COMPARTMENTS Resource

Description COMPARTMENTS is a database of protein subcellular localization evidence, using evidence collected by integrating experimental datasets, by integrating sequence-based predictions, by manual literature curation, or by automated textmining. Subcellular structure/compartment terms were mapped to the Cellular Component subset of the Gene Ontology. Data from disparate sources were standardized by assigning confidence scores for all protein-compartment associations.
Citation(s)
External Link http://compartments.jensenlab.org/Search

Datasets

Dataset Description Category Attribute Views
Curated Protein Localization Evidence Scores protein subcellular localization evidence scores by manual literature curation structural or functional annotations cellular component 491
Experimental Protein Localization Evidence Scores protein subcellular localization evidence scores by integrating experimental data proteomics cellular component 281
Text-mining Protein Localization Evidence Scores gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts structural or functional annotations cellular component 517