, E3 ubiquitin protein ligase

The protein encoded by this gene contains a RINF finger, a motif known to be involved in protein-protein and protein-DNA interactions. This protein interacts with DNAJA3/hTid-1, which is a DnaJ protein reported to function as a modulator of apoptosis. Overexpression of this gene in Hela cells was shown to confer the resistance to TNF-alpha induced apoptosis, suggesting an anti-apoptotic function of this protein. This protein can be cleaved by caspase-3 during the induction of apoptosis. This protein also targets p53 and phospho-p53 for degradation. Alternatively splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Feb 2012]

LOC100130500 Gene

S-phase kinase-associated protein 2, E3 ubiquitin protein ligase pseudogene

LOC100533947 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

LOC100533946 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

RNF138 Gene

ring finger protein 138, E3 ubiquitin protein ligase

The protein encoded by this gene contains a RING finger, a motif present in a variety of functionally distinct proteins and known to be involved in protein-DNA and protein-protein interactions. Alternatively spliced transcript variants encoding distinct isoforms have been observed. [provided by RefSeq, Jul 2008]

RNF8 Gene

ring finger protein 8, E3 ubiquitin protein ligase

The protein encoded by this gene contains a RING finger motif and an FHA domain. This protein has been shown to interact with several class II ubiquitin-conjugating enzymes (E2), including UBE2E1/UBCH6, UBE2E2, and UBE2E3, and may act as an ubiquitin ligase (E3) in the ubiquitination of certain nuclear proteins. This protein is also known to play a role in the DNA damage response and depletion of this protein causes cell growth inhibition and cell cycle arrest. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2012]

RNF5 Gene

ring finger protein 5, E3 ubiquitin protein ligase

The protein encoded by this gene contains a RING finger, which is a motif known to be involved in protein-protein interactions. This protein is a membrane-bound ubiquitin ligase. It can regulate cell motility by targeting paxillin ubiquitination and altering the distribution and localization of paxillin in cytoplasm and cell focal adhesions. [provided by RefSeq, Jul 2008]

LOC100420509 Gene

X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase pseudogene

TMEM129 Gene

transmembrane protein 129, E3 ubiquitin protein ligase

LOC100500934 Gene

ring-box 1, E3 ubiquitin protein ligase pseudogene

RNF5P1 Gene

ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1

SMURF1 Gene

SMAD specific E3 ubiquitin protein ligase 1

This gene encodes a ubiquitin ligase that is specific for receptor-regulated SMAD proteins in the bone morphogenetic protein (BMP) pathway. This protein plays a key roll in the regulation of cell motility, cell signalling, and cell polarity. Alternative splicing results in multiple transcript variants encoding different isoforms.[provided by RefSeq, Dec 2010]

SMURF2 Gene

SMAD specific E3 ubiquitin protein ligase 2

MTHFS Gene

5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)

The protein encoded by this gene is an enzyme that catalyzes the conversion of 5-formyltetrahydrofolate to 5,10-methenyltetrahydrofolate, a precursor of reduced folates involved in 1-carbon metabolism. An increased activity of the encoded protein can result in an increased folate turnover rate and folate depletion. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jun 2011]

TTLL5 Gene

tubulin tyrosine ligase-like family member 5

This gene encodes a member of the tubulin tyrosine ligase like protein family. This protein interacts with two glucocorticoid receptor coactivators, transcriptional intermediary factor 2 and steroid receptor coactivator 1. This protein may function as a coregulator of glucocorticoid receptor mediated gene induction and repression. This protein may also function as an alpha tubulin polyglutamylase.[provided by RefSeq, Feb 2010]

TTLL4 Gene

tubulin tyrosine ligase-like family member 4

TTLL7 Gene

tubulin tyrosine ligase-like family member 7

TTLL6 Gene

tubulin tyrosine ligase-like family member 6

TTLL1 Gene

tubulin tyrosine ligase-like family member 1

TTLL3 Gene

tubulin tyrosine ligase-like family member 3

TTLL2 Gene

tubulin tyrosine ligase-like family member 2

TTLL9 Gene

tubulin tyrosine ligase-like family member 9

TTLL8 Gene

tubulin tyrosine ligase-like family member 8

MDM2 Gene

MDM2 proto-oncogene, E3 ubiquitin protein ligase

This gene encodes a nuclear-localized E3 ubiquitin ligase. The encoded protein can promote tumor formation by targeting tumor suppressor proteins, such as p53, for proteasomal degradation. This gene is itself transcriptionally-regulated by p53. Overexpression or amplification of this locus is detected in a variety of different cancers. There is a pseudogene for this gene on chromosome 2. Alternative splicing results in a multitude of transcript variants, many of which may be expressed only in tumor cells. [provided by RefSeq, Jun 2013]

LOC100418630 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

FBXW7 Gene

F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase

This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene was previously referred to as FBX30, and belongs to the Fbws class; in addition to an F-box, this protein contains 7 tandem WD40 repeats. This protein binds directly to cyclin E and probably targets cyclin E for ubiquitin-mediated degradation. Mutations in this gene are detected in ovarian and breast cancer cell lines, implicating the gene's potential role in the pathogenesis of human cancers. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2012]

G2E3 Gene

G2/M-phase specific E3 ubiquitin protein ligase

DTX3L Gene

deltex 3 like, E3 ubiquitin ligase

DTX3L functions as an E3 ubiquitin ligase (Takeyama et al., 2003 [PubMed 12670957]).[supplied by OMIM, Nov 2009]

TRIM72 Gene

tripartite motif containing 72, E3 ubiquitin protein ligase

HECTD2 Gene

HECT domain containing E3 ubiquitin protein ligase 2

HECTD3 Gene

HECT domain containing E3 ubiquitin protein ligase 3

The protein encoded by this gene transfers ubiquitin from an E2 ubiquitin-conjugating enzyme to targeted substrates, leading to the degradation of those substrates. The encoded protein has been shown to transfer ubiquitin to TRIOBP to facilitate cell cycle progression, and to STX8. [provided by RefSeq, Dec 2012]

HECTD4 Gene

HECT domain containing E3 ubiquitin protein ligase 4

LOC391465 Gene

STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase pseudogene

CBLC Gene

Cbl proto-oncogene C, E3 ubiquitin protein ligase

This gene encodes a member of the Cbl family of E3 ubiquitin ligases. Cbl proteins play important roles in cell signaling through the ubiquitination and subsequent downregulation of tyrosine kinases. Expression of this gene may be restricted to epithelial cells, and alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2012]

CBLB Gene

Cbl proto-oncogene B, E3 ubiquitin protein ligase

HECTD1 Gene

HECT domain containing E3 ubiquitin protein ligase 1

TTL Gene

tubulin tyrosine ligase

TTL is a cytosolic enzyme involved in the posttranslational modification of alpha-tubulin (see MIM 602529). Alpha-tubulin within assembled microtubules is detyrosinated over time at the C terminus. After microtubule disassembly, TTL restores the tyrosine residues and consequently participates in a cycle of tubulin detyrosination and tyrosination (Erck et al., 2003 [PubMed 14571137]).[supplied by OMIM, Mar 2008]

PJA1 Gene

praja ring finger 1, E3 ubiquitin protein ligase

This gene encodes an enzyme that has E2-dependent E3 ubiquitin-protein ligase activity. This enzyme belongs to a class of ubiquitin ligases that include a RING finger motif, and it can interact with the E2 ubiquitin-conjugating enzyme UbcH5B. This gene is located in an area of chromosome X where several X-linked mental retardation disorders have been associated, and it has also been found as part of a contiguous gene deletion associated with craniofrontonasal syndrome, though a direct link to any disorder has yet to be demonstrated. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2010]

PJA2 Gene

praja ring finger 2, E3 ubiquitin protein ligase

RNF41 Gene

ring finger protein 41, E3 ubiquitin protein ligase

This gene encodes an E3 ubiquitin ligase. The encoded protein plays a role in type 1 cytokine receptor signaling by controlling the balance between JAK2-associated cytokine receptor degradation and ectodomain shedding. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2011]

MARCH4 Gene

membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase

MARCH4 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH enzymes add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments. MARCH4 reduces surface accumulation of several membrane glycoproteins by directing them to the endosomal compartment (Bartee et al., 2004 [PubMed 14722266]).[supplied by OMIM, Apr 2010]

MARCH7 Gene

membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase

MARCH7 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH proteins add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments (Bartee et al., 2004 [PubMed 14722266]).[supplied by OMIM, Mar 2010]

MARCH6 Gene

membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase

This gene encodes a member of a family of membrane-associated E3 ubiquitin ligases containing RING-CH-type zinc finger motifs. Ubiquitination of type II deiodinase by the encoded protein is an important regulatory step in thyroid hormone signalling. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jul 2012]

MARCH1 Gene

membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase

MARCH1 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH proteins add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments. MARCH1 downregulates the surface expression of major histocompatibility complex (MHC) class II molecules (see MIM 142880) and other glycoproteins by directing them to the late endosomal/lysosomal compartment (Bartee et al., 2004 [PubMed 14722266]; Thibodeau et al., 2008 [PubMed 18389477]; De Gassart et al., 2008 [PubMed 18305173]).[supplied by OMIM, Mar 2010]

MARCH3 Gene

membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase

This gene encodes a member of the membrane-associated RING-CH (MARCH) family. The encoded protein is an E3 ubiquitin-protein ligase that may be involved in regulation of the endosomal transport pathway. [provided by RefSeq, Mar 2013]

MARCH2 Gene

membrane-associated ring finger (C3HC4) 2, E3 ubiquitin protein ligase

MARCH2 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH enzymes add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments. MARCH2 reduces surface accumulation of several glycoproteins and appears to regulate early endosome-to-trans-Golgi network (TGN) trafficking (Bartee et al., 2004 [PubMed 14722266]; Nakamura et al., 2005 [PubMed 15689499]).[supplied by OMIM, Mar 2010]

MARCH8 Gene

membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase

MARCH8 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH enzymes add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments. MARCH8 induces the internalization of several membrane glycoproteins (Goto et al., 2003 [PubMed 12582153]; Bartee et al., 2004 [PubMed 14722266]).[supplied by OMIM, Apr 2010]

RCHY1 Gene

ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase

The protein encoded by this gene has ubiquitin ligase activity. It mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including tumor protein 53, histone deacetylase 1, and cyclin-dependent kinase inhibitor 1B, thus regulating their levels and cell cycle progression. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Jun 2013]

RNF168 Gene

ring finger protein 168, E3 ubiquitin protein ligase

This gene encodes an E3 ubiquitin ligase protein that contains a RING finger, a motif present in a variety of functionally distinct proteins and known to be involved in protein-DNA and protein-protein interactions. The protein is involved in DNA double-strand break (DSB) repair. Mutations in this gene result in Riddle syndrome. [provided by RefSeq, Sep 2011]

AREL1 Gene

apoptosis resistant E3 ubiquitin protein ligase 1

HUWE1 Gene

HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase

This gene encodes a protein containing a C-terminal HECT (E6AP type E3 ubiquitin protein ligase) domain that functions as an E3 ubiquitin ligase. The encoded protein is required for the ubiquitination and subsequent degradation of the anti-apoptotic protein Mcl1 (myeloid cell leukemia sequence 1 (BCL2-related)). This protein also ubiquitinates the p53 tumor suppressor, core histones, and DNA polymerase beta. Mutations in this gene are associated with Turner type X-linked syndromic mental retardation. [provided by RefSeq, Aug 2013]

LNX1 Gene

ligand of numb-protein X 1, E3 ubiquitin protein ligase

This gene encodes a membrane-bound protein that is involved in signal transduction and protein interactions. The encoded product is an E3 ubiquitin-protein ligase, which mediates ubiquitination and subsequent proteasomal degradation of proteins containing phosphotyrosine binding (PTB) domains. This protein may play an important role in tumorogenesis. Alternatively spliced transcript variants encoding distinct isoforms have been described. A pseudogene, which is located on chromosome 17, has been identified for this gene. [provided by RefSeq, Jul 2008]

LOC100419579 Gene

HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene

CCNB1IP1 Gene

cyclin B1 interacting protein 1, E3 ubiquitin protein ligase

HEI10 is a member of the E3 ubiquitin ligase family and functions in progression of the cell cycle through G(2)/M.[supplied by OMIM, Apr 2004]

GCLM Gene

glutamate-cysteine ligase, modifier subunit

Glutamate-cysteine ligase, also known as gamma-glutamylcysteine synthetase, is the first rate limiting enzyme of glutathione synthesis. The enzyme consists of two subunits, a heavy catalytic subunit and a light regulatory subunit. Gamma glutamylcysteine synthetase deficiency has been implicated in some forms of hemolytic anemia. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2015]

GCLC Gene

glutamate-cysteine ligase, catalytic subunit

Glutamate-cysteine ligase, also known as gamma-glutamylcysteine synthetase is the first rate-limiting enzyme of glutathione synthesis. The enzyme consists of two subunits, a heavy catalytic subunit and a light regulatory subunit. This locus encodes the catalytic subunit, while the regulatory subunit is derived from a different gene located on chromosome 1p22-p21. Mutations at this locus have been associated with hemolytic anemia due to deficiency of gamma-glutamylcysteine synthetase and susceptibility to myocardial infarction.[provided by RefSeq, Oct 2010]

DTL Gene

denticleless E3 ubiquitin protein ligase homolog (Drosophila)

LOC100128413 Gene

X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase pseudogene

SUCLA2 Gene

succinate-CoA ligase, ADP-forming, beta subunit

Succinyl-CoA synthetase (SCS) is a mitochondrial matrix enzyme that acts as a heterodimer, being composed of an invariant alpha subunit and a substrate-specific beta subunit. The protein encoded by this gene is an ATP-specific SCS beta subunit that dimerizes with the SCS alpha subunit to form SCS-A, an essential component of the tricarboxylic acid cycle. SCS-A hydrolyzes ATP to convert succinate to succinyl-CoA. Defects in this gene are a cause of myopathic mitochondrial DNA depletion syndrome. A pseudogene of this gene has been found on chromosome 6. [provided by RefSeq, Jul 2008]

LOC105369242 Gene

E3 ubiquitin-protein ligase HERC2-like

HLCS Gene

holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)

This gene encodes an enzyme that catalyzes the binding of biotin to carboxylases and histones. The protein plays an important role in gluconeogenesis, fatty acid synthesis and branched chain amino acid catabolism. Defects in this gene are the cause of holocarboxylase synthetase deficiency. Multiple alternatively spliced variants, encoding the same protein, have been identified.[provided by RefSeq, Jun 2011]

RTCB Gene

RNA 2',3'-cyclic phosphate and 5'-OH ligase

LOC100420641 Gene

TNF receptor-associated factor 7, E3 ubiquitin protein ligase pseudogene

TRIM63 Gene

tripartite motif containing 63, E3 ubiquitin protein ligase

This gene encodes a member of the RING zinc finger protein family found in striated muscle and iris. The product of this gene is an E3 ubiquitin ligase that localizes to the Z-line and M-line lattices of myofibrils. This protein plays an important role in the atrophy of skeletal and cardiac muscle and is required for the degradation of myosin heavy chain proteins, myosin light chain, myosin binding protein, and for muscle-type creatine kinase. [provided by RefSeq, Feb 2012]

PARK2 Gene

parkin RBR E3 ubiquitin protein ligase

The precise function of this gene is unknown; however, the encoded protein is a component of a multiprotein E3 ubiquitin ligase complex that mediates the targeting of substrate proteins for proteasomal degradation. Mutations in this gene are known to cause Parkinson disease and autosomal recessive juvenile Parkinson disease. Alternative splicing of this gene produces multiple transcript variants encoding distinct isoforms. Additional splice variants of this gene have been described but currently lack transcript support. [provided by RefSeq, Jul 2008]

LOC100130841 Gene

MDM2 oncogene, E3 ubiquitin protein ligase pseudogene

LOC100996379 Gene

E3 ubiquitin-protein ligase HERC2-like

MIB1 Gene

mindbomb E3 ubiquitin protein ligase 1

This gene encodes a protein containing multiple ankyrin repeats and RING finger domains that functions as an E3 ubiquitin ligase. The encoded protein positively regulates Notch signaling by ubiquitinating the Notch receptors, thereby facilitating their endocytosis. This protein may also promote the ubiquitination and degradation of death-associated protein kinase 1 (DAPK1). [provided by RefSeq, Jun 2013]

MIB2 Gene

mindbomb E3 ubiquitin protein ligase 2

RNF40 Gene

ring finger protein 40, E3 ubiquitin protein ligase

The protein encoded by this gene contains a RING finger, a motif known to be involved in protein-protein and protein-DNA interactions. This protein was reported to interact with the tumor suppressor protein RB1. Studies of the rat counterpart suggested that this protein may function as an E3 ubiquitin-protein ligase, and facilitate the ubiquitination and degradation of syntaxin 1, which is an essential component of the neurotransmitter release machinery. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]

