viral nucleocapsid Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle. (Gene Ontology, GO_0019013)
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Genes

250 proteins co-occuring with the viral nucleocapsid cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
MMP11 matrix metallopeptidase 11 1.56959
CDSN corneodesmosin 1.50904
CWC15 CWC15 spliceosome-associated protein 1.45194
ERVW-1 endogenous retrovirus group W, member 1 1.44686
ERF Ets2 repressor factor 1.43444
NUPR1 nuclear protein, transcriptional regulator, 1 1.39796
APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G 1.35649
HBE1 hemoglobin, epsilon 1 1.31412
MX1 MX dynamin-like GTPase 1 1.28036
STRBP spermatid perinuclear RNA binding protein 1.27027
CD4 CD4 molecule 1.1726
SH2D3C SH2 domain containing 3C 1.17209
CDA cytidine deaminase 1.15723
GP5 glycoprotein V (platelet) 1.12092
GRN granulin 1.10103
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 1.04481
GP2 glycoprotein 2 (zymogen granule membrane) 1.03779
SOS1 son of sevenless homolog 1 (Drosophila) 1.03529
FGL2 fibrinogen-like 2 1.03428
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 1.02729
SH2D3A SH2 domain containing 3A 1.0238
ZNF274 zinc finger protein 274 0.982932
MMP10 matrix metallopeptidase 10 0.955917
KRAS Kirsten rat sarcoma viral oncogene homolog 0.954961
IRF3 interferon regulatory factor 3 0.914376
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.90321
SP6 Sp6 transcription factor 0.884244
DUT deoxyuridine triphosphatase 0.849287
GSTA3 glutathione S-transferase alpha 3 0.846532
RNASEH2A ribonuclease H2, subunit A 0.845614
GSTA2 glutathione S-transferase alpha 2 0.844696
GSTA4 glutathione S-transferase alpha 4 0.844237
GSTA1 glutathione S-transferase alpha 1 0.841941
HLA-A major histocompatibility complex, class I, A 0.835515
PDGFB platelet-derived growth factor beta polypeptide 0.82863
TSG101 tumor susceptibility 101 0.82037
GYPC glycophorin C (Gerbich blood group) 0.778669
CDK5RAP1 CDK5 regulatory subunit associated protein 1 0.778212
ZNF17 zinc finger protein 17 0.774558
DBT dihydrolipoamide branched chain transacylase E2 0.76726
TRIM6 tripartite motif containing 6 0.75181
PRMT6 protein arginine methyltransferase 6 0.740515
IFNA1 interferon, alpha 1 0.723026
PIF1 PIF1 5'-to-3' DNA helicase 0.71857
PRNT prion protein (testis specific) 0.717236
IGHV3-30 immunoglobulin heavy variable 3-30 0.711465
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.702626
MDFI MyoD family inhibitor 0.686827
CD79A CD79a molecule, immunoglobulin-associated alpha 0.684644
TMEM140 transmembrane protein 140 0.676368
BZW1 basic leucine zipper and W2 domains 1 0.67246
HLA-DOB major histocompatibility complex, class II, DO beta 0.650869
CD46 CD46 molecule, complement regulatory protein 0.648721
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 0.644429
HLA-B major histocompatibility complex, class I, B 0.639289
ZNF80 zinc finger protein 80 0.636295
IGHV3-9 immunoglobulin heavy variable 3-9 0.635868
LTB lymphotoxin beta (TNF superfamily, member 3) 0.633305
PUS3 pseudouridylate synthase 3 0.632024
DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 0.626483
ACKR1 atypical chemokine receptor 1 (Duffy blood group) 0.622654
DNAJC28 DnaJ (Hsp40) homolog, subfamily C, member 28 0.616285
IL17C interleukin 17C 0.598538
OTOS otospiralin 0.595173
NBAS neuroblastoma amplified sequence 0.588456
CENPV centromere protein V 0.583012
TMBIM4 transmembrane BAX inhibitor motif containing 4 0.575495
APOBEC3H apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H 0.574662
TRIM34 tripartite motif containing 34 0.569248
TRIM6-TRIM34 TRIM6-TRIM34 readthrough 0.569248
RAF1 Raf-1 proto-oncogene, serine/threonine kinase 0.564677
NXT1 nuclear transport factor 2-like export factor 1 0.564262
MOV10 Mov10 RISC complex RNA helicase 0.552251
GLB1 galactosidase, beta 1 0.548535
FAM155B family with sequence similarity 155, member B 0.54606
PODXL podocalyxin-like 0.543176
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 0.536594
TSPO translocator protein (18kDa) 0.535361
CYP4F2 cytochrome P450, family 4, subfamily F, polypeptide 2 0.525113
NPVF neuropeptide VF precursor 0.523476
PRNP prion protein 0.513677
