viral factory Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description An intracellular compartment in a host cell which increases the efficiency of viral replication and/or assembly, and shields the virus from host defenses. Viral factories can be either cytoplasmic or nuclear and often arise from extensive rearrangement of host cell cytoskeletal and/or cell membrane compartments. (Gene Ontology, GO_0039713)
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56 proteins co-occuring with the viral factory cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ARPP21 cAMP-regulated phosphoprotein, 21kDa 1.06549
ZNF350 zinc finger protein 350 0.904138
PML promyelocytic leukemia 0.873186
SP100 SP100 nuclear antigen 0.852042
ATRIP ATR interacting protein 0.759069
COLQ collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 0.746381
OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 0.691202
RAD50 RAD50 homolog (S. cerevisiae) 0.689888
TNKS2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 0.65388
HSPA8 heat shock 70kDa protein 8 0.65345
RPA2 replication protein A2, 32kDa 0.630318
PGM3 phosphoglucomutase 3 0.622229
CCND3 cyclin D3 0.616709
MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 0.598538
ATM ATM serine/threonine kinase 0.591812
SIX3 SIX homeobox 3 0.535772
NADK NAD kinase 0.523885
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.517348
DDB2 damage-specific DNA binding protein 2, 48kDa 0.48287
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 0.476429
MSH3 mutS homolog 3 0.448451
MSH2 mutS homolog 2 0.444482
WASH7P WAS protein family homolog 7 pseudogene 0.427497
WASH6P WAS protein family homolog 6 pseudogene 0.42396
WASH1 WAS protein family homolog 1 0.421604
RCOR1 REST corepressor 1 0.41182
PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 0.367771
NCL nucleolin 0.365477
OSBP oxysterol binding protein 0.349484
RAD9A RAD9 homolog A (S. pombe) 0.347208
C1QBP complement component 1, q subcomponent binding protein 0.340395
PIP prolactin-induced protein 0.332472
CDK4 cyclin-dependent kinase 4 0.330966
DDB1 damage-specific DNA binding protein 1, 127kDa 0.325327
HEXIM1 hexamethylene bis-acetamide inducible 1 0.309613
RAD51 RAD51 recombinase 0.294007
GSTA3 glutathione S-transferase alpha 3 0.286983
GSTA2 glutathione S-transferase alpha 2 0.285138
GSTA4 glutathione S-transferase alpha 4 0.285138
GSTA1 glutathione S-transferase alpha 1 0.282926
UNG uracil-DNA glycosylase 0.274835
LMNA lamin A/C 0.274101
KDM1A lysine (K)-specific demethylase 1A 0.258016
RFC1 replication factor C (activator 1) 1, 145kDa 0.253291
TP53 tumor protein p53 0.246407
MSH6 mutS homolog 6 0.243879
MX1 MX dynamin-like GTPase 1 0.242437
CDT1 chromatin licensing and DNA replication factor 1 0.240636
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 0.235607
CDK6 cyclin-dependent kinase 6 0.228108
ACKR1 atypical chemokine receptor 1 (Duffy blood group) 0.205059
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.194371
PARK2 parkin RBR E3 ubiquitin protein ligase 0.19307
DAXX death-domain associated protein 0.181823
RAD52 RAD52 homolog (S. cerevisiae) 0.177154
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 0.168847