BTRC Gene

beta-transducin repeat containing E3 ubiquitin protein ligase

This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbws class; in addition to an F-box, this protein contains multiple WD-40 repeats. The encoded protein mediates degradation of CD4 via its interaction with HIV-1 Vpu. It has also been shown to ubiquitinate phosphorylated NFKBIA (nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha), targeting it for degradation and thus activating nuclear factor kappa-B. Alternatively spliced transcript variants have been described. A related pseudogene exists in chromosome 6. [provided by RefSeq, Mar 2012]

MUL1 Gene

mitochondrial E3 ubiquitin protein ligase 1

DTX4 Gene

deltex 4, E3 ubiquitin ligase

DTX1 Gene

deltex 1, E3 ubiquitin ligase

Studies in Drosophila have identified this gene as encoding a positive regulator of the Notch-signaling pathway. The human gene encodes a protein of unknown function; however, it may play a role in basic helix-loop-helix transcription factor activity. [provided by RefSeq, Jul 2008]

DTX2 Gene

deltex 2, E3 ubiquitin ligase

DTX2 functions as an E3 ubiquitin ligase (Takeyama et al., 2003 [PubMed 12670957]).[supplied by OMIM, Nov 2009]

DTX3 Gene

deltex 3, E3 ubiquitin ligase

DTX3 functions as an E3 ubiquitin ligase (Takeyama et al., 2003 [PubMed 12670957]).[supplied by OMIM, Nov 2009]

NHLRC1 Gene

NHL repeat containing E3 ubiquitin protein ligase 1

The protein encoded by this gene is a single subunit E3 ubiquitin ligase. Laforin is polyubiquitinated by the encoded protein. Defects in this intronless gene lead to an accumulation of laforin and onset of Lafora disease, also known as progressive myoclonic epilepsy type 2 (EPM2).[provided by RefSeq, Mar 2010]

RFWD2 Gene

ring finger and WD repeat domain 2, E3 ubiquitin protein ligase

RNF20 Gene

ring finger protein 20, E3 ubiquitin protein ligase

The protein encoded by this gene shares similarity with BRE1 of S. cerevisiae. The protein encoded by this human gene is an E3 ubiquitin ligase that regulates chromosome structure by monoubiquitinating histone H2B. This protein acts as a putative tumor suppressor and positively regulates the p53 tumor suppressor as well as numerous histone H2A and H2B genes. In contrast, this protein also suppresses the expression of several protooncogenes and growth-related genes, including many genes that are induced by epidermal growth factor. This gene selectively suppresses the expression of some genes by interfering with chromatin recruitment of transcription elongation factor SII (TFIIS). [provided by RefSeq, Feb 2012]

LOC102723534 Gene

E3 ubiquitin-protein ligase HERC2-like

LOC100130550 Gene

g2/M phase-specific E3 ubiquitin-protein ligase-like

SUCLG2P4 Gene

succinate-CoA ligase, GDP-forming, beta subunit pseudogene 4

SUCLG2P2 Gene

succinate-CoA ligase, GDP-forming, beta subunit pseudogene 2

SUCLG2P3 Gene

succinate-CoA ligase, GDP-forming, beta subunit pseudogene 3

SUCLG2P1 Gene

succinate-CoA ligase, GDP-forming, beta subunit pseudogene 1

GLULP1 Gene

glutamate-ammonia ligase (glutamine synthetase) pseudogene 1

GLULP2 Gene

glutamate-ammonia ligase (glutamine synthetase) pseudogene 2

GLULP3 Gene

glutamate-ammonia ligase (glutamine synthetase) pseudogene 3

GLULP4 Gene

glutamate-ammonia ligase (glutamine synthetase) pseudogene 4

GLULP5 Gene

glutamate-ammonia ligase (glutamine synthetase) pseudogene 5

GLULP6 Gene

glutamate-ammonia ligase (glutamine synthetase) pseudogene 6

SHPRH Gene

SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase

SHPRH is a ubiquitously expressed protein that contains motifs characteristics of several DNA repair proteins, transcription factors, and helicases. SHPRH is a functional homolog of S. cerevisiae RAD5 (Unk et al., 2006 [PubMed 17108083]).[supplied by OMIM, Mar 2008]

LOC100418626 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

LOC100418627 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

LOC100418628 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

LOC100418629 Gene

succinate-CoA ligase, ADP-forming, beta subunit pseudogene

LOC100287985 Gene

ring-box 1, E3 ubiquitin protein ligase pseudogene

PELI1 Gene

pellino E3 ubiquitin protein ligase 1

PELI3 Gene

pellino E3 ubiquitin protein ligase family member 3

The protein encoded by this gene is a scaffold protein and an intermediate signaling protein in the innate immune response pathway. The encoded protein helps transmit the immune response signal from Toll-like receptors to IRAK1/TRAF6 complexes. Several transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Jul 2011]

PELI2 Gene

pellino E3 ubiquitin protein ligase family member 2

NEDD4 Gene

neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase

NEURL1 Gene

neuralized E3 ubiquitin protein ligase 1

NEURL2 Gene

neuralized E3 ubiquitin protein ligase 2

This gene encodes a protein that is involved in the regulation of myofibril organization. This protein is likely the adaptor component of the E3 ubiquitin ligase complex in striated muscle, and it regulates the ubiquitin-mediated degradation of beta-catenin during myogenesis. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jun 2013]

NEURL3 Gene

neuralized E3 ubiquitin protein ligase 3

NEURL4 Gene

neuralized E3 ubiquitin protein ligase 4

The protein encoded by this gene is predicted and it includes two isoforms resulting from two alternatively spliced transcript variants. [provided by RefSeq, Jul 2008]

ASB11 Gene

ankyrin repeat and SOCS box containing 11, E3 ubiquitin protein ligase

The protein encoded by this gene is a member of the ankyrin repeat and SOCS box-containing (ASB) family of proteins. They contain ankyrin repeat sequence and SOCS box domain. The SOCS box serves to couple suppressor of cytokine signalling (SOCS) proteins and their binding partners with the elongin B and C complex, possibly targeting them for degradation. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2011]

UFL1 Gene

UFM1-specific ligase 1

RAD18 Gene

RAD18 E3 ubiquitin protein ligase

The protein encoded by this gene is highly similar to S. cerevisiae DNA damage repair protein Rad18. Yeast Rad18 functions through its interaction with Rad6, which is an ubiquitin-conjugating enzyme required for post-replication repair of damaged DNA. Similar to its yeast counterpart, this protein is able to interact with the human homolog of yeast Rad6 protein through a conserved ring-finger motif. Mutation of this motif results in defective replication of UV-damaged DNA and hypersensitivity to multiple mutagens. [provided by RefSeq, Jul 2008]

SIAH1P1 Gene

siah E3 ubiquitin protein ligase 1 pseudogene 1

STUB1 Gene

STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase

This gene encodes a protein containing tetratricopeptide repeat and a U-box that functions as a ubiquitin ligase/cochaperone. The encoded protein binds to and ubiquitinates shock cognate 71 kDa protein (Hspa8) and DNA polymerase beta (Polb), among other targets. Mutations in this gene cause spinocerebellar ataxia, autosomal recessive 16. Alternative splicing results in multiple transcript variants. There is a pseudogene for this gene on chromosome 2. [provided by RefSeq, Jun 2014]

SUCLG2 Gene

succinate-CoA ligase, GDP-forming, beta subunit

This gene encodes a GTP-specific beta subunit of succinyl-CoA synthetase. Succinyl-CoA synthetase catalyzes the reversible reaction involving the formation of succinyl-CoA and succinate. Alternate splicing results in multiple transcript variants. Pseudogenes of this gene are found on chromosomes 5 and 12. [provided by RefSeq, Apr 2010]

SUCLG1 Gene

succinate-CoA ligase, alpha subunit

This gene encodes the alpha subunit of the heterodimeric enzyme succinate coenzyme A ligase. This enzyme is targeted to the mitochondria and catalyzes the conversion of succinyl CoA and ADP or GDP to succinate and ATP or GTP. Mutations in this gene are the cause of the metabolic disorder fatal infantile lactic acidosis and mitochondrial DNA depletion. [provided by RefSeq, Feb 2010]

LOC442042 Gene

polymerase (RNA) II (DNA directed) polypeptide D pseudogene

TDG Gene

thymine-DNA glycosylase

The protein encoded by this gene belongs to the TDG/mug DNA glycosylase family. Thymine-DNA glycosylase (TDG) removes thymine moieties from G/T mismatches by hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of DNA and the mispaired thymine. With lower activity, this enzyme also removes thymine from C/T and T/T mispairings. TDG can also remove uracil and 5-bromouracil from mispairings with guanine. This enzyme plays a central role in cellular defense against genetic mutation caused by the spontaneous deamination of 5-methylcytosine and cytosine. This gene may have a pseudogene in the p arm of chromosome 12. [provided by RefSeq, Jul 2008]

DDIT3 Gene

DNA-damage-inducible transcript 3

This gene encodes a member of the CCAAT/enhancer-binding protein (C/EBP) family of transcription factors. The protein functions as a dominant-negative inhibitor by forming heterodimers with other C/EBP members, such as C/EBP and LAP (liver activator protein), and preventing their DNA binding activity. The protein is implicated in adipogenesis and erythropoiesis, is activated by endoplasmic reticulum stress, and promotes apoptosis. Fusion of this gene and FUS on chromosome 16 or EWSR1 on chromosome 22 induced by translocation generates chimeric proteins in myxoid liposarcomas or Ewing sarcoma. Multiple alternatively spliced transcript variants encoding two isoforms with different length have been identified. [provided by RefSeq, Aug 2010]

DDIT4 Gene

DNA-damage-inducible transcript 4

TARDBPP1 Gene

TAR DNA binding protein pseudogene 1

TARDBPP2 Gene

TAR DNA binding protein pseudogene 2

DDI2 Gene

DNA-damage inducible 1 homolog 2 (S. cerevisiae)

DDI1 Gene

DNA-damage inducible 1 homolog 1 (S. cerevisiae)

N6AMT1 Gene

N-6 adenine-specific DNA methyltransferase 1 (putative)

This gene encodes an N(6)-adenine-specific DNA methyltransferase. The encoded enzyme may be involved in the methylation of release factor I during translation termination. This enzyme is also involved in converting the arsenic metabolite monomethylarsonous acid to the less toxic dimethylarsonic acid. Alternative splicing pf this gene results in multiple transcript variants. A related pseudogene has been identified on chromosome 11. [provided by RefSeq, Jul 2014]

N6AMT2 Gene

N-6 adenine-specific DNA methyltransferase 2 (putative)

LOC102724184 Gene

DNA (cytosine-5)-methyltransferase 3-like

LOC646044 Gene

single stranded DNA binding protein 4 pseudogene

SSBP4 Gene

single stranded DNA binding protein 4

LOC100421620 Gene

polymerase (RNA) mitochondrial (DNA directed) pseudogene

LOC105377532 Gene

DNA dC->dU-editing enzyme APOBEC-3G-like

LOC100132698 Gene

single stranded DNA binding protein 4 pseudogene

TDP2 Gene

tyrosyl-DNA phosphodiesterase 2

This gene encodes a member of a superfamily of divalent cation-dependent phosphodiesterases. The encoded protein associates with CD40, tumor necrosis factor (TNF) receptor-75 and TNF receptor associated factors (TRAFs), and inhibits nuclear factor-kappa-B activation. This protein has sequence and structural similarities with APE1 endonuclease, which is involved in both DNA repair and the activation of transcription factors. [provided by RefSeq, Jul 2008]

GADD45A Gene

growth arrest and DNA-damage-inducible, alpha

This gene is a member of a group of genes whose transcript levels are increased following stressful growth arrest conditions and treatment with DNA-damaging agents. The protein encoded by this gene responds to environmental stresses by mediating activation of the p38/JNK pathway via MTK1/MEKK4 kinase. The DNA damage-induced transcription of this gene is mediated by both p53-dependent and -independent mechanisms. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene.[provided by RefSeq, Dec 2010]

GADD45B Gene

growth arrest and DNA-damage-inducible, beta

This gene is a member of a group of genes whose transcript levels are increased following stressful growth arrest conditions and treatment with DNA-damaging agents. The genes in this group respond to environmental stresses by mediating activation of the p38/JNK pathway. This activation is mediated via their proteins binding and activating MTK1/MEKK4 kinase, which is an upstream activator of both p38 and JNK MAPKs. The function of these genes or their protein products is involved in the regulation of growth and apoptosis. These genes are regulated by different mechanisms, but they are often coordinately expressed and can function cooperatively in inhibiting cell growth. [provided by RefSeq, Jul 2008]

GADD45G Gene

growth arrest and DNA-damage-inducible, gamma

This gene is a member of a group of genes whose transcript levels are increased following stressful growth arrest conditions and treatment with DNA-damaging agents. The protein encoded by this gene responds to environmental stresses by mediating activation of the p38/JNK pathway via MTK1/MEKK4 kinase. The GADD45G is highly expressed in placenta. [provided by RefSeq, Jul 2008]

POLR3GP2 Gene

polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 2

POLR3GP1 Gene

polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 1

POLN Gene

polymerase (DNA directed) nu

This gene encodes a DNA polymerase type-A family member. The encoded protein plays a role in DNA repair and homologous recombination. This gene shares its 5' exons with some transcripts from overlapping GeneID: 79441, which encodes an augmentin-like protein complex subunit. [provided by RefSeq, Dec 2014]

POLR2CP Gene

polymerase (RNA) II (DNA directed) polypeptide C, pseudogene

CENPBD1 Gene

CENPB DNA-binding domains containing 1

DNTT Gene

DNA nucleotidylexotransferase

This gene is a member of the DNA polymerase type-X family and encodes a template-independent DNA polymerase that catalyzes the addition of deoxynucleotides to the 3'-hydroxyl terminus of oligonucleotide primers. In vivo, the encoded protein is expressed in a restricted population of normal and malignant pre-B and pre-T lymphocytes during early differentiation, where it generates antigen receptor diversity by synthesizing non-germ line elements (N-regions) at the junctions of rearranged Ig heavy chain and T cell receptor gene segments. Alternatively spliced transcript variants encoding different isoforms of this gene have been described. [provided by RefSeq, Jul 2008]

PRIM1 Gene

primase, DNA, polypeptide 1 (49kDa)

The replication of DNA in eukaryotic cells is carried out by a complex chromosomal replication apparatus, in which DNA polymerase alpha and primase are two key enzymatic components. Primase, which is a heterodimer of a small subunit and a large subunit, synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication. The protein encoded by this gene is the small, 49 kDa primase subunit. [provided by RefSeq, Jul 2008]

PRIM2 Gene

primase, DNA, polypeptide 2 (58kDa)

This gene encodes the 58 kilodalton subunit of DNA primase, an enzyme that plays a key role in the replication of DNA. The encoded protein forms a heterodimer with a 49 kilodalton subunit. This heterodimer functions as a DNA-directed RNA polymerase to synthesize small RNA primers that are used to create Okazaki fragments on the lagging strand of the DNA. Alternative splicing of this gene results in multiple transcript variants. This gene has a related pseudogene, which is also present on chromosome 6. [provided by RefSeq, Apr 2014]

LOC390250 Gene

polymerase (RNA) II (DNA directed) polypeptide E, 25kDa pseudogene

MSANTD2P1 Gene

Myb/SANT-like DNA-binding domain containing 2 pseudogene 1

PRIMPOL Gene

primase and polymerase (DNA-directed)

TDP1 Gene

tyrosyl-DNA phosphodiesterase 1

The protein encoded by this gene is involved in repairing stalled topoisomerase I-DNA complexes by catalyzing the hydrolysis of the phosphodiester bond between the tyrosine residue of topoisomerase I and the 3-prime phosphate of DNA. This protein may also remove glycolate from single-stranded DNA containing 3-prime phosphoglycolate, suggesting a role in repair of free-radical mediated DNA double-strand breaks. This gene is a member of the phospholipase D family and contains two PLD phosphodiesterase domains. Mutations in this gene are associated with the disease spinocerebellar ataxia with axonal neuropathy (SCAN1). While several transcript variants may exist for this gene, the full-length natures of only two have been described to date. These two represent the major variants of this gene and encode the same isoform. [provided by RefSeq, Jul 2008]

LOC101060521 Gene

DNA-directed RNA polymerase III subunit RPC5

POLR3F Gene

polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa

The protein encoded by this gene is one of more than a dozen subunits forming eukaryotic RNA polymerase III (RNA Pol III), which transcribes 5S ribosomal RNA and tRNA genes. This protein has been shown to bind both TFIIIB90 and TBP, two subunits of RNA polymerase III transcription initiation factor IIIB (TFIIIB). Unlike most of the other RNA Pol III subunits, the encoded protein is unique to this polymerase. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

POLR3G Gene

polymerase (RNA) III (DNA directed) polypeptide G (32kD)

POLR3D Gene

polymerase (RNA) III (DNA directed) polypeptide D, 44kDa

This gene complements a temperature-sensitive mutant isolated from the BHK-21 Syrian hamster cell line. It leads to a block in progression through the G1 phase of the cell cycle at nonpermissive temperatures. [provided by RefSeq, Jul 2008]

