transcriptionally silent chromatin Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The ordered and organized complex of DNA and protein that forms regions of the chromosome that are not being actively transcribed. (Gene Ontology, GO_0035328)
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Genes

63 proteins co-occuring with the transcriptionally silent chromatin cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
LBX2 ladybird homeobox 2 1.18132
ATF7IP2 activating transcription factor 7 interacting protein 2 1.06903
ZBTB33 zinc finger and BTB domain containing 33 0.994162
ATF7IP activating transcription factor 7 interacting protein 0.905996
HTR1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled 0.862609
HIST1H4K histone cluster 1, H4k 0.782784
HIST1H4J histone cluster 1, H4j 0.782784
HIST1H4I histone cluster 1, H4i 0.782784
HIST2H4B histone cluster 2, H4b 0.782784
HIST1H4D histone cluster 1, H4d 0.782784
HIST1H4E histone cluster 1, H4e 0.782784
HIST2H4A histone cluster 2, H4a 0.782784
HIST1H4H histone cluster 1, H4h 0.782784
HIST1H4C histone cluster 1, H4c 0.782784
HIST1H4B histone cluster 1, H4b 0.782784
HIST1H4A histone cluster 1, H4a 0.782784
HIST4H4 histone cluster 4, H4 0.782326
HIST1H4F histone cluster 1, H4f 0.782326
HIST1H4L histone cluster 1, H4l 0.782326
TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa 0.755437
MECP2 methyl CpG binding protein 2 0.720351
SETDB1 SET domain, bifurcated 1 0.696465
HIST1H3D histone cluster 1, H3d 0.685517
HIST1H3I histone cluster 1, H3i 0.685517
HIST1H3J histone cluster 1, H3j 0.685517
HIST1H3G histone cluster 1, H3g 0.685517
HIST1H3F histone cluster 1, H3f 0.685517
HIST1H3B histone cluster 1, H3b 0.685517
HOXB8 homeobox B8 0.681591
MBD1 methyl-CpG binding domain protein 1 0.638005
VPRBP Vpr (HIV-1) binding protein 0.630318
HIST1H3E histone cluster 1, H3e 0.598538
HIST1H3C histone cluster 1, H3c 0.597276
HIST1H3H histone cluster 1, H3h 0.597276
HIST1H3A histone cluster 1, H3a 0.569248
NUTM1 NUT midline carcinoma, family member 1 0.565092
TBX2 T-box 2 0.54606
GTF2B general transcription factor IIB 0.507163
RNF2 ring finger protein 2 0.495395
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.468802
H3F3A H3 histone, family 3A 0.464798
H3F3B H3 histone, family 3B (H3.3B) 0.464798
CHD3 chromodomain helicase DNA binding protein 3 0.460401
HIST2H3C histone cluster 2, H3c 0.404415
HIST2H3D histone cluster 2, H3d 0.404415
HIST2H3A histone cluster 2, H3a 0.404415
H2AFV H2A histone family, member V 0.33511
HIST2H2AC histone cluster 2, H2ac 0.311478
HIST2H2AA4 histone cluster 2, H2aa4 0.311105
HIST2H2AA3 histone cluster 2, H2aa3 0.311105
FMR1 fragile X mental retardation 1 0.286983
E2F4 E2F transcription factor 4, p107/p130-binding 0.283663
CEBPD CCAAT/enhancer binding protein (C/EBP), delta 0.281085
SUZ12 SUZ12 polycomb repressive complex 2 subunit 0.266774
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 0.26312
SATB1 SATB homeobox 1 0.239916
HDAC1 histone deacetylase 1 0.236683
NRF1 nuclear respiratory factor 1 0.216111
BRD4 bromodomain containing 4 0.194698
HMGA1 high mobility group AT-hook 1 0.173273
HDAC9 histone deacetylase 9 0.172735
KCNQ1 potassium channel, voltage gated KQT-like subfamily Q, member 1 0.165932
MYF5 myogenic factor 5 0.165697