transcriptionally Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

344 genes co-occuring with the biological term transcriptionally in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)
ACAT2 acetyl-CoA acetyltransferase 2
ACTL6A actin-like 6A
AFF3 AF4/FMR2 family, member 3
AGO1 argonaute RISC catalytic component 1
AHR aryl hydrocarbon receptor
AIRE autoimmune regulator
AKT1 v-akt murine thymoma viral oncogene homolog 1
AKT2 v-akt murine thymoma viral oncogene homolog 2
ALDH4A1 aldehyde dehydrogenase 4 family, member A1
APBA3 amyloid beta (A4) precursor protein-binding, family A, member 3
APLP1 amyloid beta (A4) precursor-like protein 1
AQP1 aquaporin 1 (Colton blood group)
AQP3 aquaporin 3 (Gill blood group)
AR androgen receptor
ARHGAP12 Rho GTPase activating protein 12
ARHGEF25 Rho guanine nucleotide exchange factor (GEF) 25
ARMCX1 armadillo repeat containing, X-linked 1
ARNT aryl hydrocarbon receptor nuclear translocator
ATF4 activating transcription factor 4
ATG7 autophagy related 7
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2
BCL2L11 BCL2-like 11 (apoptosis facilitator)
BCL6 B-cell CLL/lymphoma 6
BCR breakpoint cluster region
BHLHE40 basic helix-loop-helix family, member e40
BHLHE41 basic helix-loop-helix family, member e41
BIN1 bridging integrator 1
BIRC5 baculoviral IAP repeat containing 5
BIRC7 baculoviral IAP repeat containing 7
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3
BRCA1 breast cancer 1, early onset
BRD7 bromodomain containing 7
BRK1 BRICK1, SCAR/WAVE actin-nucleating complex subunit
CAV1 caveolin 1, caveolae protein, 22kDa
CCL2 chemokine (C-C motif) ligand 2
CCND1 cyclin D1
CD5 CD5 molecule
CDC20 cell division cycle 20
CDC42 cell division cycle 42
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDH13 cadherin 13
CDK1 cyclin-dependent kinase 1
CDK6 cyclin-dependent kinase 6
CDK9 cyclin-dependent kinase 9
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
CDKN2A cyclin-dependent kinase inhibitor 2A
CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
CDX1 caudal type homeobox 1
CDX2 caudal type homeobox 2
CEP41 centrosomal protein 41kDa
CFLAR CASP8 and FADD-like apoptosis regulator
CIITA class II, major histocompatibility complex, transactivator
CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1
COL4A5 collagen, type IV, alpha 5
COL4A6 collagen, type IV, alpha 6
COPG2 coatomer protein complex, subunit gamma 2
COPS5 COP9 signalosome subunit 5
CPT2 carnitine palmitoyltransferase 2
CREB1 cAMP responsive element binding protein 1
CREBBP CREB binding protein
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
CUX1 cut-like homeobox 1
CXADR coxsackie virus and adenovirus receptor
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1
CYR61 cysteine-rich, angiogenic inducer, 61
CYSLTR1 cysteinyl leukotriene receptor 1
DBF4 DBF4 zinc finger
DCC DCC netrin 1 receptor
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
DEAF1 DEAF1 transcription factor
DICER1 dicer 1, ribonuclease type III
DLEU2 deleted in lymphocytic leukemia 2 (non-protein coding)
DMKN dermokine
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha
DSG2 desmoglein 2
E2F1 E2F transcription factor 1
EDN1 endothelin 1
EGFR epidermal growth factor receptor
EGR1 early growth response 1
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3
EIF4E eukaryotic translation initiation factor 4E
EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1
ELF5 E74-like factor 5 (ets domain transcription factor)
EP300 E1A binding protein p300
EPAS1 endothelial PAS domain protein 1
EPO erythropoietin
ERBB2 erb-b2 receptor tyrosine kinase 2
ERBB3 erb-b2 receptor tyrosine kinase 3
ERN1 endoplasmic reticulum to nucleus signaling 1
ERRFI1 ERBB receptor feedback inhibitor 1
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ESRRG estrogen-related receptor gamma
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit
F3 coagulation factor III (thromboplastin, tissue factor)
FANCC Fanconi anemia, complementation group C
FANCD2 Fanconi anemia, complementation group D2
FANCL Fanconi anemia, complementation group L
FAP fibroblast activation protein, alpha
FASLG Fas ligand (TNF superfamily, member 6)
FERMT2 fermitin family member 2
FGF1 fibroblast growth factor 1 (acidic)
FGF19 fibroblast growth factor 19
FGF2 fibroblast growth factor 2 (basic)