POLR3E Gene

polymerase (RNA) III (DNA directed) polypeptide E (80kD)

POLR3B Gene

polymerase (RNA) III (DNA directed) polypeptide B

This gene encodes the second largest subunit of RNA polymerase III, the polymerase responsible for synthesizing transfer and small ribosomal RNAs in eukaryotes. The largest subunit and the encoded protein form the catalytic center of RNA polymerase III. Mutations in this gene are a cause of hypomyelinating leukodystrophy. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Dec 2011]

POLR3C Gene

polymerase (RNA) III (DNA directed) polypeptide C (62kD)

POLR3A Gene

polymerase (RNA) III (DNA directed) polypeptide A, 155kDa

The protein encoded by this gene is the catalytic component of RNA polymerase III, which synthesizes small RNAs. The encoded protein also acts as a sensor to detect foreign DNA and trigger an innate immune response. [provided by RefSeq, Aug 2011]

POLR3K Gene

polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa

This gene encodes a small essential subunit of RNA polymerase III, the polymerase responsible for synthesizing transfer and small ribosomal RNAs in eukaryotes. The carboxy-terminal domain of this subunit shares a high degree of sequence similarity to the carboxy-terminal domain of an RNA polymerase II elongation factor. This similarity in sequence is supported by functional studies showing that this subunit is required for proper pausing and termination during transcription. Pseudogenes of this gene are found on chromosomes 13 and 17.[provided by RefSeq, Jul 2010]

POLR3H Gene

polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)

DNMT1 Gene

DNA (cytosine-5-)-methyltransferase 1

DNA (cytosine-5-)-methyltransferase 1 has a role in the establishment and regulation of tissue-specific patterns of methylated cytosine residues. Aberrant methylation patterns are associated with certain human tumors and developmental abnormalities. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2008]

PRKDC Gene

protein kinase, DNA-activated, catalytic polypeptide

This gene encodes the catalytic subunit of the DNA-dependent protein kinase (DNA-PK). It functions with the Ku70/Ku80 heterodimer protein in DNA double strand break repair and recombination. The protein encoded is a member of the PI3/PI4-kinase family.[provided by RefSeq, Jul 2010]

DSCC1 Gene

DNA replication and sister chromatid cohesion 1

CHTF18 (MIM 613201), CHTF8 (MIM 613202), and DSCC1 are components of an alternative replication factor C (RFC) (see MIM 600404) complex that loads PCNA (MIM 176740) onto DNA during S phase of the cell cycle (Merkle et al., 2003 [PubMed 12766176]; Bermudez et al., 2003 [PubMed 12930902]).[supplied by OMIM, Dec 2009]

LOC100130177 Gene

uracil-DNA glycosylase pseudogene

D6S2723E Gene

DNA segment on chromosome 6 (unique, pseudogene) 2723 expressed sequence

DCLRE1CP1 Gene

DNA cross-link repair 1C pseudogene 1

DNA2 Gene

DNA replication helicase/nuclease 2

This gene encodes a member of the DNA2/NAM7 helicase family. The encoded protein is a conserved helicase/nuclease involved in the maintenance of mitochondrial and nuclear DNA stability. Mutations in this gene are associated with autosomal dominant progressive external ophthalmoplegia-6 (PEOA6) and Seckel syndrome 8. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2014]

DNMT3AP1 Gene

DNA methyltransferase 3A pseudogene 1

DDB2 Gene

damage-specific DNA binding protein 2, 48kDa

This gene encodes a protein that is necessary for the repair of ultraviolet light-damaged DNA. This protein is the smaller subunit of a heterodimeric protein complex that participates in nucleotide excision repair, and this complex mediates the ubiquitylation of histones H3 and H4, which facilitates the cellular response to DNA damage. This subunit appears to be required for DNA binding. Mutations in this gene cause xeroderma pigmentosum complementation group E, a recessive disease that is characterized by an increased sensitivity to UV light and a high predisposition for skin cancer development, in some cases accompanied by neurological abnormalities. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2014]

LOC401002 Gene

single stranded DNA binding protein 3 pseudogene

LOC646674 Gene

single stranded DNA binding protein 4 pseudogene

LOC100996860 Gene

TAR DNA-binding protein 43 pseudogene

CDT1 Gene

chromatin licensing and DNA replication factor 1

The protein encoded by this gene is involved in the formation of the pre-replication complex that is necessary for DNA replication. The encoded protein can bind geminin, which prevents replication and may function to prevent this protein from initiating replication at inappropriate origins. Phosphorylation of this protein by cyclin A-dependent kinases results in degradation of the protein. [provided by RefSeq, Mar 2011]

POLD4 Gene

polymerase (DNA-directed), delta 4, accessory subunit

This gene encodes the smallest subunit of DNA polymerase delta. DNA polymerase delta possesses both polymerase and 3' to 5' exonuclease activity and plays a critical role in DNA replication and repair. The encoded protein enhances the activity of DNA polymerase delta and plays a role in fork repair and stabilization through interactions with the DNA helicase Bloom syndrome protein. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Mar 2012]

HELB Gene

helicase (DNA) B

This gene encodes a DNA-dependent ATPase which catalyzes the unwinding of DNA necessary for DNA replication, repair, recombination, and transcription. This gene is thought to function specifically during the S phase entry of the cell cycle. [provided by RefSeq, Mar 2012]

ZBP1 Gene

Z-DNA binding protein 1

This gene encodes a Z-DNA binding protein. The encoded protein plays a role in the innate immune response by binding to foreign DNA and inducing type-I interferon production. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Dec 2011]

POLE3 Gene

polymerase (DNA directed), epsilon 3, accessory subunit

POLE3 is a histone-fold protein that interacts with other histone-fold proteins to bind DNA in a sequence-independent manner. These histone-fold protein dimers combine within larger enzymatic complexes for DNA transcription, replication, and packaging.[supplied by OMIM, Apr 2004]

AHDC1 Gene

AT hook, DNA binding motif, containing 1

This gene encodes a protein containing two AT-hooks, which likely function in DNA binding. Mutations in this gene were found in individuals with Xia-Gibbs syndrome. [provided by RefSeq, Jun 2014]

LPSA Gene

Oncogene liposarcoma (DNA segment, single copy, expressed, probes

RFX8 Gene

RFX family member 8, lacking RFX DNA binding domain

LOC643387 Gene

TAR DNA binding protein pseudogene

LOC246724 Gene

DNA directed RNA polymerase II polypeptide J-related gene

LOC246725 Gene

DNA directed RNA polymerase II polypeptide J-related gene

LOC101060644 Gene

TAR DNA-binding protein 43 pseudogene

LOC646804 Gene

alkylated DNA repair protein alkB homolog 8-like

POLR3KP2 Gene

polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 2

POLR3KP1 Gene

polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 1

POLDIP3 Gene

polymerase (DNA-directed), delta interacting protein 3

This gene encodes an RRM (RNA recognition motif)-containing protein that participates in the regulation of translation by recruiting ribosomal protein S6 kinase beta-1 to mRNAs. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

POLDIP2 Gene

polymerase (DNA-directed), delta interacting protein 2

This gene encodes a protein that interacts with the DNA polymerase delta p50 subunit, as well as with proliferating cell nuclear antigen. The encoded protein maybe play a role in the ability of the replication fork to bypass DNA lesions. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]

DFFA Gene

DNA fragmentation factor, 45kDa, alpha polypeptide

Apoptosis is a cell death process that removes toxic and/or useless cells during mammalian development. The apoptotic process is accompanied by shrinkage and fragmentation of the cells and nuclei and degradation of the chromosomal DNA into nucleosomal units. DNA fragmentation factor (DFF) is a heterodimeric protein of 40-kD (DFFB) and 45-kD (DFFA) subunits. DFFA is the substrate for caspase-3 and triggers DNA fragmentation during apoptosis. DFF becomes activated when DFFA is cleaved by caspase-3. The cleaved fragments of DFFA dissociate from DFFB, the active component of DFF. DFFB has been found to trigger both DNA fragmentation and chromatin condensation during apoptosis. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

DFFB Gene

DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)

Apoptosis is a cell death process that removes toxic and/or useless cells during mammalian development. The apoptotic process is accompanied by shrinkage and fragmentation of the cells and nuclei and degradation of the chromosomal DNA into nucleosomal units. DNA fragmentation factor (DFF) is a heterodimeric protein of 40-kD (DFFB) and 45-kD (DFFA) subunits. DFFA is the substrate for caspase-3 and triggers DNA fragmentation during apoptosis. DFF becomes activated when DFFA is cleaved by caspase-3. The cleaved fragments of DFFA dissociate from DFFB, the active component of DFF. DFFB has been found to trigger both DNA fragmentation and chromatin condensation during apoptosis. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene but the biological validity of some of these variants has not been determined. [provided by RefSeq, Sep 2013]

REV3L Gene

REV3-like, polymerase (DNA directed), zeta, catalytic subunit

LOC101059974 Gene

p53 and DNA damage-regulated protein 1 pseudogene

MCIDAS Gene

multiciliate differentiation and DNA synthesis associated cell cycle protein

WDHD1 Gene

WD repeat and HMG-box DNA binding protein 1

The protein encoded by this gene contains multiple N-terminal WD40 domains and a C-terminal high mobility group (HMG) box. WD40 domains are found in a variety of eukaryotic proteins and may function as adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly. HMG boxes are found in many eukaryotic proteins involved in chromatin assembly, transcription and replication. Alternative splicing results in two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

LOC101930420 Gene

DNA primase large subunit-like

LOC100132723 Gene

single stranded DNA binding protein 4 pseudogene

LOC100129321 Gene

single stranded DNA binding protein 3 pseudogene

TDGP1 Gene

thymine-DNA glycosylase pseudogene 1

REV1 Gene

REV1, polymerase (DNA directed)

This gene encodes a protein with similarity to the S. cerevisiae mutagenesis protein Rev1. The Rev1 proteins contain a BRCT domain, which is important in protein-protein interactions. A suggested role for the human Rev1-like protein is as a scaffold that recruits DNA polymerases involved in translesion synthesis (TLS) of damaged DNA. Two alternatively spliced transcript variants that encode different proteins have been found. [provided by RefSeq, Jul 2008]

LOC100128540 Gene

TAR DNA-binding protein 43-like

ID2B Gene

inhibitor of DNA binding 2B, dominant negative helix-loop-helix protein (pseudogene)

RAD1 Gene

RAD1 checkpoint DNA exonuclease

This gene encodes a component of a heterotrimeric cell cycle checkpoint complex, known as the 9-1-1 complex, that is activated to stop cell cycle progression in response to DNA damage or incomplete DNA replication. The 9-1-1 complex is recruited by RAD17 to affected sites where it may attract specialized DNA polymerases and other DNA repair effectors. Alternatively spliced transcript variants of this gene have been described. [provided by RefSeq, Jan 2009]

LOC101928945 Gene

uracil-DNA glycosylase pseudogene

PIF1 Gene

PIF1 5'-to-3' DNA helicase

This gene encodes a DNA-dependent adenosine triphosphate (ATP)-metabolizing enzyme that functions as a 5' to 3' DNA helicase. The encoded protein can resolve G-quadruplex structures and RNA-DNA hybrids at the ends of chromosomes. It also prevents telomere elongation by inhibiting the actions of telomerase. Alternative splicing and the use of alternative start codons results in multiple isoforms that are differentially localized to either the mitochondria or the nucleus. [provided by RefSeq, Nov 2013]

POLR2KP1 Gene

polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 1

TOP3BP1 Gene

topoisomerase (DNA) III beta pseudogene 1

This gene was predicted by automated computational analysis. It encodes a protein with similarity to human topoisomerase (DNA) III beta, which is thought to relax supercoiled DNA upon replication, transcription, and cell division. This gene lies in the immunoglobulin lambda gene cluster on chromosome 22q11.21. [provided by RefSeq, Jul 2008]

MSANTD4 Gene

Myb/SANT-like DNA-binding domain containing 4 with coiled-coils

MSANTD1 Gene

Myb/SANT-like DNA-binding domain containing 1

MSANTD2 Gene

Myb/SANT-like DNA-binding domain containing 2

MSANTD3 Gene

Myb/SANT-like DNA-binding domain containing 3

TARDBP Gene

TAR DNA binding protein

HIV-1, the causative agent of acquired immunodeficiency syndrome (AIDS), contains an RNA genome that produces a chromosomally integrated DNA during the replicative cycle. Activation of HIV-1 gene expression by the transactivator Tat is dependent on an RNA regulatory element (TAR) located downstream of the transcription initiation site. The protein encoded by this gene is a transcriptional repressor that binds to chromosomally integrated TAR DNA and represses HIV-1 transcription. In addition, this protein regulates alternate splicing of the CFTR gene. A similar pseudogene is present on chromosome 20. [provided by RefSeq, Jul 2008]

BKMA1 Gene

Banded krait minor satellite DNA-1

POLG Gene

polymerase (DNA directed), gamma

Mitochondrial DNA polymerase is heterotrimeric, consisting of a homodimer of accessory subunits plus a catalytic subunit. The protein encoded by this gene is the catalytic subunit of mitochondrial DNA polymerase. The encoded protein contains a polyglutamine tract near its N-terminus that may be polymorphic. Defects in this gene are a cause of progressive external ophthalmoplegia with mitochondrial DNA deletions 1 (PEOA1), sensory ataxic neuropathy dysarthria and ophthalmoparesis (SANDO), Alpers-Huttenlocher syndrome (AHS), and mitochondrial neurogastrointestinal encephalopathy syndrome (MNGIE). Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

POLE Gene

polymerase (DNA directed), epsilon, catalytic subunit

This gene encodes the catalytic subunit of DNA polymerase epsilon. The enzyme is involved in DNA repair and chromosomal DNA replication. Mutations in this gene have been associated with colorectal cancer 12 and facial dysmorphism, immunodeficiency, livedo, and short stature. [provided by RefSeq, Sep 2013]

POLB Gene

polymerase (DNA directed), beta

The protein encoded by this gene is a DNA polymerase involved in base excision and repair, also called gap-filling DNA synthesis. The encoded protein, acting as a monomer, is normally found in the cytoplasm, but it translocates to the nucleus upon DNA damage. Several transcript variants of this gene exist, but the full-length nature of only one has been described to date. [provided by RefSeq, Sep 2011]

POLM Gene

polymerase (DNA directed), mu

POLL Gene

polymerase (DNA directed), lambda

This gene encodes a DNA polymerase. DNA polymerases catalyze DNA-template-directed extension of the 3'-end of a DNA strand. This particular polymerase, which is a member of the X family of DNA polymerases, likely plays a role in non-homologous end joining and other DNA repair processes. Alternatively spliced transcript variants have been described. [provided by RefSeq, Mar 2010]

POLK Gene

polymerase (DNA directed) kappa

External and internal DNA-damaging agents continually threaten the integrity of genetic material in cells. Although a variety of repair mechanisms exist to remove the resulting lesions, some lesions escape repair and block the replication machinery. Members of the Y family of DNA polymerases, such as POLK, permit the continuity of the replication fork by allowing replication through such DNA lesions. Each Y family polymerase has a unique DNA-damage bypass and fidelity profile. POLK is specialized for the extension step of lesion bypass (summary by Lone et al., 2007 [PubMed 17317631]).[supplied by OMIM, Jan 2010]

POLI Gene

polymerase (DNA directed) iota

POLH Gene

polymerase (DNA directed), eta

This gene encodes a member of the Y family of specialized DNA polymerases. It copies undamaged DNA with a lower fidelity than other DNA-directed polymerases. However, it accurately replicates UV-damaged DNA; when thymine dimers are present, this polymerase inserts the complementary nucleotides in the newly synthesized DNA, thereby bypassing the lesion and suppressing the mutagenic effect of UV-induced DNA damage. This polymerase is thought to be involved in hypermutation during immunoglobulin class switch recombination. Mutations in this gene result in XPV, a variant type of xeroderma pigmentosum. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2014]

LOC100420848 Gene

Myb/SANT-like DNA-binding domain containing 3 pseudogene

POLE2 Gene

polymerase (DNA directed), epsilon 2, accessory subunit

POLE4 Gene

polymerase (DNA-directed), epsilon 4, accessory subunit

POLE4 is a histone-fold protein that interacts with other histone-fold proteins to bind DNA in a sequence-independent manner. These histone-fold protein dimers combine within larger enzymatic complexes for DNA transcription, replication, and packaging.[supplied by OMIM, Apr 2004]

TOP2B Gene

topoisomerase (DNA) II beta 180kDa

This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This nuclear enzyme is involved in processes such as chromosome condensation, chromatid separation, and the relief of torsional stress that occurs during DNA transcription and replication. It catalyzes the transient breaking and rejoining of two strands of duplex DNA which allows the strands to pass through one another, thus altering the topology of DNA. Two forms of this enzyme exist as likely products of a gene duplication event. The gene encoding this form, beta, is localized to chromosome 3 and the alpha form is localized to chromosome 17. The gene encoding this enzyme functions as the target for several anticancer agents and a variety of mutations in this gene have been associated with the development of drug resistance. Reduced activity of this enzyme may also play a role in ataxia-telangiectasia. Alternative splicing of this gene results in two transcript variants; however, the second variant has not yet been fully described. [provided by RefSeq, Jul 2008]

