transcription regulatory region sequence-specific dna binding Gene Set

Dataset GO Molecular Function Annotations
Category structural or functional annotations
Type molecular function
Description Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. (Gene Ontology, GO_0000976)
External Link http://amigo.geneontology.org/amigo/term/GO:0000976
Similar Terms
Downloads & Tools

Genes

440 genes performing the transcription regulatory region sequence-specific dna binding molecular function from the curated GO Molecular Function Annotations dataset.

Symbol Name
ACTB actin, beta
ACTL6A actin-like 6A
AEBP1 AE binding protein 1
AEBP2 AE binding protein 2
AGO1 argonaute RISC catalytic component 1
AIRE autoimmune regulator
AKNA AT-hook transcription factor
ALX1 ALX homeobox 1
AR androgen receptor
ARHGAP35 Rho GTPase activating protein 35
ARID3A AT rich interactive domain 3A (BRIGHT-like)
ARID3B AT rich interactive domain 3B (BRIGHT-like)
ARID5B AT rich interactive domain 5B (MRF1-like)
ARNTL aryl hydrocarbon receptor nuclear translocator-like
ARX aristaless related homeobox
ASCL1 achaete-scute family bHLH transcription factor 1
ASCL2 achaete-scute family bHLH transcription factor 2
ATF1 activating transcription factor 1
ATF2 activating transcription factor 2
ATF3 activating transcription factor 3
ATF4 activating transcription factor 4
ATF5 activating transcription factor 5
ATF6 activating transcription factor 6
ATOH1 atonal homolog 1 (Drosophila)
BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2
BAHD1 bromo adjacent homology domain containing 1
BARX2 BARX homeobox 2
BATF3 basic leucine zipper transcription factor, ATF-like 3
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein)
BCL11B B-cell CLL/lymphoma 11B (zinc finger protein)
BCL6 B-cell CLL/lymphoma 6
BHLHA15 basic helix-loop-helix family, member a15
BHLHE41 basic helix-loop-helix family, member e41
CARF calcium responsive transcription factor
CC2D1A coiled-coil and C2 domain containing 1A
CC2D1B coiled-coil and C2 domain containing 1B
CDX1 caudal type homeobox 1
CDX2 caudal type homeobox 2
CDX4 caudal type homeobox 4
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CEBPD CCAAT/enhancer binding protein (C/EBP), delta
CEBPE CCAAT/enhancer binding protein (C/EBP), epsilon
CEBPZ CCAAT/enhancer binding protein (C/EBP), zeta
CGGBP1 CGG triplet repeat binding protein 1
CHD2 chromodomain helicase DNA binding protein 2
CHD4 chromodomain helicase DNA binding protein 4
CIART circadian associated repressor of transcription
CLOCK clock circadian regulator
CREB1 cAMP responsive element binding protein 1
CREB3 cAMP responsive element binding protein 3
CREB3L2 cAMP responsive element binding protein 3-like 2
CREB3L3 cAMP responsive element binding protein 3-like 3
CREB3L4 cAMP responsive element binding protein 3-like 4
CREBBP CREB binding protein
CREM cAMP responsive element modulator
CRX cone-rod homeobox
CRY1 cryptochrome circadian clock 1
CRY2 cryptochrome circadian clock 2
CTCF CCCTC-binding factor (zinc finger protein)
CTCFL CCCTC-binding factor (zinc finger protein)-like
CUX1 cut-like homeobox 1
CUX2 cut-like homeobox 2
DBP D site of albumin promoter (albumin D-box) binding protein
DDIT3 DNA-damage-inducible transcript 3
DDN dendrin
DLX4 distal-less homeobox 4
DLX5 distal-less homeobox 5
DMRT1 doublesex and mab-3 related transcription factor 1
DMRT2 doublesex and mab-3 related transcription factor 2
DMRT3 doublesex and mab-3 related transcription factor 3
DMRTA1 DMRT-like family A1
DMRTA2 DMRT-like family A2
DMRTB1 DMRT-like family B with proline-rich C-terminal, 1
DMRTC2 DMRT-like family C2
DPF2 D4, zinc and double PHD fingers family 2
E2F4 E2F transcription factor 4, p107/p130-binding
E2F7 E2F transcription factor 7
E2F8 E2F transcription factor 8
E4F1 E4F transcription factor 1
EAF2 ELL associated factor 2
EGR1 early growth response 1
EGR2 early growth response 2
EHF ets homologous factor
ELF1 E74-like factor 1 (ets domain transcription factor)
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific )
ELF4 E74-like factor 4 (ets domain transcription factor)
ELF5 E74-like factor 5 (ets domain transcription factor)
ELK1 ELK1, member of ETS oncogene family
ELK3 ELK3, ETS-domain protein (SRF accessory protein 2)
EN1 engrailed homeobox 1
EOMES eomesodermin
EP300 E1A binding protein p300
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ESRRA estrogen-related receptor alpha
ESRRB estrogen-related receptor beta
ESRRG estrogen-related receptor gamma
ESX1 ESX homeobox 1
ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2
ETV1 ets variant 1
ETV2 ets variant 2
ETV4 ets variant 4
ETV5 ets variant 5
ETV6 ets variant 6
ETV7 ets variant 7
FEZF1 FEZ family zinc finger 1
FEZF2 FEZ family zinc finger 2
FLI1 Fli-1 proto-oncogene, ETS transcription factor