FOS FBJ murine osteosarcoma viral oncogene homolog
FOXM1 forkhead box M1
FOXO1 forkhead box O1
FUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)
G6PD glucose-6-phosphate dehydrogenase
GATA1 GATA binding protein 1 (globin transcription factor 1)
GLS glutaminase
GLTP glycolipid transfer protein
GLTPP1 glycolipid transfer protein pseudogene 1
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2
GNRHR gonadotropin-releasing hormone receptor
GREM1 gremlin 1, DAN family BMP antagonist
GSTP1 glutathione S-transferase pi 1
GTF2I general transcription factor IIi
H2AFX H2A histone family, member X
HAMP hepcidin antimicrobial peptide
HBE1 hemoglobin, epsilon 1
HDAC2 histone deacetylase 2
HDAC3 histone deacetylase 3
HDAC9 histone deacetylase 9
HELLS helicase, lymphoid-specific
HES1 hes family bHLH transcription factor 1
HEXIM1 hexamethylene bis-acetamide inducible 1
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HMOX1 heme oxygenase 1
HNF1A HNF1 homeobox A
HNF4A hepatocyte nuclear factor 4, alpha
HNRNPK heterogeneous nuclear ribonucleoprotein K
HOXA@ homeobox A cluster
HOXC6 homeobox C6
HOXC8 homeobox C8
HPRT1 hypoxanthine phosphoribosyltransferase 1
HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
HSF1 heat shock transcription factor 1
HSPA1B heat shock 70kDa protein 1B
HSPB1 heat shock 27kDa protein 1
ICAM1 intercellular adhesion molecule 1
IDE insulin-degrading enzyme
IFNG interferon, gamma
IFNL1 interferon, lambda 1
IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon
IL10 interleukin 10
IL2 interleukin 2
IL6 interleukin 6
INHA inhibin, alpha
IRF1 interferon regulatory factor 1
IRF4 interferon regulatory factor 4
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
JAM3 junctional adhesion molecule 3
JUN jun proto-oncogene
JUNB jun B proto-oncogene
KAT2B K(lysine) acetyltransferase 2B
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KLF11 Kruppel-like factor 11
KLF4 Kruppel-like factor 4 (gut)
KLF5 Kruppel-like factor 5 (intestinal)
KLF6 Kruppel-like factor 6
KLRK1 killer cell lectin-like receptor subfamily K, member 1
KMT2C lysine (K)-specific methyltransferase 2C
KMT2D lysine (K)-specific methyltransferase 2D
LIMS1 LIM and senescent cell antigen-like domains 1
MAPK14 mitogen-activated protein kinase 14
MARVELD3 MARVEL domain containing 3
MC4R melanocortin 4 receptor
MCOLN1 mucolipin 1
MCOLN2 mucolipin 2
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MEF2A myocyte enhancer factor 2A
MEST mesoderm specific transcript
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MIR106A microRNA 106a
MIR1247 microRNA 1247
MIR15A microRNA 15a
MIR16-1 microRNA 16-1
MIR17HG miR-17-92 cluster host gene
MIR192 microRNA 192
MIR194-1 microRNA 194-1
MIR196B microRNA 196b
MIR215 microRNA 215
MIR221 microRNA 221
MIR27A microRNA 27a
MIR483 microRNA 483
MIR605 microRNA 605
MIR941-1 microRNA 941-1
MITF microphthalmia-associated transcription factor
MLH1 mutL homolog 1
MMP10 matrix metallopeptidase 10
MMP14 matrix metallopeptidase 14 (membrane-inserted)
MTTP microsomal triglyceride transfer protein
MUC2 mucin 2, oligomeric mucus/gel-forming
MUC5AC mucin 5AC, oligomeric mucus/gel-forming
MVP major vault protein
MXD4 MAX dimerization protein 4
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
MZF1 myeloid zinc finger 1
NCL nucleolin
NDRG1 N-myc downstream regulated 1
NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
NFE2L2 nuclear factor, erythroid 2-like 2
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NKX2-1 NK2 homeobox 1
NLK nemo-like kinase
NME1 NME/NM23 nucleoside diphosphate kinase 1
NOTCH1 notch 1
NOTCH4 notch 4
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NR1H3 nuclear receptor subfamily 1, group H, member 3
NR1H4 nuclear receptor subfamily 1, group H, member 4
NR1I2 nuclear receptor subfamily 1, group I, member 2
NR2C2 nuclear receptor subfamily 2, group C, member 2
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NR4A1 nuclear receptor subfamily 4, group A, member 1
NR4A2 nuclear receptor subfamily 4, group A, member 2
NR5A1 nuclear receptor subfamily 5, group A, member 1
NR5A2 nuclear receptor subfamily 5, group A, member 2
NTN1 netrin 1
NUP214 nucleoporin 214kDa
OCLN occludin
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II
PARK7 parkinson protein 7
PAX5 paired box 5