TOP2A Gene

topoisomerase (DNA) II alpha 170kDa

This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This nuclear enzyme is involved in processes such as chromosome condensation, chromatid separation, and the relief of torsional stress that occurs during DNA transcription and replication. It catalyzes the transient breaking and rejoining of two strands of duplex DNA which allows the strands to pass through one another, thus altering the topology of DNA. Two forms of this enzyme exist as likely products of a gene duplication event. The gene encoding this form, alpha, is localized to chromosome 17 and the beta gene is localized to chromosome 3. The gene encoding this enzyme functions as the target for several anticancer agents and a variety of mutations in this gene have been associated with the development of drug resistance. Reduced activity of this enzyme may also play a role in ataxia-telangiectasia. [provided by RefSeq, Jul 2010]

GADD45GIP1 Gene

growth arrest and DNA-damage-inducible, gamma interacting protein 1

This gene encodes a nuclear-localized protein that may be induced by p53 and regulates the cell cycle by inhibiting G1 to S phase progression. The encoded protein may interact with other cell cycle regulators. [provided by RefSeq, Aug 2012]

DCLRE1B Gene

DNA cross-link repair 1B

DNA interstrand cross-links prevent strand separation, thereby physically blocking transcription, replication, and segregation of DNA. DCLRE1B is one of several evolutionarily conserved genes involved in repair of interstrand cross-links (Dronkert et al., 2000 [PubMed 10848582]).[supplied by OMIM, Mar 2008]

DCLRE1C Gene

DNA cross-link repair 1C

This gene encodes a nuclear protein that is involved in V(D)J recombination and DNA repair. The encoded protein has single-strand-specific 5'-3' exonuclease activity; it also exhibits endonuclease activity on 5' and 3' overhangs and hairpins. The protein also functions in the regulation of the cell cycle in response to DNA damage. Mutations in this gene can cause Athabascan-type severe combined immunodeficiency (SCIDA) and Omenn syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

DCLRE1A Gene

DNA cross-link repair 1A

This gene encodes a conserved protein that is involved in the repair of DNA interstrand cross-links. DNA cross-links suppress transcription, replication, and DNA segregation. The encoded protein is a regulator of the mitotic cell cycle checkpoint. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2012]

DFFBP1 Gene

DNA fragmentation factor, 40kDa, beta polypeptide pseudogene 1

HFM1 Gene

HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)

The protein encoded by this gene is thought to be an ATP-dependent DNA helicase and is expressed mainly in germ-line cells. Defects in this gene are a cause of premature ovarian failure 9 (POF9). [provided by RefSeq, Apr 2014]

KLLN Gene

killin, p53-regulated DNA replication inhibitor

The protein encoded by this intronless gene is found in the nucleus, where it can inhibit DNA synthesis and promote S phase arrest coupled to apoptosis. The expression of this DNA binding protein is upregulated by transcription factor p53. [provided by RefSeq, Dec 2012]

CHD1L Gene

chromodomain helicase DNA binding protein 1-like

This gene encodes a DNA helicase protein involved in DNA repair. The protein converts ATP to add poly(ADP-ribose) as it regulates chromatin relaxation following DNA damage. Several alternatively spliced transcripts variants have been described for this gene. [provided by RefSeq, Jan 2012]

CHD1 Gene

chromodomain helicase DNA binding protein 1

The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template. [provided by RefSeq, Jul 2008]

CHD3 Gene

chromodomain helicase DNA binding protein 3

This gene encodes a member of the CHD family of proteins which are characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. This protein is one of the components of a histone deacetylase complex referred to as the Mi-2/NuRD complex which participates in the remodeling of chromatin by deacetylating histones. Chromatin remodeling is essential for many processes including transcription. Autoantibodies against this protein are found in a subset of patients with dermatomyositis. Three alternatively spliced transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

CHD2 Gene

chromodomain helicase DNA binding protein 2

The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

CHD5 Gene

chromodomain helicase DNA binding protein 5

This gene encodes a member of the chromodomain helicase DNA-binding protein family. Members of this family are characterized by a chromodomain, a helicase ATP-binding domain and an additional functional domain. This gene encodes a neuron-specific protein that may function in chromatin remodeling and gene transcription. This gene is a potential tumor suppressor gene that may play a role in the development of neuroblastoma. [provided by RefSeq, Feb 2012]

CHD4 Gene

chromodomain helicase DNA binding protein 4

The product of this gene belongs to the SNF2/RAD54 helicase family. It represents the main component of the nucleosome remodeling and deacetylase complex and plays an important role in epigenetic transcriptional repression. Patients with dermatomyositis develop antibodies against this protein. Somatic mutations in this gene are associated with serous endometrial tumors. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2014]

CHD7 Gene

chromodomain helicase DNA binding protein 7

This gene encodes a protein that contains several helicase family domains. Mutations in this gene have been found in some patients with the CHARGE syndrome. [provided by RefSeq, Jul 2008]

CHD6 Gene

chromodomain helicase DNA binding protein 6

This gene encodes a member of the SNF2/RAD54 helicase protein family. The encoded protein contains two chromodomains, a helicase domain, and an ATPase domain. Several multi-subunit protein complexes remodel chromatin to allow patterns of cell type-specific gene expression, and the encoded protein is thought to be a core member of one or more of these chromatin remodeling complexes. The encoded protein may function as a transcriptional repressor and is involved in the cellular repression of influenza virus replication. [provided by RefSeq, Jul 2013]

CHD9 Gene

chromodomain helicase DNA binding protein 9

CHD8 Gene

chromodomain helicase DNA binding protein 8

This gene encodes a DNA helicase that functions as a transcription repressor by remodeling chromatin structure. It binds beta-catenin and negatively regulates Wnt signaling pathway, which plays a pivotal role in vertebrate early development and morphogenesis. Mice lacking this gene exhibit early embryonic death. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2010]

CENPBD1P1 Gene

CENPB DNA-binding domains containing 1 pseudogene 1

MPG Gene

N-methylpurine-DNA glycosylase

POLRMT Gene

polymerase (RNA) mitochondrial (DNA directed)

This gene encodes a mitochondrial DNA-directed RNA polymerase. The gene product is responsible for mitochondrial gene expression as well as for providing RNA primers for initiation of replication of the mitochondrial genome. Although this polypeptide has the same function as the three nuclear DNA-directed RNA polymerases, it is more closely related to RNA polymerases of phage and mitochondrial polymerases of lower eukaryotes. [provided by RefSeq, Jul 2008]

LOC727709 Gene

DNA-damage regulated autophagy modulator 1 pseudogene

MGMT Gene

O-6-methylguanine-DNA methyltransferase

GMNN Gene

geminin, DNA replication inhibitor

This gene encodes a protein that plays a critical role in cell cycle regulation. The encoded protein inhibits DNA replication by binding to DNA replication factor Cdt1, preventing the incorporation of minichromosome maintenance proteins into the pre-replication complex. The encoded protein is expressed during the S and G2 phases of the cell cycle and is degraded by the anaphase-promoting complex during the metaphase-anaphase transition. Increased expression of this gene may play a role in several malignancies including colon, rectal and breast cancer. Alternatively spliced transcript variants have been observed for this gene, and two pseudogenes of this gene are located on the short arm of chromosome 16. [provided by RefSeq, Oct 2011]

POLQ Gene

polymerase (DNA directed), theta

GADD45AP1 Gene

growth arrest and DNA-damage-inducible, alpha pseudogene 1

POLR3GL Gene

polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like

LOC100132659 Gene

single-stranded DNA binding protein 2 pseudogene

POLR2LP Gene

polymerase (RNA) II (DNA directed) polypeptide L pseudogene

DRAM1 Gene

DNA-damage regulated autophagy modulator 1

This gene is regulated as part of the p53 tumor suppressor pathway. The gene encodes a lysosomal membrane protein that is required for the induction of autophagy by the pathway. Decreased transcriptional expression of this gene is associated with various tumors. This gene has a pseudogene on chromosome 4. [provided by RefSeq, Jul 2008]

DRAM2 Gene

DNA-damage regulated autophagy modulator 2

APEX1 Gene

APEX nuclease (multifunctional DNA repair enzyme) 1

Apurinic/apyrimidinic (AP) sites occur frequently in DNA molecules by spontaneous hydrolysis, by DNA damaging agents or by DNA glycosylases that remove specific abnormal bases. AP sites are pre-mutagenic lesions that can prevent normal DNA replication so the cell contains systems to identify and repair such sites. Class II AP endonucleases cleave the phosphodiester backbone 5' to the AP site. This gene encodes the major AP endonuclease in human cells. Splice variants have been found for this gene; all encode the same protein. [provided by RefSeq, Jul 2008]

OGG1 Gene

8-oxoguanine DNA glycosylase

This gene encodes the enzyme responsible for the excision of 8-oxoguanine, a mutagenic base byproduct which occurs as a result of exposure to reactive oxygen. The action of this enzyme includes lyase activity for chain cleavage. Alternative splicing of the C-terminal region of this gene classifies splice variants into two major groups, type 1 and type 2, depending on the last exon of the sequence. Type 1 alternative splice variants end with exon 7 and type 2 end with exon 8. All variants share the N-terminal region in common, which contains a mitochondrial targeting signal that is essential for mitochondrial localization. Many alternative splice variants for this gene have been described, but the full-length nature for every variant has not been determined. [provided by RefSeq, Aug 2008]

TOP1P1 Gene

topoisomerase (DNA) I pseudogene 1

TOP1P2 Gene

topoisomerase (DNA) I pseudogene 2

SPIDR Gene

scaffolding protein involved in DNA repair

PDRG1 Gene

p53 and DNA-damage regulated 1

DMAP1 Gene

DNA methyltransferase 1 associated protein 1

This gene encodes a subunit of several, distinct complexes involved in the repression or activation of transcription. The encoded protein can independently repress transcription and is targeted to replication foci throughout S phase by interacting directly with the N-terminus of DNA methyltransferase 1. During late S phase, histone deacetylase 2 is added to this complex, providing a means to deacetylate histones in transcriptionally inactive heterochromatin following replication. The encoded protein is also a component of the nucleosome acetyltransferase of H4 complex and interacts with the transcriptional corepressor tumor susceptibility gene 101 and the pro-apoptotic death-associated protein 6, among others. Alternatively spliced transcript variants encoding the same protein have been described. [provided by RefSeq, Jul 2008]

SMUG1 Gene

single-strand-selective monofunctional uracil-DNA glycosylase 1

This gene encodes a protein that participates in base excision repair by removing uracil from single- and double-stranded DNA. Many alternatively spliced transcript variants exist for this gene; the full-length nature is known for some but not all of the variants. [provided by RefSeq, Aug 2011]

SON Gene

SON DNA binding protein

This gene encodes a protein that contains multiple simple repeats. The encoded protein binds RNA and promotes pre-mRNA splicing, particularly of transcripts with poor splice sites. The protein also recognizes a specific DNA sequence found in the human hepatitis B virus (HBV) and represses HBV core promoter activity. There is a pseudogene for this gene on chromosome 1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

DDIT4L Gene

DNA-damage-inducible transcript 4-like

LOC100419572 Gene

uracil-DNA glycosylase pseudogene

LOC100133127 Gene

geminin, DNA replication inhibitor pseudogene 1

DDB1 Gene

damage-specific DNA binding protein 1, 127kDa

The protein encoded by this gene is the large subunit (p127) of the heterodimeric DNA damage-binding (DDB) complex while another protein (p48) forms the small subunit. This protein complex functions in nucleotide-excision repair and binds to DNA following UV damage. Defective activity of this complex causes the repair defect in patients with xeroderma pigmentosum complementation group E (XPE) - an autosomal recessive disorder characterized by photosensitivity and early onset of carcinomas. However, it remains for mutation analysis to demonstrate whether the defect in XPE patients is in this gene or the gene encoding the small subunit. In addition, Best vitelliform mascular dystrophy is mapped to the same region as this gene on 11q, but no sequence alternations of this gene are demonstrated in Best disease patients. The protein encoded by this gene also functions as an adaptor molecule for the cullin 4 (CUL4) ubiquitin E3 ligase complex by facilitating the binding of substrates to this complex and the ubiquitination of proteins. [provided by RefSeq, May 2012]

POLA2 Gene

polymerase (DNA directed), alpha 2, accessory subunit

POLA1 Gene

polymerase (DNA directed), alpha 1, catalytic subunit

This gene encodes the catalytic subunit of DNA polymerase, which together with a regulatory and two primase subunits, forms the DNA polymerase alpha complex. The catalytic subunit plays an essential role in the initiation of DNA replication. [provided by RefSeq, Mar 2010]

POLR2KP2 Gene

polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 2

MMS22L Gene

MMS22-like, DNA repair protein

POLR3DP1 Gene

polymerase (RNA) III (DNA directed) polypeptide D, 44kDa pseudogene 1

TOP1MT Gene

topoisomerase (DNA) I, mitochondrial

This gene encodes a mitochondrial DNA topoisomerase that plays a role in the modification of DNA topology. The encoded protein is a type IB topoisomerase and catalyzes the transient breaking and rejoining of DNA to relieve tension and DNA supercoiling generated in the mitochondrial genome during replication and transcription. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, May 2012]

DNMT3B Gene

DNA (cytosine-5-)-methyltransferase 3 beta

CpG methylation is an epigenetic modification that is important for embryonic development, imprinting, and X-chromosome inactivation. Studies in mice have demonstrated that DNA methylation is required for mammalian development. This gene encodes a DNA methyltransferase which is thought to function in de novo methylation, rather than maintenance methylation. The protein localizes primarily to the nucleus and its expression is developmentally regulated. Mutations in this gene cause the immunodeficiency-centromeric instability-facial anomalies (ICF) syndrome. Eight alternatively spliced transcript variants have been described. The full length sequences of variants 4 and 5 have not been determined. [provided by RefSeq, May 2011]

DNMT3A Gene

DNA (cytosine-5-)-methyltransferase 3 alpha

CpG methylation is an epigenetic modification that is important for embryonic development, imprinting, and X-chromosome inactivation. Studies in mice have demonstrated that DNA methylation is required for mammalian development. This gene encodes a DNA methyltransferase that is thought to function in de novo methylation, rather than maintenance methylation. The protein localizes to the cytoplasm and nucleus and its expression is developmentally regulated. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

DNMT3L Gene

DNA (cytosine-5-)-methyltransferase 3-like

CpG methylation is an epigenetic modification that is important for embryonic development, imprinting, and X-chromosome inactivation. Studies in mice have demonstrated that DNA methylation is required for mammalian development. This gene encodes a nuclear protein with similarity to DNA methyltransferases, but is not thought to function as a DNA methyltransferase as it does not contain the amino acid residues necessary for methyltransferase activity. However, it does stimulate de novo methylation by DNA cytosine methyltransferase 3 alpha and is thought to be required for the establishment of maternal genomic imprints. This protein also mediates transcriptional repression through interaction with histone deacetylase 1. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2012]

LOC105373057 Gene

DNA-directed RNA polymerase II subunit RPB1-like

LOC642897 Gene

N-6 adenine-specific DNA methyltransferase 1 (putative) pseudogene

UNG Gene

uracil-DNA glycosylase

This gene encodes one of several uracil-DNA glycosylases. One important function of uracil-DNA glycosylases is to prevent mutagenesis by eliminating uracil from DNA molecules by cleaving the N-glycosylic bond and initiating the base-excision repair (BER) pathway. Uracil bases occur from cytosine deamination or misincorporation of dUMP residues. Alternative promoter usage and splicing of this gene leads to two different isoforms: the mitochondrial UNG1 and the nuclear UNG2. The UNG2 term was used as a previous symbol for the CCNO gene (GeneID 10309), which has been confused with this gene, in the literature and some databases. [provided by RefSeq, Nov 2010]

KIN Gene

Kin17 DNA and RNA binding protein

The protein encoded by this gene is a nuclear protein that forms intranuclear foci during proliferation and is redistributed in the nucleoplasm during the cell cycle. Short-wave ultraviolet light provokes the relocalization of the protein, suggesting its participation in the cellular response to DNA damage. Originally selected based on protein-binding with RecA antibodies, the mouse protein presents a limited similarity with a functional domain of the bacterial RecA protein, a characteristic shared by this human ortholog. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jan 2012]

POLR2J4 Gene

polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene

POLR2J2 Gene

polymerase (RNA) II (DNA directed) polypeptide J2

This gene is a member of the RNA polymerase II subunit 11 gene family, which includes three genes in a cluster on chromosome 7q22.1 and a pseudogene on chromosome 7p13. The founding member of this family, DNA directed RNA polymerase II polypeptide J, has been shown to encode a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This locus produces multiple, alternatively spliced transcripts that potentially express isoforms with distinct C-termini compared to DNA directed RNA polymerase II polypeptide J. Most or all variants are spliced to include additional non-coding exons at the 3' end which makes them candidates for nonsense-mediated decay (NMD). Consequently, it is not known if this locus expresses a protein or proteins in vivo. [provided by RefSeq, Jul 2008]

