transcriptionally active chromatin Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed. (Gene Ontology, GO_0035327)
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124 proteins co-occuring with the transcriptionally active chromatin cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
H3F3B H3 histone, family 3B (H3.3B) 1.10766
H3F3A H3 histone, family 3A 1.10766
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 1.04632
HMGN2 high mobility group nucleosomal binding domain 2 0.935488
DPPA4 developmental pluripotency associated 4 0.935016
CBFB core-binding factor, beta subunit 0.86123
HIST1H4K histone cluster 1, H4k 0.791022
HIST2H4B histone cluster 2, H4b 0.791022
HIST1H4H histone cluster 1, H4h 0.791022
HIST1H4I histone cluster 1, H4i 0.791022
HIST1H4J histone cluster 1, H4j 0.791022
HIST1H4D histone cluster 1, H4d 0.791022
HIST1H4A histone cluster 1, H4a 0.791022
HIST1H4B histone cluster 1, H4b 0.791022
HIST1H4E histone cluster 1, H4e 0.791022
HIST1H4C histone cluster 1, H4c 0.791022
HIST2H4A histone cluster 2, H4a 0.790564
HIST4H4 histone cluster 4, H4 0.790564
HIST1H4L histone cluster 1, H4l 0.790564
HIST1H4F histone cluster 1, H4f 0.790564
HIST2H3A histone cluster 2, H3a 0.764982
HIST2H3C histone cluster 2, H3c 0.764982
HIST2H3D histone cluster 2, H3d 0.764982
HIST1H3E histone cluster 1, H3e 0.754076
HIST1H3H histone cluster 1, H3h 0.752716
HIST1H3C histone cluster 1, H3c 0.752716
TCFL5 transcription factor-like 5 (basic helix-loop-helix) 0.727047
HIST2H2AC histone cluster 2, H2ac 0.723472
HIST2H2AA3 histone cluster 2, H2aa3 0.723026
HIST2H2AA4 histone cluster 2, H2aa4 0.723026
HIST1H3A histone cluster 1, H3a 0.72258
HDAC9 histone deacetylase 9 0.720797
CSRP2BP CSRP2 binding protein 0.699543
TOMM70A translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) 0.645716
HTR1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled 0.629892
HOXD4 homeobox D4 0.601066
ILF2 interleukin enhancer binding factor 2 0.583431
H2AFV H2A histone family, member V 0.58134
H2AFB1 H2A histone family, member B1 0.577999
H2AFY H2A histone family, member Y 0.577164
H2AFB2 H2A histone family, member B2 0.574244
PPM1E protein phosphatase, Mg2+/Mn2+ dependent, 1E 0.493371
KAT8 K(lysine) acetyltransferase 8 0.487307
HIST1H2AD histone cluster 1, H2ad 0.478038
HIST1H2AH histone cluster 1, H2ah 0.478038
HIST1H2AJ histone cluster 1, H2aj 0.478038
H2AFJ H2A histone family, member J 0.478038
HIST1H2AM histone cluster 1, H2am 0.478038
HIST1H2AG histone cluster 1, H2ag 0.476831
H2AFY2 H2A histone family, member Y2 0.474822
HIST1H2AE histone cluster 1, H2ae 0.47442
HIST1H2AB histone cluster 1, H2ab 0.47442
HIST1H3I histone cluster 1, H3i 0.468401
HIST1H3J histone cluster 1, H3j 0.468401
HIST1H3D histone cluster 1, H3d 0.468401
HIST1H3G histone cluster 1, H3g 0.468401
HIST1H3F histone cluster 1, H3f 0.468401
HIST1H3B histone cluster 1, H3b 0.468401
THRSP thyroid hormone responsive 0.455214
ZNF331 zinc finger protein 331 0.452427
DPPA2 developmental pluripotency associated 2 0.445672
CHD1 chromodomain helicase DNA binding protein 1 0.436565
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 0.41612
BRD7 bromodomain containing 7 0.411039
GFI1B growth factor independent 1B transcription repressor 0.409479
CLGN calmegin 0.40247
HMGB2 high mobility group box 2 0.400139
TADA2A transcriptional adaptor 2A 0.399751
DNASE1 deoxyribonuclease I 0.397423
SPEG SPEG complex locus 0.395485
TOP1 topoisomerase (DNA) I 0.395098
KDM5A lysine (K)-specific demethylase 5A 0.377738
HDAC1 histone deacetylase 1 0.369301
IL9 interleukin 9 0.366623
MEGF6 multiple EGF-like-domains 6 0.358609
RNF20 ring finger protein 20, E3 ubiquitin protein ligase 0.355183
HIST1H1E histone cluster 1, H1e 0.354802
NEUROG2 neurogenin 2 0.352901
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 0.350622
HIST1H2BA histone cluster 1, H2ba 0.341151
BRDT bromodomain, testis-specific 0.339261
NFE2 nuclear factor, erythroid 2 0.334356
HOXA5 homeobox A5 0.328708
CREBBP CREB binding protein 0.317082
SGCE sarcoglycan, epsilon 0.304771
STRA8 stimulated by retinoic acid 8 0.300682
HOXA10 homeobox A10 0.290308
SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 0.290308
NANOG Nanog homeobox 0.283295
DOT1L DOT1-like histone H3K79 methyltransferase 0.275202
SPTB spectrin, beta, erythrocytic 0.272633
BRD3 bromodomain containing 3 0.257652
HTR2C 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 0.256925
SPTA1 spectrin, alpha, erythrocytic 1 0.253653
HDAC8 histone deacetylase 8 0.246407
GTF3A general transcription factor IIIA 0.240636
HMGN1 high mobility group nucleosome binding domain 1 0.228819
NKX2-2 NK2 homeobox 2 0.222436
H1F0 H1 histone family, member 0 0.218563
BRD2 bromodomain containing 2 0.213669
HCFC1 host cell factor C1 0.208825
SNRNP40 small nuclear ribonucleoprotein 40kDa (U5) 0.207451
IRF2 interferon regulatory factor 2 0.197993
MN1 meningioma (disrupted in balanced translocation) 1 0.196999
PITX2 paired-like homeodomain 2 0.192423
GATA4 GATA binding protein 4 0.180045
RCOR1 REST corepressor 1 0.174911
HIST1H2BH histone cluster 1, H2bh 0.174635
HIST2H2BF histone cluster 2, H2bf 0.174635
HIST3H2BB histone cluster 3, H2bb 0.174635
HIST1H2BD histone cluster 1, H2bd 0.174361
HIST1H2BC histone cluster 1, H2bc 0.173543
HIST1H2BF histone cluster 1, H2bf 0.173543
GFI1 growth factor independent 1 transcription repressor 0.173273
C4A complement component 4A (Rodgers blood group) 0.169859
H2AFX H2A histone family, member X 0.166884
SLPI secretory leukocyte peptidase inhibitor 0.165697
GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa 0.162763
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 0.161484
NR2F2 nuclear receptor subfamily 2, group F, member 2 0.161275
RBBP4 retinoblastoma binding protein 4 0.160863
DNMT1 DNA (cytosine-5-)-methyltransferase 1 0.160456
MAP2K4 mitogen-activated protein kinase kinase 4 0.160053
KLF1 Kruppel-like factor 1 (erythroid) 0.158692