PBX3 pre-B-cell leukemia homeobox 3
PCDH17 protocadherin 17
PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta
PDGFB platelet-derived growth factor beta polypeptide
PECAM1 platelet/endothelial cell adhesion molecule 1
PGR progesterone receptor
PHB prohibitin
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
PLAU plasminogen activator, urokinase
PLIN2 perilipin 2
PML promyelocytic leukemia
PPARA peroxisome proliferator-activated receptor alpha
PPARG peroxisome proliferator-activated receptor gamma
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PROC protein C (inactivator of coagulation factors Va and VIIIa)
PROX1 prospero homeobox 1
PSEN1 presenilin 1
PSMB8 proteasome (prosome, macropain) subunit, beta type, 8
PSMB9 proteasome (prosome, macropain) subunit, beta type, 9
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa
PTGER4 prostaglandin E receptor 4 (subtype EP4)
PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTTG1 pituitary tumor-transforming 1
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
RAD51 RAD51 recombinase
RAD51C RAD51 paralog C
RASA1 RAS p21 protein activator (GTPase activating protein) 1
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RFWD2 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1
RNF41 ring finger protein 41, E3 ubiquitin protein ligase
RXRA retinoid X receptor, alpha
S100A14 S100 calcium binding protein A14
S100A7 S100 calcium binding protein A7
SELE selectin E
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
SERPINB5 serpin peptidase inhibitor, clade B (ovalbumin), member 5
SET SET nuclear proto-oncogene
SETD1A SET domain containing 1A
SFPQ splicing factor proline/glutamine-rich
SFRP1 secreted frizzled-related protein 1
SIGMAR1 sigma non-opioid intracellular receptor 1
SIRT1 sirtuin 1
SIX1 SIX homeobox 1
SLC10A2 solute carrier family 10 (sodium/bile acid cotransporter), member 2
SLC19A1 solute carrier family 19 (folate transporter), member 1
SLC26A4 solute carrier family 26 (anion exchanger), member 4
SLC31A1 solute carrier family 31 (copper transporter), member 1
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4
SMAD2 SMAD family member 2
SMAD3 SMAD family member 3
SMAD4 SMAD family member 4
SMAD5 SMAD family member 5
SMAD7 SMAD family member 7
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
SMURF2 SMAD specific E3 ubiquitin protein ligase 2
SNAI1 snail family zinc finger 1
SNAI2 snail family zinc finger 2
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOX9 SRY (sex determining region Y)-box 9
SP1 Sp1 transcription factor
SP3 Sp3 transcription factor
SPHK1 sphingosine kinase 1
SPINK5 serine peptidase inhibitor, Kazal type 5
SREBF1 sterol regulatory element binding transcription factor 1
SREBF2 sterol regulatory element binding transcription factor 2
ST3GAL5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5
STAR steroidogenic acute regulatory protein
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STAT6 signal transducer and activator of transcription 6, interleukin-4 induced
SULT1E1 sulfotransferase family 1E, estrogen-preferring, member 1
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
TERT telomerase reverse transcriptase
TFEB transcription factor EB
TFPI2 tissue factor pathway inhibitor 2
TGFB1 transforming growth factor, beta 1
TGFBR3 transforming growth factor, beta receptor III
TH tyrosine hydroxylase
TIAM1 T-cell lymphoma invasion and metastasis 1
TLR9 toll-like receptor 9
TMEM185A transmembrane protein 185A
TNC tenascin C
TNF tumor necrosis factor
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
TNIP1 TNFAIP3 interacting protein 1
TOX3 TOX high mobility group box family member 3
TP53 tumor protein p53
TP73 tumor protein p73
TWIST1 twist family bHLH transcription factor 1
TXNRD1 thioredoxin reductase 1
UBE2B ubiquitin-conjugating enzyme E2B
UBE2C ubiquitin-conjugating enzyme E2C
UGT2B7 UDP glucuronosyltransferase 2 family, polypeptide B7
VCAM1 vascular cell adhesion molecule 1
VEGFA vascular endothelial growth factor A
WDR82 WD repeat domain 82
WT1 Wilms tumor 1
XAF1 XIAP associated factor 1
XBP1 X-box binding protein 1
XPA xeroderma pigmentosum, complementation group A
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6
YPEL3 yippee-like 3 (Drosophila)
ZBTB17 zinc finger and BTB domain containing 17
ZFP36 ZFP36 ring finger protein