POLR2J3 Gene

polymerase (RNA) II (DNA directed) polypeptide J3

This gene is a member of the RNA polymerase II subunit 11 gene family, which includes three genes in a cluster on chromosome 7q22.1 and a pseudogene on chromosome 7p13. The founding member of this family, DNA directed RNA polymerase II polypeptide J, has been shown to encode a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This locus produces multiple, alternatively spliced transcripts that potentially express isoforms with distinct C-termini compared to DNA directed RNA polymerase II polypeptide J. Most or all variants are spliced to include additional non-coding exons at the 3' end which makes them candidates for nonsense-mediated decay (NMD). Consequently, it is not known if this locus expresses a protein or proteins in vivo. [provided by RefSeq, Jul 2008]

POLD2P1 Gene

polymerase (DNA directed), delta 2, accessory subunit pseudogene 1

POLR2E Gene

polymerase (RNA) II (DNA directed) polypeptide E, 25kDa

This gene encodes the fifth largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This subunit is shared by the other two DNA-directed RNA polymerases and is present in two-fold molar excess over the other polymerase subunits. An interaction between this subunit and a hepatitis virus transactivating protein has been demonstrated, suggesting that interaction between transcriptional activators and the polymerase can occur through this subunit. A pseudogene is located on chromosome 11. [provided by RefSeq, Jul 2008]

POLR2D Gene

polymerase (RNA) II (DNA directed) polypeptide D

This gene encodes the fourth largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. In yeast, this polymerase subunit is associated with the polymerase under suboptimal growth conditions and may have a stress protective role. A sequence for a ribosomal pseudogene is contained within the 3' untranslated region of the transcript from this gene. [provided by RefSeq, Jul 2008]

POLR2G Gene

polymerase (RNA) II (DNA directed) polypeptide G

This gene encodes the seventh largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The protein functions in transcription initiation, and is also thought to help stabilize transcribing polyermase molecules during elongation. [provided by RefSeq, Jan 2009]

POLR2F Gene

polymerase (RNA) II (DNA directed) polypeptide F

This gene encodes the sixth largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. In yeast, this polymerase subunit, in combination with at least two other subunits, forms a structure that stabilizes the transcribing polymerase on the DNA template. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]

POLR2A Gene

polymerase (RNA) II (DNA directed) polypeptide A, 220kDa

This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene contains a carboxy terminal domain composed of heptapeptide repeats that are essential for polymerase activity. These repeats contain serine and threonine residues that are phosphorylated in actively transcribing RNA polymerase. In addition, this subunit, in combination with several other polymerase subunits, forms the DNA binding domain of the polymerase, a groove in which the DNA template is transcribed into RNA. [provided by RefSeq, Jul 2008]

POLR2C Gene

polymerase (RNA) II (DNA directed) polypeptide C, 33kDa

This gene encodes the third largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene contains a cysteine rich region and exists as a heterodimer with another polymerase subunit, POLR2J. These two subunits form a core subassembly unit of the polymerase. A pseudogene has been identified on chromosome 21. [provided by RefSeq, Jul 2008]

POLR2B Gene

polymerase (RNA) II (DNA directed) polypeptide B, 140kDa

This gene encodes the second largest subunit of RNA polymerase II (Pol II), a DNA-dependent RNA polymerase that catalyzes the transcription of DNA into precursors of mRNA, snRNA and microRNA. This subunit and the largest subunit form opposite sides of the center cleft of Pol II. Deletion of the flap loop region of this subunit results in a decrease in the rate of transcriptional elongation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]

POLR2M Gene

polymerase (RNA) II (DNA directed) polypeptide M

This gene encodes a subunit of a specific form of RNA polymerase II termed Pol II(G). The encoded protein may act as a negative regulator of transcriptional activation by the Mediator complex. Alternative splicing results in multiple transcript variants. There is a pseudogene for this gene on chromosome 4. Readthrough transcription between this gene and the neighboring upstream gene MYZAP (myocardial zonula adherens protein) is represented with GeneID 145781. [provided by RefSeq, Oct 2013]

POLR2L Gene

polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa

This gene encodes a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene contains four conserved cysteines characteristic of an atypical zinc-binding domain. Like its counterpart in yeast, this subunit may be shared by the other two DNA-directed RNA polymerases. [provided by RefSeq, Jul 2008]

POLR2I Gene

polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa

This gene encodes a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This subunit, in combination with two other polymerase subunits, forms the DNA binding domain of the polymerase, a groove in which the DNA template is transcribed into RNA. The product of this gene has two zinc finger motifs with conserved cysteines and the subunit does possess zinc binding activity. [provided by RefSeq, Jul 2008]

POLR2H Gene

polymerase (RNA) II (DNA directed) polypeptide H

The three eukaryotic RNA polymerases are complex multisubunit enzymes that play a central role in the transcription of nuclear genes. This gene encodes an essential and highly conserved subunit of RNA polymerase II that is shared by the other two eukaryotic DNA-directed RNA polymerases, I and III. Alternative splicing results in multiple transcript variants of this gene. [provided by RefSeq, Jul 2013]

POLR2K Gene

polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa

This gene encodes one of the smallest subunits of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This subunit is shared by the other two DNA-directed RNA polymerases. [provided by RefSeq, Jul 2008]

POLR2J Gene

polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa

This gene encodes a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene exists as a heterodimer with another polymerase subunit; together they form a core subassembly unit of the polymerase. Two similar genes are located nearby on chromosome 7q22.1 and a pseudogene is found on chromosome 7p13. [provided by RefSeq, Jul 2008]

LOC196469 Gene

DNA dC->dU-editing enzyme APOBEC-3G-like

TOP3A Gene

topoisomerase (DNA) III alpha

This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This enzyme catalyzes the transient breaking and rejoining of a single strand of DNA which allows the strands to pass through one another, thus reducing the number of supercoils and altering the topology of DNA. This enzyme forms a complex with BLM which functions in the regulation of recombination in somatic cells. [provided by RefSeq, Jul 2008]

TOP3B Gene

topoisomerase (DNA) III beta

This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This enzyme catalyzes the transient breaking and rejoining of a single strand of DNA which allows the strands to pass through one another, thus relaxing the supercoils and altering the topology of DNA. The enzyme interacts with DNA helicase SGS1 and plays a role in DNA recombination, cellular aging and maintenance of genome stability. Low expression of this gene may be related to higher survival rates in breast cancer patients. This gene has a pseudogene on chromosome 22. Alternate splicing results in multiple transcript variants. Additional alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Aug 2013]

DMC1 Gene

DNA meiotic recombinase 1

This gene encodes a member of the superfamily of recombinases (also called DNA strand-exchange proteins). Recombinases are important for repairing double-strand DNA breaks during mitosis and meiosis. This protein, which is evolutionarily conserved, is reported to be essential for meiotic homologous recombination and may thus play an important role in generating diversity of genetic information. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2013]

SSBP1 Gene

single-stranded DNA binding protein 1, mitochondrial

SSBP1 is a housekeeping gene involved in mitochondrial biogenesis (Tiranti et al., 1995 [PubMed 7789991]). It is also a subunit of a single-stranded DNA (ssDNA)-binding complex involved in the maintenance of genome stability (Huang et al., 2009) [PubMed 19683501].[supplied by OMIM, Feb 2010]

SSBP3 Gene

single stranded DNA binding protein 3

SSBP2 Gene

single-stranded DNA binding protein 2

SSBP2 is a subunit of a single-stranded DNA (ssDNA)-binding complex involved in the maintenance of genome stability (Huang et al., 2009) [PubMed 19683501].[supplied by OMIM, Feb 2010]

LOC100422453 Gene

polymerase (DNA directed), delta 1, catalytic subunit 125kDa pseudogene

TOPBP1 Gene

topoisomerase (DNA) II binding protein 1

This gene encodes a binding protein which interacts with the C-terminal region of topoisomerase II beta. This interaction suggests a supportive role for this protein in the catalytic reactions of topoisomerase II beta through transient breakages of DNA strands. [provided by RefSeq, Jul 2008]

POLD1 Gene

polymerase (DNA directed), delta 1, catalytic subunit

This gene encodes the 125-kDa catalytic subunit of DNA polymerase delta. DNA polymerase delta possesses both polymerase and 3' to 5' exonuclease activity and plays a critical role in DNA replication and repair. Alternatively spliced transcript variants have been observed for this gene, and a pseudogene of this gene is located on the long arm of chromosome 6. [provided by RefSeq, Mar 2012]

POLD2 Gene

polymerase (DNA directed), delta 2, accessory subunit

This gene encodes the 50-kDa catalytic subunit of DNA polymerase delta. DNA polymerase delta possesses both polymerase and 3' to 5' exonuclease activity and plays a critical role in DNA replication and repair. The encoded protein is required for the stimulation of DNA polymerase delta activity by the processivity cofactor proliferating cell nuclear antigen (PCNA). Expression of this gene may be a marker for ovarian carcinomas. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the long arm of chromosome 5. [provided by RefSeq, Mar 2012]

POLD3 Gene

polymerase (DNA-directed), delta 3, accessory subunit

This gene encodes the 66-kDa subunit of DNA polymerase delta. DNA polymerase delta possesses both polymerase and 3' to 5' exonuclease activity and plays a critical role in DNA replication and repair. The encoded protein plays a role in regulating the activity of DNA polymerase delta through interactions with other subunits and the processivity cofactor proliferating cell nuclear antigen (PCNA). Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Mar 2012]

ID4 Gene

inhibitor of DNA binding 4, dominant negative helix-loop-helix protein

This gene encodes a member of the inhibitor of DNA binding (ID) protein family. These proteins are basic helix-loop-helix transcription factors which can act as tumor suppressors but lack DNA binding activity. Consequently, the activity of the encoded protein depends on the protein binding partner. [provided by RefSeq, Dec 2011]

ID2 Gene

inhibitor of DNA binding 2, dominant negative helix-loop-helix protein

The protein encoded by this gene belongs to the inhibitor of DNA binding family, members of which are transcriptional regulators that contain a helix-loop-helix (HLH) domain but not a basic domain. Members of the inhibitor of DNA binding family inhibit the functions of basic helix-loop-helix transcription factors in a dominant-negative manner by suppressing their heterodimerization partners through the HLH domains. This protein may play a role in negatively regulating cell differentiation. A pseudogene of this gene is located on chromosome 3. [provided by RefSeq, Aug 2011]

ID3 Gene

inhibitor of DNA binding 3, dominant negative helix-loop-helix protein

The protein encoded by this gene is a helix-loop-helix (HLH) protein that can form heterodimers with other HLH proteins. However, the encoded protein lacks a basic DNA-binding domain and therefore inhibits the DNA binding of any HLH protein with which it interacts. [provided by RefSeq, Aug 2011]

ID1 Gene

inhibitor of DNA binding 1, dominant negative helix-loop-helix protein

The protein encoded by this gene is a helix-loop-helix (HLH) protein that can form heterodimers with members of the basic HLH family of transcription factors. The encoded protein has no DNA binding activity and therefore can inhibit the DNA binding and transcriptional activation ability of basic HLH proteins with which it interacts. This protein may play a role in cell growth, senescence, and differentiation. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

LOC400174 Gene

single stranded DNA binding protein 4 pseudogene

GCFC2 Gene

GC-rich sequence DNA-binding factor 2

The first mRNA transcript isolated for this gene was part of an artificial chimera derived from two distinct gene transcripts and a primer used in the cloning process (see Genbank accession M29204). A positively charged amino terminus present only in the chimera was determined to bind GC-rich DNA, thus mistakenly thought to identify a transcription factor gene. [provided by RefSeq, Jul 2008]

LOC100420880 Gene

primase, DNA, polypeptide 1 (49kDa) pseudogene

POLRMTP1 Gene

polymerase (RNA) mitochondrial (DNA directed) pseudogene 1

LOC100133137 Gene

geminin, DNA replication inhibitor pseudogene 2

DDIAS Gene

DNA damage-induced apoptosis suppressor

TOP1 Gene

topoisomerase (DNA) I

This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This enzyme catalyzes the transient breaking and rejoining of a single strand of DNA which allows the strands to pass through one another, thus altering the topology of DNA. This gene is localized to chromosome 20 and has pseudogenes which reside on chromosomes 1 and 22. [provided by RefSeq, Jul 2008]

PRIM2B Gene

primase, DNA, polypeptide 2 (58kDa) pseudogene

TONSL Gene

tonsoku-like, DNA repair protein

The protein encoded by this gene is thought to be a negative regulator of NF-kappa-B mediated transcription. The encoded protein may bind NF-kappa-B complexes and trap them in the cytoplasm, preventing them from entering the nucleus and interacting with the DNA. Phosphorylation of this protein targets it for degradation by the ubiquitination pathway, which frees the NF-kappa-B complexes to enter the nucleus. [provided by RefSeq, Jul 2008]

LOC100421824 Gene

polymerase (DNA directed), epsilon 2, accessory subunit pseudogene

UNGP1 Gene

uracil-DNA glycosylase pseudogene 1

UNGP3 Gene

uracil-DNA glycosylase pseudogene 3

UNGP2 Gene

uracil-DNA glycosylase pseudogene 2

DNCM Gene

DNA associated with cytoplasmic membrane

SMUG1P1 Gene

single-strand-selective monofunctional uracil-DNA glycosylase 1 pseudogene 1

LOC100130321 Gene

DNA fragmentation factor, 45kDa, alpha polypeptide pseudogene

POLG2 Gene

polymerase (DNA directed), gamma 2, accessory subunit

This gene encodes the processivity subunit of the mitochondrial DNA polymerase gamma. The encoded protein forms a heterotrimer containing one catalytic subunit and two processivity subunits. This protein enhances DNA binding and promotes processive DNA synthesis. Mutations in this gene result in autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions.[provided by RefSeq, Sep 2009]

MDC1 Gene

mediator of DNA-damage checkpoint 1

The protein encoded by this gene contains an N-terminal forkhead domain, two BRCA1 C-terminal (BRCT) motifs and a central domain with 13 repetitions of an approximately 41-amino acid sequence. The encoded protein is required to activate the intra-S phase and G2/M phase cell cycle checkpoints in response to DNA damage. This nuclear protein interacts with phosphorylated histone H2AX near sites of DNA double-strand breaks through its BRCT motifs, and facilitates recruitment of the ATM kinase and meiotic recombination 11 protein complex to DNA damage foci. [provided by RefSeq, Jul 2008]

PANDAR Gene

promoter of CDKN1A antisense DNA damage activated RNA

dna ligase iv deficiency Gene Set

From DISEASES Text-mining Gene-Disease Assocation Evidence Scores

genes co-occuring with the disease dna ligase iv deficiency in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.

dna-dependent protein kinase-dna ligase 4 complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-dependent protein kinase-dna ligase 4 complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

DNA ligase IV-Xrcc4-DNA-protein kinase complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase IV-Xrcc4-DNA-protein kinase complex protein complex from the CORUM Protein Complexes dataset.

DNA ligase III-XRCC1-PNK-DNA-pol III multiprotein complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase III-XRCC1-PNK-DNA-pol III multiprotein complex protein complex from the CORUM Protein Complexes dataset.

dna-dependent protein kinase-dna ligase 4 complex Gene Set

From GO Cellular Component Annotations

proteins localized to the dna-dependent protein kinase-dna ligase 4 complex cellular component from the curated GO Cellular Component Annotations dataset.

dna ligase i deficiency Gene Set

From OMIM Gene-Disease Associations

genes associated with the dna ligase i deficiency phenotype from the curated OMIM Gene-Disease Associations dataset.

DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu protein domain from the InterPro Predicted Protein Domain Annotations dataset.

choline deficiency; dna damage; folic acid deficiency Gene Set

From GAD Gene-Disease Associations

genes associated with the disease choline deficiency; dna damage; folic acid deficiency in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

factor v deficiency; hypoprothrombinemias; protein c deficiency; protein s deficiency; pulmonary embolism; thrombophilia; venous thrombosis Gene Set

From GAD Gene-Disease Associations

genes associated with the disease factor v deficiency; hypoprothrombinemias; protein c deficiency; protein s deficiency; pulmonary embolism; thrombophilia; venous thrombosis in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

antithrombin iii deficiency; gastrointestinal hemorrhage; protein c deficiency; protein s deficiency; splenomegaly; thrombophilia; turner syndrome; venous thrombosis; xo syndrome Gene Set

From GAD Gene-Disease Associations

genes associated with the disease antithrombin iii deficiency; gastrointestinal hemorrhage; protein c deficiency; protein s deficiency; splenomegaly; thrombophilia; turner syndrome; venous thrombosis; xo syndrome in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

activated protein c resistance; antithrombin iii deficiency; pregnancy complications, hematologic; protein c deficiency; protein s deficiency; puerperal disorders; pulmonary embolism; pulmonary embolisms; thrombophilia; venous thrombosis Gene Set

From GAD Gene-Disease Associations

genes associated with the disease activated protein c resistance; antithrombin iii deficiency; pregnancy complications, hematologic; protein c deficiency; protein s deficiency; puerperal disorders; pulmonary embolism; pulmonary embolisms; thrombophilia; venous thrombosis in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

dna ligase iv complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna ligase iv complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna ligase iv complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna ligase iv complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna ligase iii-xrcc1 complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna ligase iii-xrcc1 complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

DNA ligase IV-XRCC4-AHNK complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase IV-XRCC4-AHNK complex protein complex from the CORUM Protein Complexes dataset.

