ventral midbrain Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
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Genes

162 proteins co-occuring with the tissue ventral midbrain in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
TH tyrosine hydroxylase 2.16602
LMX1A LIM homeobox transcription factor 1, alpha 1.84967
NR4A2 nuclear receptor subfamily 4, group A, member 2 1.70495
PITX3 paired-like homeodomain 3 1.62058
SHH sonic hedgehog 1.60763
OTX2 orthodenticle homeobox 2 1.36405
GDNF glial cell derived neurotrophic factor 1.35359
LMX1B LIM homeobox transcription factor 1, beta 1.32235
EN1 engrailed homeobox 1 1.31694
NKX2-2 NK2 homeobox 2 1.29355
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2 1.28547
WNT1 wingless-type MMTV integration site family, member 1 1.26799
FGF8 fibroblast growth factor 8 (androgen-induced) 1.25056
NTS neurotensin 1.23227
FOXA2 forkhead box A2 1.18113
TTC12 tetratricopeptide repeat domain 12 1.14875
WNT5A wingless-type MMTV integration site family, member 5A 1.13058
HCFC2 host cell factor C2 1.07971
NKX6-1 NK6 homeobox 1 1.01725
DTNA dystrobrevin, alpha 1.01462
RGS10 regulator of G-protein signaling 10 0.96636
POU4F1 POU class 4 homeobox 1 0.964631
SNCB synuclein, beta 0.937917
BTBD9 BTB (POZ) domain containing 9 0.885438
NEUROG2 neurogenin 2 0.858416
LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) 0.848325
DVL3 dishevelled segment polarity protein 3 0.83951
BDNF brain-derived neurotrophic factor 0.832385
GLI1 GLI family zinc finger 1 0.824849
NKX2-8 NK2 homeobox 8 0.805213
PSPN persephin 0.788964
RYK receptor-like tyrosine kinase 0.783141
FGF2 fibroblast growth factor 2 (basic) 0.780648
NPAS1 neuronal PAS domain protein 1 0.77774
DZIP1 DAZ interacting zinc finger protein 1 0.774834
GCHFR GTP cyclohydrolase I feedback regulator 0.7711
LOC102724852 uncharacterized LOC102724852 0.755777
PLB1 phospholipase B1 0.735147
FOXA1 forkhead box A1 0.725685
WNT3A wingless-type MMTV integration site family, member 3A 0.720345
LHB luteinizing hormone beta polypeptide 0.718703
NRTN neurturin 0.690042
NTF3 neurotrophin 3 0.689226
SV2C synaptic vesicle glycoprotein 2C 0.681064
DRD2 dopamine receptor D2 0.646505
HELT helt bHLH transcription factor 0.640023
GFRA1 GDNF family receptor alpha 1 0.638404
MOBP myelin-associated oligodendrocyte basic protein 0.635572
LMO3 LIM domain only 3 (rhombotin-like 2) 0.633144
PRKCE protein kinase C, epsilon 0.6182
NTN1 netrin 1 0.61578
ERBB4 erb-b2 receptor tyrosine kinase 4 0.600077
MSX1 msh homeobox 1 0.59646
FOXN4 forkhead box N4 0.578816
EN2 engrailed homeobox 2 0.578416
KLF7 Kruppel-like factor 7 (ubiquitous) 0.578016
DBX1 developing brain homeobox 1 0.575616
DTNB dystrobrevin, beta 0.575216
NES nestin 0.561644
EMX2 empty spiracles homeobox 2 0.559652
RAB40AL RAB40A, member RAS oncogene family-like 0.54217
PARK2 parkin RBR E3 ubiquitin protein ligase 0.54217
SIX3 SIX homeobox 3 0.529903
LYPLA1 lysophospholipase I 0.520829
ZFP42 ZFP42 zinc finger protein 0.520829
NELL2 NEL-like 2 (chicken) 0.518465
ASCL1 achaete-scute family bHLH transcription factor 1 0.518465
NRG3 neuregulin 3 0.507064
FZD1 frizzled class receptor 1 0.501965
NRG1 neuregulin 1 0.485545
TFIP11 tuftelin interacting protein 11 0.484766
PTCH1 patched 1 0.484376
ISL1 ISL LIM homeobox 1 0.482817
SLC9A2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 0.478534
SLC9A9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 0.477756
FGFR2 fibroblast growth factor receptor 2 0.477367
YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta 0.475034
MAP3K13 mitogen-activated protein kinase kinase kinase 13 0.468824
CNR1 cannabinoid receptor 1 (brain) 0.464174
FGFR1 fibroblast growth factor receptor 1 0.459532
SUFU suppressor of fused homolog (Drosophila) 0.458373
GRM3 glutamate receptor, metabotropic 3 0.458373
GDF7 growth differentiation factor 7 0.451042
FZD8 frizzled class receptor 8 0.442194
WNT8B wingless-type MMTV integration site family, member 8B 0.437205
CARTPT CART prepropeptide 0.432991