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.512047
CDKN2B cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) 0.51164
ACE2 angiotensin I converting enzyme 2 0.503099
ZCRB1 zinc finger CCHC-type and RNA binding motif 1 0.502288
TAT tyrosine aminotransferase 0.49499
CNBP CCHC-type zinc finger, nucleic acid binding protein 0.492561
PBRM1 polybromo 1 0.488519
TRIM10 tripartite motif containing 10 0.481258
IRF7 interferon regulatory factor 7 0.480855
CTRL chymotrypsin-like 0.48005
TRIM26 tripartite motif containing 26 0.475625
TRIM15 tripartite motif containing 15 0.464798
KARS lysyl-tRNA synthetase 0.458006
ARHGAP17 Rho GTPase activating protein 17 0.455613
KCNAB2 potassium channel, voltage gated subfamily A regulatory beta subunit 2 0.455214
PATE1 prostate and testis expressed 1 0.454418
LMAN1 lectin, mannose-binding, 1 0.447259
CSPG5 chondroitin sulfate proteoglycan 5 (neuroglycan C) 0.444085
PDZD8 PDZ domain containing 8 0.439333
ZFP36 ZFP36 ring finger protein 0.438542
PDE6D phosphodiesterase 6D, cGMP-specific, rod, delta 0.43617
MIR98 microRNA 98 0.430647
MPLKIP M-phase specific PLK1 interacting protein 0.430253
LATS1 large tumor suppressor kinase 1 0.429072
FAM120B family with sequence similarity 120B 0.428678
VPS4A vacuolar protein sorting 4 homolog A (S. cerevisiae) 0.42082
PRAMEF20 PRAME family member 20 0.410649
TCF3 transcription factor 3 0.404415
FBXO17 F-box protein 17 0.391228
PGA3 pepsinogen 3, group I (pepsinogen A) 0.386979
PGA4 pepsinogen 4, group I (pepsinogen A) 0.386979
DAXX death-domain associated protein 0.381199
NPTN neuroplastin 0.375818
ANO7P1 anoctamin 7 pseudogene 1 0.372749
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 0.371599
CPM carboxypeptidase M 0.370833
CREBZF CREB/ATF bZIP transcription factor 0.370067
IFNB1 interferon, beta 1, fibroblast 0.364331
SLC25A20 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 0.357086
XPO1 exportin 1 0.353662
NPRL2 nitrogen permease regulator-like 2 (S. cerevisiae) 0.352901
ATF7 activating transcription factor 7 0.349484
C14ORF166 chromosome 14 open reading frame 166 0.348346
IL2 interleukin 2 0.347967
FRY furry homolog (Drosophila) 0.347967
ISG20 interferon stimulated exonuclease gene 20kDa 0.347208
CHMP4A charged multivesicular body protein 4A 0.344935
NOL6 nucleolar protein 6 (RNA-associated) 0.343421
S100A10 S100 calcium binding protein A10 0.340773
BTNL2 butyrophilin-like 2 0.340773
NCL nucleolin 0.334733
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 0.334733
ZNF185 zinc finger protein 185 (LIM domain) 0.333225
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 0.331719
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.325702
UHRF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase 0.323825
PARG poly (ADP-ribose) glycohydrolase 0.3227
MAPK1 mitogen-activated protein kinase 1 0.32195
PMEL premelanosome protein 0.31783
TOP1 topoisomerase (DNA) I 0.315212
KIF1B kinesin family member 1B 0.309613
SNX16 sorting nexin 16 0.306632
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 0.30626
SRI sorcin 0.303283
HM13 histocompatibility (minor) 13 0.29994
POLN polymerase (DNA directed) nu 0.298826
ZNF763 zinc finger protein 763 0.298455
ZNF501 zinc finger protein 501 0.298455
ZNF629 zinc finger protein 629 0.298455
ZNF569 zinc finger protein 569 0.298455
ZNF44 zinc finger protein 44 0.296601
ZNF350 zinc finger protein 350 0.29623
SLC25A19 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 0.294007
TMEM51 transmembrane protein 51 0.292897
SRP19 signal recognition particle 19kDa 0.292527
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.291787
BCL6B B-cell CLL/lymphoma 6, member B 0.291417
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.288091
GRSF1 G-rich RNA sequence binding factor 1 0.284769
CYP4F3 cytochrome P450, family 4, subfamily F, polypeptide 3 0.282189
PSME3 proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 0.277406
ZNF436 zinc finger protein 436 0.276671
NVL nuclear VCP-like 0.276304
HSPA4 heat shock 70kDa protein 4 0.2708
PXK PX domain containing serine/threonine kinase 0.2708
MYH10 myosin, heavy chain 10, non-muscle 0.270068
YIPF2 Yip1 domain family, member 2 0.268969
ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B 0.266408
SQSTM1 sequestosome 1 0.26166
PAIP1 poly(A) binding protein interacting protein 1 0.257289
YIPF1 Yip1 domain family, member 1 0.256561
KLRC3 killer cell lectin-like receptor subfamily C, member 3 0.255107
HNF1A HNF1 homeobox A 0.254017
IFNG interferon, gamma 0.253291
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.252927
F12 coagulation factor XII (Hageman factor) 0.251839
IFNAR1 interferon (alpha, beta and omega) receptor 1 0.250751
ALPPL2 alkaline phosphatase, placental-like 2 0.250389
RPS19 ribosomal protein S19 0.250026
ALPL alkaline phosphatase, liver/bone/kidney 0.250026
ALPP alkaline phosphatase, placental 0.249664
DERA deoxyribose-phosphate aldolase (putative) 0.248216
LUZP6 leucine zipper protein 6 0.24713
REXO1L1P REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene 0.246769
TNF tumor necrosis factor 0.244601
NELFCD negative elongation factor complex member C/D 0.244601
SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 0.242437
ACOT13 acyl-CoA thioesterase 13 0.240636
PPP1CA protein phosphatase 1, catalytic subunit, alpha isozyme 0.238478
DCTN2 dynactin 2 (p50) 0.23776
WHSC1 Wolf-Hirschhorn syndrome candidate 1 0.234174
JAG2 jagged 2 0.232744
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.231672
RNASE2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) 0.224204
FOXM1 forkhead box M1 0.222083
ACSL1 acyl-CoA synthetase long-chain family member 1 0.22173
TDP2 tyrosyl-DNA phosphodiesterase 2 0.219969
WIBG within bgcn homolog (Drosophila) 0.218563
SPRED1 sprouty-related, EVH1 domain containing 1 0.21716
PID1 phosphotyrosine interaction domain containing 1 0.214714
LEP leptin 0.214366
TRIM5 tripartite motif containing 5 0.214017
PABPC1 poly(A) binding protein, cytoplasmic 1 0.211933
REV3L REV3-like, polymerase (DNA directed), zeta, catalytic subunit 0.211587
PNISR PNN-interacting serine/arginine-rich protein 0.209513
TGM5 transglutaminase 5 0.209169
RXRA retinoid X receptor, alpha 0.208137
RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 0.205059
LPO lactoperoxidase 0.204718
PAIP2 poly(A) binding protein interacting protein 2 0.203361
UTS2R urotensin 2 receptor 0.200328
RHOBTB2 Rho-related BTB domain containing 2 0.199659
CPSF3L cleavage and polyadenylation specific factor 3-like 0.196669
ARHGEF16 Rho guanine nucleotide exchange factor (GEF) 16 0.196669
CREB3 cAMP responsive element binding protein 3 0.194698
SERPINA5 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 0.194371
RPL13A ribosomal protein L13a 0.19307
NR5A2 nuclear receptor subfamily 5, group A, member 2 0.192423
LGALS13 lectin, galactoside-binding, soluble, 13 0.191777
EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 0.190814
SLC10A3 solute carrier family 10, member 3 0.190814
NMUR2 neuromedin U receptor 2 0.188905
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 0.188274
ERV3-1 endogenous retrovirus group 3, member 1 0.183631
STAT1 signal transducer and activator of transcription 1, 91kDa 0.179167
SAG S-antigen; retina and pineal gland (arrestin) 0.178299
LMLN leishmanolysin-like (metallopeptidase M8 family) 0.177439
PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 0.175466
CTNNBL1 catenin, beta like 1 0.174911
NANP N-acetylneuraminic acid phosphatase 0.174635
PRB3 proline-rich protein BstNI subfamily 3 0.173814
RRM1 ribonucleotide reductase M1 0.173003
CXCR4 chemokine (C-X-C motif) receptor 4 0.171149
ISG15 ISG15 ubiquitin-like modifier 0.168598
PROS1 protein S (alpha) 0.165697
STAU1 staufen double-stranded RNA binding protein 1 0.16477
SRSF9 serine/arginine-rich splicing factor 9 0.162546
CRYGD crystallin, gamma D 0.16233
RBM4 RNA binding motif protein 4 0.16233
MUT methylmalonyl CoA mutase 0.161693
CARD17 caspase recruitment domain family, member 17 0.160456
ANGPTL6 angiopoietin-like 6 0.159658
SLU7 SLU7 splicing factor homolog (S. cerevisiae) 0.159268
PPM1A protein phosphatase, Mg2+/Mn2+ dependent, 1A 0.159074
GGN gametogenetin 0.158502
LMBRD1 LMBR1 domain containing 1 0.158129
RNASEL ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) 0.158129
NCF1C neutrophil cytosolic factor 1C pseudogene 0.157397
MIR223 microRNA 223 0.156342