DNA ligase IV-XRCC4 complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase IV-XRCC4 complex protein complex from the CORUM Protein Complexes dataset.

DNA ligase IV-condensin complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase IV-condensin complex protein complex from the CORUM Protein Complexes dataset.

DNA ligase IV-XRCC4-XLF complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase IV-XRCC4-XLF complex protein complex from the CORUM Protein Complexes dataset.

DNA ligase IV-XRCC4 complex (LX complex) Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase IV-XRCC4 complex (LX complex) protein complex from the CORUM Protein Complexes dataset.

DNA ligase IV-XRCC1 complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase IV-XRCC1 complex protein complex from the CORUM Protein Complexes dataset.

PCNA-DNA ligase complex Gene Set

From CORUM Protein Complexes

proteins in the PCNA-DNA ligase complex protein complex from the CORUM Protein Complexes dataset.

DNA ligase III-XRCC1 complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase III-XRCC1 complex protein complex from the CORUM Protein Complexes dataset.

DNA ligase IV-XRCC4-PNK complex Gene Set

From CORUM Protein Complexes

proteins in the DNA ligase IV-XRCC4-PNK complex protein complex from the CORUM Protein Complexes dataset.

dna ligase iv complex Gene Set

From GO Cellular Component Annotations

proteins localized to the dna ligase iv complex cellular component from the curated GO Cellular Component Annotations dataset.

dna ligase (atp) activity Gene Set

From GO Molecular Function Annotations

genes performing the dna ligase (atp) activity molecular function from the curated GO Molecular Function Annotations dataset.

dna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the dna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

DNA ligase, ATP-dependent, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA ligase, ATP-dependent, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA ligase, ATP-dependent, central Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA ligase, ATP-dependent, central protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA ligase, ATP-dependent, C-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA ligase, ATP-dependent, C-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA ligase IV domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA ligase IV domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA ligase 4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA ligase 4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA ligase, ATP-dependent Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA ligase, ATP-dependent protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA ligase, ATP-dependent, N-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA ligase, ATP-dependent, N-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

dna synthesis involved in dna repair Gene Set

From GO Biological Process Annotations

genes participating in the dna synthesis involved in dna repair biological process from the curated GO Biological Process Annotations dataset.

dna-dependent dna replication Gene Set

From GO Biological Process Annotations

genes participating in the dna-dependent dna replication biological process from the curated GO Biological Process Annotations dataset.

dna damage response, detection of dna damage Gene Set

From GO Biological Process Annotations

genes participating in the dna damage response, detection of dna damage biological process from the curated GO Biological Process Annotations dataset.

positive regulation of dna-dependent dna replication initiation Gene Set

From GO Biological Process Annotations

genes participating in the positive regulation of dna-dependent dna replication initiation biological process from the curated GO Biological Process Annotations dataset.

dna dealkylation involved in dna repair Gene Set

From GO Biological Process Annotations

genes participating in the dna dealkylation involved in dna repair biological process from the curated GO Biological Process Annotations dataset.

dna strand elongation involved in dna replication Gene Set

From GO Biological Process Annotations

genes participating in the dna strand elongation involved in dna replication biological process from the curated GO Biological Process Annotations dataset.

regulation of dna-dependent dna replication initiation Gene Set

From GO Biological Process Annotations

genes participating in the regulation of dna-dependent dna replication initiation biological process from the curated GO Biological Process Annotations dataset.

regulation of dna-dependent dna replication Gene Set

From GO Biological Process Annotations

genes participating in the regulation of dna-dependent dna replication biological process from the curated GO Biological Process Annotations dataset.

dna ligation involved in dna recombination Gene Set

From GO Biological Process Annotations

genes participating in the dna ligation involved in dna recombination biological process from the curated GO Biological Process Annotations dataset.

positive regulation of dna-dependent dna replication Gene Set

From GO Biological Process Annotations

genes participating in the positive regulation of dna-dependent dna replication biological process from the curated GO Biological Process Annotations dataset.

negative regulation of dna-dependent dna replication Gene Set

From GO Biological Process Annotations

genes participating in the negative regulation of dna-dependent dna replication biological process from the curated GO Biological Process Annotations dataset.

dna ligation involved in dna repair Gene Set

From GO Biological Process Annotations

genes participating in the dna ligation involved in dna repair biological process from the curated GO Biological Process Annotations dataset.

dna-dependent dna replication maintenance of fidelity Gene Set

From GO Biological Process Annotations

genes participating in the dna-dependent dna replication maintenance of fidelity biological process from the curated GO Biological Process Annotations dataset.

dna unwinding involved in dna replication Gene Set

From GO Biological Process Annotations

genes participating in the dna unwinding involved in dna replication biological process from the curated GO Biological Process Annotations dataset.

single-stranded dna-dependent atp-dependent dna helicase activity Gene Set

From GO Molecular Function Annotations

genes performing the single-stranded dna-dependent atp-dependent dna helicase activity molecular function from the curated GO Molecular Function Annotations dataset.

dna-directed dna polymerase activity Gene Set

From GO Molecular Function Annotations

genes performing the dna-directed dna polymerase activity molecular function from the curated GO Molecular Function Annotations dataset.

DNA-directed DNA polymerase, family B, exonuclease domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA polymerase, family B, exonuclease domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA polymerase, family B, multifunctional domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA polymerase, family B, multifunctional domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA glycosylase/AP lyase, H2TH DNA-binding Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA glycosylase/AP lyase, H2TH DNA-binding protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA polymerase, family B, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA polymerase, family B, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA-polymerase, family A, mitochondria Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA-polymerase, family A, mitochondria protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Zinc finger, DNA-directed DNA polymerase, family B, alpha Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Zinc finger, DNA-directed DNA polymerase, family B, alpha protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA topoisomerase I, DNA binding, eukaryotic-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA topoisomerase I, DNA binding, eukaryotic-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA topoisomerase, type IA, DNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA topoisomerase, type IA, DNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA polymerase X Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA polymerase X protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA helicase (DNA repair), Rad3 type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA helicase (DNA repair), Rad3 type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA/RNA polymerase mu Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA/RNA polymerase mu protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA polymerase, family A, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA polymerase, family A, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA polymerase, family A, palm domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA polymerase, family A, palm domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA polymerase, family B Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA polymerase, family B protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Translesion synthesis by DNA polymerases bypassing lesion on DNA template Gene Set

From Reactome Pathways

proteins participating in the Translesion synthesis by DNA polymerases bypassing lesion on DNA template pathway from the Reactome Pathways dataset.

Integration of viral DNA into host genomic DNA Gene Set

From Reactome Pathways

proteins participating in the Integration of viral DNA into host genomic DNA pathway from the Reactome Pathways dataset.

DNA Repair-Deficiency Disorders Gene Set

From CTD Gene-Disease Associations

genes/proteins associated with the disease DNA Repair-Deficiency Disorders from the curated CTD Gene-Disease Associations dataset.

NATURAL KILLER CELL AND GLUCOCORTICOID DEFICIENCY WITH DNA REPAIR DEFECT Gene Set

From CTD Gene-Disease Associations

genes/proteins associated with the disease NATURAL KILLER CELL AND GLUCOCORTICOID DEFICIENCY WITH DNA REPAIR DEFECT from the curated CTD Gene-Disease Associations dataset.

DNA Repair-Deficiency Disorders Gene Set

From HuGE Navigator Gene-Phenotype Associations

genes associated with the DNA Repair-Deficiency Disorders phenotype by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.

natural killer cell and glucocorticoid deficiency with dna repair defect Gene Set

From OMIM Gene-Disease Associations

genes associated with the natural killer cell and glucocorticoid deficiency with dna repair defect phenotype from the curated OMIM Gene-Disease Associations dataset.

Neuraminidase deficiency with beta-galactosidase deficiency Gene Set

From CTD Gene-Disease Associations

genes/proteins associated with the disease Neuraminidase deficiency with beta-galactosidase deficiency from the curated CTD Gene-Disease Associations dataset.

MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 1;MC5DN1 MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, ATPAF2 TYPE Gene Set

From CTD Gene-Disease Associations

genes/proteins associated with the disease MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 1;MC5DN1 MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, ATPAF2 TYPE from the curated CTD Gene-Disease Associations dataset.

eclampsia; pre-eclampsia; protein c deficiency; protein s deficiency; thrombophilia Gene Set

From GAD Gene-Disease Associations

genes associated with the disease eclampsia; pre-eclampsia; protein c deficiency; protein s deficiency; thrombophilia in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

blood coagulation disorders, inherited; protein c deficiency; protein s deficiency; thrombophilia; venous thrombosis Gene Set

From GAD Gene-Disease Associations

genes associated with the disease blood coagulation disorders, inherited; protein c deficiency; protein s deficiency; thrombophilia; venous thrombosis in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

blood coagulation disorders; protein c deficiency; protein s deficiency; pulmonary embolism; pulmonary embolisms; thrombosis; venous thrombosis Gene Set

From GAD Gene-Disease Associations

genes associated with the disease blood coagulation disorders; protein c deficiency; protein s deficiency; pulmonary embolism; pulmonary embolisms; thrombosis; venous thrombosis in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

anemia, iron-deficiency; iron deficiency anaemia; tuberculosis, pulmonary Gene Set

From GAD Gene-Disease Associations

genes associated with the disease anemia, iron-deficiency; iron deficiency anaemia; tuberculosis, pulmonary in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

folic acid deficiency; fractures, bone; osteoporosis, postmenopausal; riboflavin deficiency Gene Set

From GAD Gene-Disease Associations

genes associated with the disease folic acid deficiency; fractures, bone; osteoporosis, postmenopausal; riboflavin deficiency in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

activated protein c resistance; blood coagulation disorders; liver diseases; protein c deficiency; protein s deficiency; thrombosis Gene Set

From GAD Gene-Disease Associations

genes associated with the disease activated protein c resistance; blood coagulation disorders; liver diseases; protein c deficiency; protein s deficiency; thrombosis in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

anemia, iron-deficiency; hemochromatosis; iron deficiency anaemia; iron overload Gene Set

From GAD Gene-Disease Associations

genes associated with the disease anemia, iron-deficiency; hemochromatosis; iron deficiency anaemia; iron overload in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

folic acid deficiency; pregnancy complications; prenatal exposure delayed effects; psychomotor disorders; vitamin b 12 deficiency Gene Set

From GAD Gene-Disease Associations

genes associated with the disease folic acid deficiency; pregnancy complications; prenatal exposure delayed effects; psychomotor disorders; vitamin b 12 deficiency in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

anemia, iron-deficiency; beta thalassemia; beta-thalassemia; iron deficiency anaemia Gene Set

From GAD Gene-Disease Associations

genes associated with the disease anemia, iron-deficiency; beta thalassemia; beta-thalassemia; iron deficiency anaemia in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

anemia, iron-deficiency; iron deficiency anaemia Gene Set

From GAD Gene-Disease Associations

genes associated with the disease anemia, iron-deficiency; iron deficiency anaemia in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

protein c deficiency; protein s deficiency; venous thrombosis Gene Set

From GAD Gene-Disease Associations

genes associated with the disease protein c deficiency; protein s deficiency; venous thrombosis in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

folic acid deficiency; hyperhomocysteinemia; thromboembolism; venous insufficiency; vitamin b 12 deficiency Gene Set

From GAD Gene-Disease Associations

genes associated with the disease folic acid deficiency; hyperhomocysteinemia; thromboembolism; venous insufficiency; vitamin b 12 deficiency in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

anemia, iron-deficiency; iron deficiency anaemia; iron overload Gene Set

From GAD Gene-Disease Associations

genes associated with the disease anemia, iron-deficiency; iron deficiency anaemia; iron overload in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

neoplasms; protein c deficiency; protein s deficiency; venous thromboembolism Gene Set

From GAD Gene-Disease Associations

genes associated with the disease neoplasms; protein c deficiency; protein s deficiency; venous thromboembolism in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

anemia, iron-deficiency; hemochromatosis; iron deficiency anaemia Gene Set

From GAD Gene-Disease Associations

genes associated with the disease anemia, iron-deficiency; hemochromatosis; iron deficiency anaemia in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

chronic renal failure; folic acid deficiency; hyperhomocysteinemia; kidney failure, chronic; vitamin b 12 deficiency Gene Set

From GAD Gene-Disease Associations

genes associated with the disease chronic renal failure; folic acid deficiency; hyperhomocysteinemia; kidney failure, chronic; vitamin b 12 deficiency in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

Defective GSS causes Glutathione synthetase deficiency (GSS deficiency) Gene Set

From Reactome Pathways

proteins participating in the Defective GSS causes Glutathione synthetase deficiency (GSS deficiency) pathway from the Reactome Pathways dataset.

Defective CYP11B2 causes Corticosterone methyloxidase 1 deficiency (CMO-1 deficiency) Gene Set

From Reactome Pathways

proteins participating in the Defective CYP11B2 causes Corticosterone methyloxidase 1 deficiency (CMO-1 deficiency) pathway from the Reactome Pathways dataset.

Defective TPMT causes Thiopurine S-methyltransferase deficiency (TPMT deficiency) Gene Set

From Reactome Pathways

proteins participating in the Defective TPMT causes Thiopurine S-methyltransferase deficiency (TPMT deficiency) pathway from the Reactome Pathways dataset.

brca1 dependent ub ligase activity Gene Set

From Biocarta Pathways

proteins participating in the brca1 dependent ub ligase activity pathway from the Biocarta Pathways dataset.

glutamate-cysteine ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the glutamate-cysteine ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cul5-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cul5-ring ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

trna-splicing ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the trna-splicing ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

succinate-coa ligase complex (gdp-forming) Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the succinate-coa ligase complex (gdp-forming) cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

hrd1p ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the hrd1p ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

nuclear ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the nuclear ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cul4-ring e3 ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cul4-ring e3 ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

succinate-coa ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the succinate-coa ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cytoplasmic ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cytoplasmic ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cul2-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cul2-ring ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cullin-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cullin-ring ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

er ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the er ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cul3-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cul3-ring ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cul4b-ring e3 ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cul4b-ring e3 ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cul7-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cul7-ring ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

scf ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the scf ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

cul4a-ring e3 ubiquitin ligase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the cul4a-ring e3 ubiquitin ligase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

doa10p ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the doa10p ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

trna-splicing ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the trna-splicing ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

succinate-coa ligase complex (gdp-forming) Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the succinate-coa ligase complex (gdp-forming) cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dsc e3 ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dsc e3 ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

hrd1p ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the hrd1p ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

nuclear ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the nuclear ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

scf ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the scf ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cul4-ring e3 ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cul4-ring e3 ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

succinate-coa ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the succinate-coa ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cytoplasmic ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cytoplasmic ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cul2-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cul2-ring ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cytoplasmic scf ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cytoplasmic scf ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

er ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the er ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cul5-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cul5-ring ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cul4b-ring e3 ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cul4b-ring e3 ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cul7-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cul7-ring ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

succinate-coa ligase complex (adp-forming) Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the succinate-coa ligase complex (adp-forming) cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cul4a-ring e3 ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cul4a-ring e3 ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

clrc ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the clrc ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cullin-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cullin-ring ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

cul3-ring ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the cul3-ring ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

sumo-targeted ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the sumo-targeted ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

nuclear scf ubiquitin ligase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the nuclear scf ubiquitin ligase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Ubiquitin E3 ligase (TRIM25, DDX58) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (TRIM25, DDX58) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin-protein ligase (UBE2N, UBE2V2/MMS2) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin-protein ligase (UBE2N, UBE2V2/MMS2) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CRY1, SKP1A, CUL1, FBXL3) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CRY1, SKP1A, CUL1, FBXL3) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (NFKBIA, FBXW11, BTRC, CUL1, SKP1A) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (NFKBIA, FBXW11, BTRC, CUL1, SKP1A) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (SMAD3, BTRC, CUL1, SKP1A, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (SMAD3, BTRC, CUL1, SKP1A, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CRY2, SKP1A, CUL1, FBXL3) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CRY2, SKP1A, CUL1, FBXL3) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (FBXO18, SKP1A, CUL1, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (FBXO18, SKP1A, CUL1, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (NIPA, SKP1A, CUL1, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (NIPA, SKP1A, CUL1, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (Fbxo32, Skp1a, Cul1, Rbx1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (Fbxo32, Skp1a, Cul1, Rbx1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (ASB1, TCEB1, TCEB2, CUL5, RNF7) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (ASB1, TCEB1, TCEB2, CUL5, RNF7) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (Fbxl20, Skp1, Cul1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (Fbxl20, Skp1, Cul1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (ASB6, TCEB1, TCEB2, CUL5, RNF7) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (ASB6, TCEB1, TCEB2, CUL5, RNF7) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (VHL, TCEB1, TCEB2, CUL2) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (VHL, TCEB1, TCEB2, CUL2) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CDC34, CUL1, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CDC34, CUL1, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (FBXO31, SKP1A, CUL1, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (FBXO31, SKP1A, CUL1, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin-protein-ligase (UBE2N, UBE2V2/MMS2) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin-protein-ligase (UBE2N, UBE2V2/MMS2) protein complex from the CORUM Protein Complexes dataset.

p27-cyclinE-Cdk2 - Ubiquitin E3 ligase (SKP1A, SKP2, CUL1, CKS1B, RBX1) complex Gene Set

From CORUM Protein Complexes

proteins in the p27-cyclinE-Cdk2 - Ubiquitin E3 ligase (SKP1A, SKP2, CUL1, CKS1B, RBX1) complex protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (SKP1A, FBXW2, CUL1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (SKP1A, FBXW2, CUL1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (WSB1, TCEB1, TCEB2, CUL5, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (WSB1, TCEB1, TCEB2, CUL5, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (SKP1A, SKP2, CUL1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (SKP1A, SKP2, CUL1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (Fbxo15, Cul1, Skp1a) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (Fbxo15, Cul1, Skp1a) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (DDB1, DDB2, CUL4A, CUL4B, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (DDB1, DDB2, CUL4A, CUL4B, RBX1) protein complex from the CORUM Protein Complexes dataset.