SCN1B sodium channel, voltage gated, type I beta subunit 0.429165
SLC9A5 solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 0.428783
SLC9A6 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 0.426872
LHX9 LIM homeobox 9 0.42191
LRIG1 leucine-rich repeats and immunoglobulin-like domains 1 0.420004
CCK cholecystokinin 0.410491
GLI2 GLI family zinc finger 2 0.408972
CYTL1 cytokine-like 1 0.405555
ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 0.40366
HHIP hedgehog interacting protein 0.401386
GRM1 glutamate receptor, metabotropic 1 0.398357
ANKK1 ankyrin repeat and kinase domain containing 1 0.389666
BCAT2 branched chain amino-acid transaminase 2, mitochondrial 0.389289
PHOX2A paired-like homeobox 2a 0.388912
TGFB3 transforming growth factor, beta 3 0.38552
SIM2 single-minded family bHLH transcription factor 2 0.38439
NDUFB11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa 0.383637
MANF mesencephalic astrocyte-derived neurotrophic factor 0.383637
LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 0.375743
PTCH2 patched 2 0.373868
SMO smoothened, frizzled class receptor 0.372743
EFNB3 ephrin-B3 0.37087
EPHB1 EPH receptor B1 0.354455
RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 0.345558
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 0.342602
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 0.340019
CALB1 calbindin 1, 28kDa 0.340019
MAP3K12 mitogen-activated protein kinase kinase kinase 12 0.3356
DVL2 dishevelled segment polarity protein 2 0.332661
GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 0.329361
SOX2 SRY (sex determining region Y)-box 2 0.322414
GLB1 galactosidase, beta 1 0.320227
ZIC1 Zic family member 1 0.319863
KCNJ4 potassium channel, inwardly rectifying subfamily J, member 4 0.315135
CHAT choline O-acetyltransferase 0.314409
GBX2 gastrulation brain homeobox 2 0.307167
OTX1 orthodenticle homeobox 1 0.301398
GDF5 growth differentiation factor 5 0.301398
PGAM2 phosphoglycerate mutase 2 (muscle) 0.296013
DKK1 dickkopf WNT signaling pathway inhibitor 1 0.291365
SATB2 SATB homeobox 2 0.291365
OPRM1 opioid receptor, mu 1 0.290652
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 0.284962
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 0.284253
ARTN artemin 0.284253
SLC9A1 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 0.283191
OTP orthopedia homeobox 0.28107
GDA guanine deaminase 0.277197
FGFR3 fibroblast growth factor receptor 3 0.276846
E2F3 E2F transcription factor 3 0.275094
PGAM1 phosphoglycerate mutase 1 (brain) 0.274394
POU4F2 POU class 4 homeobox 2 0.269867
NCAM1 neural cell adhesion molecule 1 0.269867
BPGM 2,3-bisphosphoglycerate mutase 0.267446
FOXP2 forkhead box P2 0.267446
ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 0.267102
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 0.265381
BOC BOC cell adhesion associated, oncogene regulated 0.263669
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 0.262645
SLC9A3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 0.25858
LHX2 LIM homeobox 2 0.257237
WNT7A wingless-type MMTV integration site family, member 7A 0.243294
CXCL6 chemokine (C-X-C motif) ligand 6 0.242672
TIAM1 T-cell lymphoma invasion and metastasis 1 0.242054
B4GALT6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 0.239307
IGKV1-17 immunoglobulin kappa variable 1-17 0.239307
KCNN3 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 3 0.233162
CPEB1 cytoplasmic polyadenylation element binding protein 1 0.232599
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.229032
PPIF peptidylprolyl isomerase F 0.22415
DVL1 dishevelled segment polarity protein 1 0.223906
SNCA synuclein, alpha (non A4 component of amyloid precursor) 0.221061
WNT10B wingless-type MMTV integration site family, member 10B 0.21673
KCNJ12 potassium channel, inwardly rectifying subfamily J, member 12 0.21673
SOX3 SRY (sex determining region Y)-box 3 0.21573
WNT2 wingless-type MMTV integration site family member 2 0.214576