vascular calcification Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description Abnormal calcification of the vasculature. (Human Phenotype Ontology, HP_0004934)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0004934
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Genes

57 genes associated with the vascular calcification phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
CDKN2B-AS1 CDKN2B antisense RNA 1 2.0532
PPAP2B phosphatidic acid phosphatase type 2B 1.9164
ZC3HC1 zinc finger, C3HC-type containing 1 1.85904
TCF21 transcription factor 21 1.56278
ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 1.56278
LPA lipoprotein, Lp(a) 1.47083
HHIPL1 HHIP-like 1 1.43434
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1.35619
CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 1.35415
WDR12 WD repeat domain 12 1.35113
PHACTR1 phosphatase and actin regulator 1 1.35018
SMG6 SMG6 nonsense mediated mRNA decay factor 1.35018
COL4A2 collagen, type IV, alpha 2 1.29582
MIA3 melanoma inhibitory activity family, member 3 1.23465
ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 1.23465
UBE2Z ubiquitin-conjugating enzyme E2Z 1.22311
MRAS muscle RAS oncogene homolog 1.19472
OPTC opticin 0.935362
PCSK5 proprotein convertase subtilisin/kexin type 5 0.923916
POTEA POTE ankyrin domain family, member A 0.903602
SH2B3 SH2B adaptor protein 3 0.89381
SUFU suppressor of fused homolog (Drosophila) 0.876787
SPRR2B small proline-rich protein 2B 0.85426
ACTR1A ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 0.7965
DUSP27 dual specificity phosphatase 27 (putative) 0.778318
GRID2 glutamate receptor, ionotropic, delta 2 0.772842
TRIB2 tribbles pseudokinase 2 0.757258
TMEM180 transmembrane protein 180 0.752335
UNC5B unc-5 homolog B (C. elegans) 0.730213
ANKRD36B ankyrin repeat domain 36B 0.726078
PDK4 pyruvate dehydrogenase kinase, isozyme 4 0.703894
ASIC2 acid sensing (proton gated) ion channel 2 0.700393
ILDR2 immunoglobulin-like domain containing receptor 2 0.693745
FOXN3 forkhead box N3 0.690584
SLC2A14 solute carrier family 2 (facilitated glucose transporter), member 14 0.678743
SPRR2D small proline-rich protein 2D 0.669923
SPRR1B small proline-rich protein 1B 0.659244
HGSNAT heparan-alpha-glucosaminide N-acetyltransferase 0.654304
CDH13 cadherin 13 0.651923
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.651923
HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 0.649599
UBE2K ubiquitin-conjugating enzyme E2K 0.644641
ADGRD1 adhesion G protein-coupled receptor D1 0.639858
ERBB4 erb-b2 receptor tyrosine kinase 4 0.628781
MB myoglobin 0.626701
BMPR1B bone morphogenetic protein receptor, type IB 0.618783
HOOK3 hook microtubule-tethering protein 3 0.616892
ARHGAP24 Rho GTPase activating protein 24 0.616892
SLIT1 slit homolog 1 (Drosophila) 0.602436
AGXT alanine-glyoxylate aminotransferase 0.597506
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 0.597506
SMOC1 SPARC related modular calcium binding 1 0.597506
E2F1 E2F transcription factor 1 0.588321
C2ORF54 chromosome 2 open reading frame 54 0.57836
PPARD peroxisome proliferator-activated receptor delta 0.577224
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 0.576102
FHIT fragile histidine triad 0.573902