Neddylin ligase (FBXO11, SKP1, CUL1, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Neddylin ligase (FBXO11, SKP1, CUL1, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (Fbxo2, Skp1a, Cul1, Rbx1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (Fbxo2, Skp1a, Cul1, Rbx1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (SKP1A, FBXW8, CUL7, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (SKP1A, FBXW8, CUL7, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (NFKBIA, BTRC, CUL1, SKP1A) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (NFKBIA, BTRC, CUL1, SKP1A) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (H2AFY, SPOP, CUL3) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (H2AFY, SPOP, CUL3) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (ASB7, TCEB1, TCEB2, CUL5, RNF7) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (ASB7, TCEB1, TCEB2, CUL5, RNF7) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (DDB1, CUL4A, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (DDB1, CUL4A, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (SIAH1, SIP, SKP1A, TBL1X) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (SIAH1, SIP, SKP1A, TBL1X) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CDT1, DDB1, CUL4A, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CDT1, DDB1, CUL4A, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (DET1, DDB1, CUL4A, RBX1, COP1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (DET1, DDB1, CUL4A, RBX1, COP1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CDC34, NEDD8, BTRC, CUL1, SKP1A, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CDC34, NEDD8, BTRC, CUL1, SKP1A, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (NFKBIA, FBXW11, CUL1, SKP1A) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (NFKBIA, FBXW11, CUL1, SKP1A) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (ASB12, TCEB1, TCEB2, CUL5, RNF7) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (ASB12, TCEB1, TCEB2, CUL5, RNF7) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (SKP1A, BTRC, CUL1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (SKP1A, BTRC, CUL1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CHEK1, CUL4A) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CHEK1, CUL4A) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (SKP1A, SKP2, CUL1, CKS1B, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (SKP1A, SKP2, CUL1, CKS1B, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CUL1, RBX1, SKP1A) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CUL1, RBX1, SKP1A) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (UBADC1, RNF123) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (UBADC1, RNF123) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (GLMN, FBXW8, SKP1A, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (GLMN, FBXW8, SKP1A, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (AHR, ARNT, DDB1, TBL3, CUL4B, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (AHR, ARNT, DDB1, TBL3, CUL4B, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (BMI1, SPOP, CUL3) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (BMI1, SPOP, CUL3) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (Skp1A, Skp2, Cul1, Rbx1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (Skp1A, Skp2, Cul1, Rbx1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin ligase complex (TRAF6, TAB2, MALT1, UEV1A, BCL10) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin ligase complex (TRAF6, TAB2, MALT1, UEV1A, BCL10) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (ASB2, TCEB1, TCEB2, CUL5, RNF7) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (ASB2, TCEB1, TCEB2, CUL5, RNF7) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (FBXW11, SKP1A, CUL1, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (FBXW11, SKP1A, CUL1, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (FBXW7, CUL1, SKP1A, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (FBXW7, CUL1, SKP1A, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CHEK1, CUL1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CHEK1, CUL1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (CSN1, CSN8, HRT1, SKP1, SKP2, CUL1, CUL2, CUL3) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (CSN1, CSN8, HRT1, SKP1, SKP2, CUL1, CUL2, CUL3) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (VHL, TCEB1, TCEB2, CUL2, RBX1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (VHL, TCEB1, TCEB2, CUL2, RBX1) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (SPOP, DAXX, CUL3) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (SPOP, DAXX, CUL3) protein complex from the CORUM Protein Complexes dataset.

Ubiquitin E3 ligase (Neurl2, Tceb1, Tceb2, Cul5, Rbx1) Gene Set

From CORUM Protein Complexes

proteins in the Ubiquitin E3 ligase (Neurl2, Tceb1, Tceb2, Cul5, Rbx1) protein complex from the CORUM Protein Complexes dataset.

ligase Gene Set

From GeneRIF Biological Term Annotations

genes co-occuring with the biological term ligase in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

regulation of glutamate-cysteine ligase activity Gene Set

From GO Biological Process Annotations

genes participating in the regulation of glutamate-cysteine ligase activity biological process from the curated GO Biological Process Annotations dataset.

positive regulation of glutamate-cysteine ligase activity Gene Set

From GO Biological Process Annotations

genes participating in the positive regulation of glutamate-cysteine ligase activity biological process from the curated GO Biological Process Annotations dataset.

regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Gene Set

From GO Biological Process Annotations

genes participating in the regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle biological process from the curated GO Biological Process Annotations dataset.

negative regulation of ligase activity Gene Set

From GO Biological Process Annotations

genes participating in the negative regulation of ligase activity biological process from the curated GO Biological Process Annotations dataset.

positive regulation of ligase activity Gene Set

From GO Biological Process Annotations

genes participating in the positive regulation of ligase activity biological process from the curated GO Biological Process Annotations dataset.

regulation of ligase activity Gene Set

From GO Biological Process Annotations

genes participating in the regulation of ligase activity biological process from the curated GO Biological Process Annotations dataset.

negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Gene Set

From GO Biological Process Annotations

genes participating in the negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle biological process from the curated GO Biological Process Annotations dataset.

positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition Gene Set

From GO Biological Process Annotations

genes participating in the positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition biological process from the curated GO Biological Process Annotations dataset.

cul5-ring ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cul5-ring ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

trna-splicing ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the trna-splicing ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

succinate-coa ligase complex (gdp-forming) Gene Set

From GO Cellular Component Annotations

proteins localized to the succinate-coa ligase complex (gdp-forming) cellular component from the curated GO Cellular Component Annotations dataset.

parkin-fbxw7-cul1 ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the parkin-fbxw7-cul1 ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

hrd1p ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the hrd1p ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

nuclear ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the nuclear ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

scf ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the scf ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

cul4-ring e3 ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cul4-ring e3 ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

succinate-coa ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the succinate-coa ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

cytoplasmic ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cytoplasmic ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

cul2-ring ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cul2-ring ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

cullin-ring ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cullin-ring ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

er ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the er ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

cul4b-ring e3 ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cul4b-ring e3 ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

cul7-ring ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cul7-ring ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

glutamate-cysteine ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the glutamate-cysteine ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

cul4a-ring e3 ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cul4a-ring e3 ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

sumoylated e2 ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the sumoylated e2 ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

cul3-ring ubiquitin ligase complex Gene Set

From GO Cellular Component Annotations

proteins localized to the cul3-ring ubiquitin ligase complex cellular component from the curated GO Cellular Component Annotations dataset.

tryptophan-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the tryptophan-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase regulator activity Gene Set

From GO Molecular Function Annotations

genes performing the ligase regulator activity molecular function from the curated GO Molecular Function Annotations dataset.

fatty acid ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the fatty acid ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase inhibitor activity Gene Set

From GO Molecular Function Annotations

genes performing the ligase inhibitor activity molecular function from the curated GO Molecular Function Annotations dataset.

succinate-coa ligase (gdp-forming) activity Gene Set

From GO Molecular Function Annotations

genes performing the succinate-coa ligase (gdp-forming) activity molecular function from the curated GO Molecular Function Annotations dataset.

carbon-nitrogen ligase activity, with glutamine as amido-n-donor Gene Set

From GO Molecular Function Annotations

genes performing the carbon-nitrogen ligase activity, with glutamine as amido-n-donor molecular function from the curated GO Molecular Function Annotations dataset.

asparagine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the asparagine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

glutamate-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the glutamate-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

tubulin-tyrosine ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the tubulin-tyrosine ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase activity, forming carbon-carbon bonds Gene Set

From GO Molecular Function Annotations

genes performing the ligase activity, forming carbon-carbon bonds molecular function from the curated GO Molecular Function Annotations dataset.

ubiquitin protein ligase binding Gene Set

From GO Molecular Function Annotations

genes performing the ubiquitin protein ligase binding molecular function from the curated GO Molecular Function Annotations dataset.

glutamate-ammonia ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the glutamate-ammonia ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

succinate-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the succinate-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

rna ligase (atp) activity Gene Set

From GO Molecular Function Annotations

genes performing the rna ligase (atp) activity molecular function from the curated GO Molecular Function Annotations dataset.

phosphoribosylformylglycinamidine cyclo-ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the phosphoribosylformylglycinamidine cyclo-ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

acid-amino acid ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the acid-amino acid ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

glutamine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the glutamine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

glutamate-trna(gln) ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the glutamate-trna(gln) ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

protein-glycine ligase activity, initiating Gene Set

From GO Molecular Function Annotations

genes performing the protein-glycine ligase activity, initiating molecular function from the curated GO Molecular Function Annotations dataset.

biotin-[propionyl-coa-carboxylase (atp-hydrolyzing)] ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the biotin-[propionyl-coa-carboxylase (atp-hydrolyzing)] ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

long-chain fatty acid-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the long-chain fatty acid-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

aspartate-trna(asn) ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the aspartate-trna(asn) ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

acid-ammonia (or amide) ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the acid-ammonia (or amide) ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

biotin-[methylcrotonoyl-coa-carboxylase] ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the biotin-[methylcrotonoyl-coa-carboxylase] ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

valine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the valine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

aminoacyl-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the aminoacyl-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ubiquitin protein ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the ubiquitin protein ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

biotin-[acetyl-coa-carboxylase] ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the biotin-[acetyl-coa-carboxylase] ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

arginine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the arginine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase activity, forming carbon-sulfur bonds Gene Set

From GO Molecular Function Annotations

genes performing the ligase activity, forming carbon-sulfur bonds molecular function from the curated GO Molecular Function Annotations dataset.

arachidonate-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the arachidonate-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

aspartate-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the aspartate-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

threonine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the threonine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

cyclo-ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the cyclo-ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

glycine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the glycine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

pristanate-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the pristanate-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

butyrate-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the butyrate-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

biotin-protein ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the biotin-protein ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

phytanate-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the phytanate-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

isoleucine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the isoleucine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase activity, forming phosphoric ester bonds Gene Set

From GO Molecular Function Annotations

genes performing the ligase activity, forming phosphoric ester bonds molecular function from the curated GO Molecular Function Annotations dataset.

methionine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the methionine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

phenylalanine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the phenylalanine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

acyl-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the acyl-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

acetoacetate-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the acetoacetate-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ubiquitin-like protein ligase binding Gene Set

From GO Molecular Function Annotations

genes performing the ubiquitin-like protein ligase binding molecular function from the curated GO Molecular Function Annotations dataset.

biotin-[methylmalonyl-coa-carboxytransferase] ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the biotin-[methylmalonyl-coa-carboxytransferase] ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

alanine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the alanine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ammonia ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the ammonia ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

atg8 ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the atg8 ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

tubulin-glutamic acid ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the tubulin-glutamic acid ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

lysine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the lysine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

rna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the rna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

acetate-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the acetate-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

succinate-coa ligase (adp-forming) activity Gene Set

From GO Molecular Function Annotations

genes performing the succinate-coa ligase (adp-forming) activity molecular function from the curated GO Molecular Function Annotations dataset.

protein-glycine ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the protein-glycine ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

histidine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the histidine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ribosomal s6-glutamic acid ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the ribosomal s6-glutamic acid ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

leucine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the leucine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

protein-glutamic acid ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the protein-glutamic acid ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

glutamate-cysteine ligase catalytic subunit binding Gene Set

From GO Molecular Function Annotations

genes performing the glutamate-cysteine ligase catalytic subunit binding molecular function from the curated GO Molecular Function Annotations dataset.

glutamate-cysteine ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the glutamate-cysteine ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

phosphopantothenate--cysteine ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the phosphopantothenate--cysteine ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ubiquitin-ubiquitin ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the ubiquitin-ubiquitin ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

diphthine-ammonia ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the diphthine-ammonia ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

sumo ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the sumo ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

coa-ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the coa-ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

cholate-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the cholate-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

very long-chain fatty acid-coa ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the very long-chain fatty acid-coa ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

citrate-l-glutamate ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the citrate-l-glutamate ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

serine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the serine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase activity, forming carbon-oxygen bonds Gene Set

From GO Molecular Function Annotations

genes performing the ligase activity, forming carbon-oxygen bonds molecular function from the curated GO Molecular Function Annotations dataset.

cysteine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the cysteine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

lipoate-protein ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the lipoate-protein ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

formate-tetrahydrofolate ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the formate-tetrahydrofolate ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

tyrosine-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the tyrosine-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

n-acetyl-l-aspartate-l-glutamate ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the n-acetyl-l-aspartate-l-glutamate ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase activity, forming carbon-nitrogen bonds Gene Set

From GO Molecular Function Annotations

genes performing the ligase activity, forming carbon-nitrogen bonds molecular function from the curated GO Molecular Function Annotations dataset.

proline-trna ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the proline-trna ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

ligase activity, forming aminoacyl-trna and related compounds Gene Set

From GO Molecular Function Annotations

genes performing the ligase activity, forming aminoacyl-trna and related compounds molecular function from the curated GO Molecular Function Annotations dataset.

ubiquitin-like protein ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the ubiquitin-like protein ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

acid-thiol ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the acid-thiol ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

phosphoribosylamine-glycine ligase activity Gene Set

From GO Molecular Function Annotations

genes performing the phosphoribosylamine-glycine ligase activity molecular function from the curated GO Molecular Function Annotations dataset.

Arginine-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Arginine-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ubiquitin ligase, Det1/DDB1-complexing Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ubiquitin ligase, Det1/DDB1-complexing protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin ligase, domain of unknown function DUF908 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin ligase, domain of unknown function DUF908 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Tyrosine-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Tyrosine-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Putative E3 ubiquitin-protein ligase, makorin-related Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Putative E3 ubiquitin-protein ligase, makorin-related protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin ligase EDD, ubiquitin-associated domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin ligase EDD, ubiquitin-associated domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 SUMO-protein ligase Nse2 (Mms21) Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 SUMO-protein ligase Nse2 (Mms21) protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Tubulin-tyrosine ligase/Tubulin polyglutamylase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Tubulin-tyrosine ligase/Tubulin polyglutamylase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Biotin/lipoate A/B protein ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Biotin/lipoate A/B protein ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Probable E3 ubiquitin-protein ligase makorin-2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Probable E3 ubiquitin-protein ligase makorin-2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ubiquitin-protein ligase E6-AP Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ubiquitin-protein ligase E6-AP protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Alanine-tRNA ligase, eukaryota/bacteria Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Alanine-tRNA ligase, eukaryota/bacteria protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Serine-tRNA ligase, type1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Serine-tRNA ligase, type1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Phosphoribosylformylglycinamidine cyclo-ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Phosphoribosylformylglycinamidine cyclo-ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Nup358/RanBP2 E3 ligase domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Nup358/RanBP2 E3 ligase domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Methionine-tRNA ligase, type 1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Methionine-tRNA ligase, type 1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

5-formyltetrahydrofolate cyclo-ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the 5-formyltetrahydrofolate cyclo-ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Tyrosine-tRNA ligase, bacterial-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Tyrosine-tRNA ligase, bacterial-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase parkin Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase parkin protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Proline-tRNA ligase, class IIa, archaeal-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Proline-tRNA ligase, class IIa, archaeal-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Mur ligase, C-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Mur ligase, C-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

ATP-citrate lyase/succinyl-CoA ligase, active site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the ATP-citrate lyase/succinyl-CoA ligase, active site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Asparagine-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Asparagine-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase RNF8 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase RNF8 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Alanine-tRNA ligase, class IIc, anti-codon-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Alanine-tRNA ligase, class IIc, anti-codon-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Histidine-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Histidine-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Biotin--acetyl-CoA-carboxylase ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Biotin--acetyl-CoA-carboxylase ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Glutamate-cysteine ligase catalytic subunit Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Glutamate-cysteine ligase catalytic subunit protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin ligase, BRE1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin ligase, BRE1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

ATP-citrate lyase/succinyl-CoA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the ATP-citrate lyase/succinyl-CoA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Proline-tRNA ligase, class IIa Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Proline-tRNA ligase, class IIa protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Succinyl-CoA ligase, alpha subunit Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Succinyl-CoA ligase, alpha subunit protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase Arkadia, N-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase Arkadia, N-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Lipoyltransferase/lipoate-protein ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Lipoyltransferase/lipoate-protein ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Tryptophan-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Tryptophan-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA ligase/cyclic nucleotide phosphodiesterase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA ligase/cyclic nucleotide phosphodiesterase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Formate-tetrahydrofolate ligase, FTHFS, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Formate-tetrahydrofolate ligase, FTHFS, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Lysine-tRNA ligase, class II Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Lysine-tRNA ligase, class II protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Mur ligase, central Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Mur ligase, central protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Cysteine-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Cysteine-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Isoleucine-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Isoleucine-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Valine-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Valine-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

tRNA-splicing ligase, RtcB Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the tRNA-splicing ligase, RtcB protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase, SMURF1 type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase, SMURF1 type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin ligase, domain of unknown function DUF913 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin ligase, domain of unknown function DUF913 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Formate-tetrahydrofolate ligase, FTHFS Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Formate-tetrahydrofolate ligase, FTHFS protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin ligase, UBR4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin ligase, UBR4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 SUMO-protein ligase PIAS1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 SUMO-protein ligase PIAS1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 SUMO-protein ligase PIAS2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 SUMO-protein ligase PIAS2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 SUMO-protein ligase PIAS3 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 SUMO-protein ligase PIAS3 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase SINA like Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase SINA like protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase RNF31 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase RNF31 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Cysteinyl-tRNA synthetase/mycothiol ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Cysteinyl-tRNA synthetase/mycothiol ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Proline-tRNA ligase, class II, C-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Proline-tRNA ligase, class II, C-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Threonine-tRNA ligase, class IIa Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Threonine-tRNA ligase, class IIa protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase Mdm2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase Mdm2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase FANCL Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase FANCL protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase Trim36 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase Trim36 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 ubiquitin-protein ligase Highwire/Pam/Rpm-1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 ubiquitin-protein ligase Highwire/Pam/Rpm-1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Mitochondrial ubiquitin ligase activator of NFKB 1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Mitochondrial ubiquitin ligase activator of NFKB 1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

5-formyltetrahydrofolate cyclo-ligase-like domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the 5-formyltetrahydrofolate cyclo-ligase-like domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

E3 UFM1-protein ligase 1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the E3 UFM1-protein ligase 1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Biotin protein ligase, C-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Biotin protein ligase, C-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Glutamate-tRNA ligase, bacterial/mitochondrial Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Glutamate-tRNA ligase, bacterial/mitochondrial protein domain from the InterPro Predicted Protein Domain Annotations dataset.

2-amino-3-ketobutyrate coenzyme A ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the 2-amino-3-ketobutyrate coenzyme A ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Isoleucine-tRNA ligase, type 2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Isoleucine-tRNA ligase, type 2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Isoleucine-tRNA ligase, type 1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Isoleucine-tRNA ligase, type 1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Leucine-tRNA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Leucine-tRNA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Alanine-tRNA ligase, class IIc Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Alanine-tRNA ligase, class IIc protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Acetate-CoA ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Acetate-CoA ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Tryptophan-tRNA ligase, bacterial-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Tryptophan-tRNA ligase, bacterial-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ubiquitin-protein ligase E3 MDM2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ubiquitin-protein ligase E3 MDM2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Tubulin--tyrosine ligase-like protein 12 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Tubulin--tyrosine ligase-like protein 12 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

AMP-dependent synthetase/ligase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the AMP-dependent synthetase/ligase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

tRNA-splicing ligase RtcB homologue, eukaryotic Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the tRNA-splicing ligase RtcB homologue, eukaryotic protein domain from the InterPro Predicted Protein Domain Annotations dataset.

ligase Gene Set

From Phosphosite Textmining Biological Term Annotations

proteins co-occuring with the biological term ligase in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.

Autodegradation of the E3 ubiquitin ligase COP1 Gene Set

From Reactome Pathways

proteins participating in the Autodegradation of the E3 ubiquitin ligase COP1 pathway from the Reactome Pathways dataset.

cdk regulation of dna replication Gene Set

From Biocarta Pathways

proteins participating in the cdk regulation of dna replication pathway from the Biocarta Pathways dataset.

cdc25 and chk1 regulatory pathway in response to dna damage Gene Set

From Biocarta Pathways

proteins participating in the cdc25 and chk1 regulatory pathway in response to dna damage pathway from the Biocarta Pathways dataset.

apoptotic dna-fragmentation and tissue homeostasis Gene Set

From Biocarta Pathways

proteins participating in the apoptotic dna-fragmentation and tissue homeostasis pathway from the Biocarta Pathways dataset.

apoptotic signaling in response to dna damage Gene Set

From Biocarta Pathways

proteins participating in the apoptotic signaling in response to dna damage pathway from the Biocarta Pathways dataset.

rb tumor suppressor/checkpoint signaling in response to dna damage Gene Set

From Biocarta Pathways

proteins participating in the rb tumor suppressor/checkpoint signaling in response to dna damage pathway from the Biocarta Pathways dataset.

cadmium induces dna synthesis and proliferation in macrophages Gene Set

From Biocarta Pathways

proteins participating in the cadmium induces dna synthesis and proliferation in macrophages pathway from the Biocarta Pathways dataset.

mechanisms of transcriptional repression by dna methylation Gene Set

From Biocarta Pathways

proteins participating in the mechanisms of transcriptional repression by dna methylation pathway from the Biocarta Pathways dataset.

Mitochondrial DNA depletion syndrome 9 (encephalomyopathic with methylmalonic aciduria) Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA depletion syndrome 9 (encephalomyopathic with methylmalonic aciduria) phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Mitochondrial DNA depletion syndrome 4B, MNGIE type Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA depletion syndrome 4B, MNGIE type phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Mitochondrial DNA depletion syndrome 2 Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA depletion syndrome 2 phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Infertility associated with multi-tailed spermatozoa and excessive DNA Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Infertility associated with multi-tailed spermatozoa and excessive DNA phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Mitochondrial DNA depletion syndrome 12 (cardiomyopathic type) Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA depletion syndrome 12 (cardiomyopathic type) phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Mitochondrial DNA depletion syndrome 5 (encephalomyopathic with or without methylmalonic aciduria) Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA depletion syndrome 5 (encephalomyopathic with or without methylmalonic aciduria) phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Mitochondrial DNA depletion syndrome 11 Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA depletion syndrome 11 phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Mitochondrial DNA depletion syndrome 13 (encephalomyopathic type) Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA depletion syndrome 13 (encephalomyopathic type) phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Mitochondrial DNA-depletion syndrome 3, hepatocerebral Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA-depletion syndrome 3, hepatocerebral phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Mitochondrial DNA depletion syndrome 7 (hepatocerebral type) Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Mitochondrial DNA depletion syndrome 7 (hepatocerebral type) phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 4 Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 4 phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 1 Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 1 phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 2 Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 2 phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

Autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 3 Gene Set

From ClinVar Gene-Phenotype Associations

genes associated with the Autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 3 phenotype from the curated ClinVar Gene-Phenotype Associations dataset.

dna repair complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna repair complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna topoisomerase complex (atp-hydrolyzing) Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna topoisomerase complex (atp-hydrolyzing) cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

alpha dna polymerase:primase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the alpha dna polymerase:primase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna packaging complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna packaging complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna recombinase mediator complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna recombinase mediator complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna helicase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna helicase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase ii, core complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase ii, core complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

gamma dna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the gamma dna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna replication factor a complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna replication factor a complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

delta dna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the delta dna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

protein-dna complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the protein-dna complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

epsilon dna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the epsilon dna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase i complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase i complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna replication factor c complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna replication factor c complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna polymerase processivity factor complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna polymerase processivity factor complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

zeta dna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the zeta dna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

nuclear dna-directed rna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the nuclear dna-directed rna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase iii complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase iii complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase ii, holoenzyme Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase ii, holoenzyme cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna bending complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna bending complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna polymerase iii complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna polymerase iii complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna-directed rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna repair complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna repair complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

alpha dna polymerase:primase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the alpha dna polymerase:primase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna viral genome Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna viral genome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna packaging complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna packaging complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna recombinase mediator complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna recombinase mediator complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna helicase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna helicase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

gamma dna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the gamma dna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna replication factor a complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna replication factor a complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

extrachromosomal circular dna Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the extrachromosomal circular dna cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

protein-dna complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the protein-dna complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

epsilon dna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the epsilon dna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna-dependent protein kinase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna-dependent protein kinase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna replication preinitiation complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna replication preinitiation complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna polymerase iii complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna polymerase iii complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

protein-dna-rna complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the protein-dna-rna complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna replication termination region Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna replication termination region cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna replication factor c complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna replication factor c complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna polymerase processivity factor complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna polymerase processivity factor complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna-directed rna polymerase v complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna-directed rna polymerase v complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

nuclear dna-directed rna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the nuclear dna-directed rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

extrachromosomal dna Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the extrachromosomal dna cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna-directed rna polymerase ii, holoenzyme Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna-directed rna polymerase ii, holoenzyme cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna bending complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna bending complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

PTIP-DNA damage response complex Gene Set

From CORUM Protein Complexes

proteins in the PTIP-DNA damage response complex protein complex from the CORUM Protein Complexes dataset.

GammaH2AFX-NDHII-Ku70-DNA complex Gene Set

From CORUM Protein Complexes

proteins in the GammaH2AFX-NDHII-Ku70-DNA complex protein complex from the CORUM Protein Complexes dataset.

PCNA-DNA polymerase delta complex Gene Set

From CORUM Protein Complexes

proteins in the PCNA-DNA polymerase delta complex protein complex from the CORUM Protein Complexes dataset.

PCNA-MutS-alpha-DNA initial complex Gene Set

From CORUM Protein Complexes

proteins in the PCNA-MutS-alpha-DNA initial complex protein complex from the CORUM Protein Complexes dataset.

BRCA1-BARD1-BACH1-DNA damage complex II Gene Set

From CORUM Protein Complexes

proteins in the BRCA1-BARD1-BACH1-DNA damage complex II protein complex from the CORUM Protein Complexes dataset.

OCT1-SOX2 DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the OCT1-SOX2 DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

CBF-DNA complex Gene Set

From CORUM Protein Complexes

proteins in the CBF-DNA complex protein complex from the CORUM Protein Complexes dataset.

DNA polymerase delta complex Gene Set

From CORUM Protein Complexes

proteins in the DNA polymerase delta complex protein complex from the CORUM Protein Complexes dataset.

DNA polymerase alpha-primase complex Gene Set

From CORUM Protein Complexes

proteins in the DNA polymerase alpha-primase complex protein complex from the CORUM Protein Complexes dataset.

Bcl-xL-p53-PUMA complex, DNA damage induced Gene Set

From CORUM Protein Complexes

proteins in the Bcl-xL-p53-PUMA complex, DNA damage induced protein complex from the CORUM Protein Complexes dataset.

DNA repair complex NEIL2-PNK-Pol(beta)-LigIII(alpha)-XRCC1 Gene Set

From CORUM Protein Complexes

proteins in the DNA repair complex NEIL2-PNK-Pol(beta)-LigIII(alpha)-XRCC1 protein complex from the CORUM Protein Complexes dataset.

DNA synthesome complex (15 subunits) Gene Set

From CORUM Protein Complexes

proteins in the DNA synthesome complex (15 subunits) protein complex from the CORUM Protein Complexes dataset.

DNA polymerase alpha Gene Set

From CORUM Protein Complexes

proteins in the DNA polymerase alpha protein complex from the CORUM Protein Complexes dataset.

TEAD2-YAP DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the TEAD2-YAP DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

PAX6-SOX2 DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the PAX6-SOX2 DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

RUNX1-CBF-beta-DNA complex Gene Set

From CORUM Protein Complexes

proteins in the RUNX1-CBF-beta-DNA complex protein complex from the CORUM Protein Complexes dataset.

NFAT-JUN-FOS DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the NFAT-JUN-FOS DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

5S-DNA-TFIIIA-TFIIIC2-TFIIIB subcomplex Gene Set

From CORUM Protein Complexes

proteins in the 5S-DNA-TFIIIA-TFIIIC2-TFIIIB subcomplex protein complex from the CORUM Protein Complexes dataset.

BRCA1-BARD1-BRCA2-DNA damage complex III Gene Set

From CORUM Protein Complexes

proteins in the BRCA1-BARD1-BRCA2-DNA damage complex III protein complex from the CORUM Protein Complexes dataset.

5S-DNA-TFIIIA-TFIIIC2 subcomplex Gene Set

From CORUM Protein Complexes

proteins in the 5S-DNA-TFIIIA-TFIIIC2 subcomplex protein complex from the CORUM Protein Complexes dataset.

ERG-JUN-FOS DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the ERG-JUN-FOS DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

Rag1-Rag2 protein-DNA complex Gene Set

From CORUM Protein Complexes

proteins in the Rag1-Rag2 protein-DNA complex protein complex from the CORUM Protein Complexes dataset.

DNA synthesome core complex Gene Set

From CORUM Protein Complexes

proteins in the DNA synthesome core complex protein complex from the CORUM Protein Complexes dataset.

TEAD1-YAP DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the TEAD1-YAP DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

DNA-PK-Ku complex Gene Set

From CORUM Protein Complexes

proteins in the DNA-PK-Ku complex protein complex from the CORUM Protein Complexes dataset.

TEAD4-YAP DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the TEAD4-YAP DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

Artemis-DNA-PK complex Gene Set

From CORUM Protein Complexes

proteins in the Artemis-DNA-PK complex protein complex from the CORUM Protein Complexes dataset.

AIF-CYPA-DNA complex Gene Set

From CORUM Protein Complexes

proteins in the AIF-CYPA-DNA complex protein complex from the CORUM Protein Complexes dataset.

OCT1-OBF1-DNA-TLE1 complex Gene Set

From CORUM Protein Complexes

proteins in the OCT1-OBF1-DNA-TLE1 complex protein complex from the CORUM Protein Complexes dataset.

DNA synthesome complex (13 subunits) Gene Set

From CORUM Protein Complexes

proteins in the DNA synthesome complex (13 subunits) protein complex from the CORUM Protein Complexes dataset.

DNA-PK-Ku-eIF2-NF90-NF45 complex Gene Set

From CORUM Protein Complexes

proteins in the DNA-PK-Ku-eIF2-NF90-NF45 complex protein complex from the CORUM Protein Complexes dataset.

DNA-PK-Ku antigen complex Gene Set

From CORUM Protein Complexes

proteins in the DNA-PK-Ku antigen complex protein complex from the CORUM Protein Complexes dataset.

DNA double-strand break end-joining complex Gene Set

From CORUM Protein Complexes

proteins in the DNA double-strand break end-joining complex protein complex from the CORUM Protein Complexes dataset.

OCT4-SOX2 DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the OCT4-SOX2 DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

PCNA-MutS-alpha-MutL-alpha-DNA complex Gene Set

From CORUM Protein Complexes

proteins in the PCNA-MutS-alpha-MutL-alpha-DNA complex protein complex from the CORUM Protein Complexes dataset.

TEAD3-YAP DNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the TEAD3-YAP DNA-protein complex protein complex from the CORUM Protein Complexes dataset.

BRCA1-BARD1-BACH1-DNA damage complex I Gene Set

From CORUM Protein Complexes

proteins in the BRCA1-BARD1-BACH1-DNA damage complex I protein complex from the CORUM Protein Complexes dataset.

Vigilin-DNA-PK-Ku antigen complex Gene Set

From CORUM Protein Complexes

proteins in the Vigilin-DNA-PK-Ku antigen complex protein complex from the CORUM Protein Complexes dataset.

SMAD3-SMAD4-CTCF protein-DNA complex Gene Set

From CORUM Protein Complexes

proteins in the SMAD3-SMAD4-CTCF protein-DNA complex protein complex from the CORUM Protein Complexes dataset.

DHX9-ADAR-vigilin-DNA-PK-Ku antigen complex Gene Set

From CORUM Protein Complexes

proteins in the DHX9-ADAR-vigilin-DNA-PK-Ku antigen complex protein complex from the CORUM Protein Complexes dataset.

OCT1-OBF1-DNA complex Gene Set

From CORUM Protein Complexes

proteins in the OCT1-OBF1-DNA complex protein complex from the CORUM Protein Complexes dataset.

NCOA6-DNA-PK-Ku-PARP1 complex Gene Set

From CORUM Pro