FOS FBJ murine osteosarcoma viral oncogene homolog
FOSL1 FOS-like antigen 1
FOSL2 FOS-like antigen 2
FOXA2 forkhead box A2
FOXC1 forkhead box C1
FOXD1 forkhead box D1
FOXD3 forkhead box D3
FOXF1 forkhead box F1
FOXF2 forkhead box F2
FOXI1 forkhead box I1
FOXJ1 forkhead box J1
FOXJ2 forkhead box J2
FOXK1 forkhead box K1
FOXK2 forkhead box K2
FOXN4 forkhead box N4
FOXP2 forkhead box P2
FOXP4 forkhead box P4
FUBP3 far upstream element (FUSE) binding protein 3
GABPA GA binding protein transcription factor, alpha subunit 60kDa
GATA1 GATA binding protein 1 (globin transcription factor 1)
GATA2 GATA binding protein 2
GATA3 GATA binding protein 3
GATA4 GATA binding protein 4
GATA5 GATA binding protein 5
GATA6 GATA binding protein 6
GATAD2B GATA zinc finger domain containing 2B
GCFC2 GC-rich sequence DNA-binding factor 2
GCM1 glial cells missing homolog 1 (Drosophila)
GLI3 GLI family zinc finger 3
GLIS1 GLIS family zinc finger 1
GLIS3 GLIS family zinc finger 3
GRHL1 grainyhead-like 1 (Drosophila)
GSX1 GS homeobox 1
GZF1 GDNF-inducible zinc finger protein 1
H2AFY H2A histone family, member Y
H2AFY2 H2A histone family, member Y2
H2AFZ H2A histone family, member Z
HAND1 heart and neural crest derivatives expressed 1
HAND2 heart and neural crest derivatives expressed 2
HDAC1 histone deacetylase 1
HDAC2 histone deacetylase 2
HEYL hes-related family bHLH transcription factor with YRPW motif-like
HHEX hematopoietically expressed homeobox
HNF4A hepatocyte nuclear factor 4, alpha
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
HNRNPK heterogeneous nuclear ribonucleoprotein K
HOXA10 homeobox A10
HOXA5 homeobox A5
HOXA7 homeobox A7
HOXB3 homeobox B3
HOXB5 homeobox B5
HOXC11 homeobox C11
HOXD8 homeobox D8
HOXD9 homeobox D9
HSF1 heat shock transcription factor 1
HSF2 heat shock transcription factor 2
IFI16 interferon, gamma-inducible protein 16
INSM1 insulinoma-associated 1
IRF1 interferon regulatory factor 1
IRF2 interferon regulatory factor 2
IRF4 interferon regulatory factor 4
IRF7 interferon regulatory factor 7
ISL1 ISL LIM homeobox 1
JUN jun proto-oncogene
JUNB jun B proto-oncogene
JUND jun D proto-oncogene
KDM3A lysine (K)-specific demethylase 3A
KDM6A lysine (K)-specific demethylase 6A
KLF1 Kruppel-like factor 1 (erythroid)
KLF10 Kruppel-like factor 10
KLF12 Kruppel-like factor 12
KLF4 Kruppel-like factor 4 (gut)
KLF5 Kruppel-like factor 5 (intestinal)
KMT2A lysine (K)-specific methyltransferase 2A
LDB1 LIM domain binding 1
LEF1 lymphoid enhancer-binding factor 1
LMO2 LIM domain only 2 (rhombotin-like 1)
LMO4 LIM domain only 4
MAFK v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K
MAZ MYC-associated zinc finger protein (purine-binding transcription factor)
MBD2 methyl-CpG binding domain protein 2
MBD3 methyl-CpG binding domain protein 3
MED1 mediator complex subunit 1
MED12 mediator complex subunit 12
MEF2A myocyte enhancer factor 2A
MEF2C myocyte enhancer factor 2C
MEF2D myocyte enhancer factor 2D
MEIS1 Meis homeobox 1
MEIS2 Meis homeobox 2
MEOX1 mesenchyme homeobox 1
MEOX2 mesenchyme homeobox 2
MESP1 mesoderm posterior basic helix-loop-helix transcription factor 1
MITF microphthalmia-associated transcription factor
MIXL1 Mix paired-like homeobox
MKL1 megakaryoblastic leukemia (translocation) 1
MKX mohawk homeobox
MLX MLX, MAX dimerization protein
MNT MAX network transcriptional repressor
MSC musculin
MSX1 msh homeobox 1
MSX2 msh homeobox 2
MTA1 metastasis associated 1
MTA2 metastasis associated 1 family, member 2
MTF1 metal-regulatory transcription factor 1
MUC1 mucin 1, cell surface associated
MXD1 MAX dimerization protein 1
MYB v-myb avian myeloblastosis viral oncogene homolog
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1
MYBL2 v-myb avian myeloblastosis viral oncogene homolog-like 2
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYF5 myogenic factor 5
MYF6 myogenic factor 6 (herculin)
MYOCD myocardin
MYOD1 myogenic differentiation 1
MYOG myogenin (myogenic factor 4)
MYPOP Myb-related transcription factor, partner of profilin
MYT1 myelin transcription factor 1
MZF1 myeloid zinc finger 1
NACC2 NACC family member 2, BEN and BTB (POZ) domain containing
NANOG Nanog homeobox
NEUROD1 neuronal differentiation 1
NEUROD2 neuronal differentiation 2
NEUROD6 neuronal differentiation 6
NEUROG3 neurogenin 3
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive
NFATC1 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
NFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
NFATC4 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4
NFE2L1 nuclear factor, erythroid 2-like 1
NFE2L2 nuclear factor, erythroid 2-like 2
NFE2L3 nuclear factor, erythroid 2-like 3
NFIA nuclear factor I/A
NFIB nuclear factor I/B
NFIC nuclear factor I/C (CCAAT-binding transcription factor)
NFIL3 nuclear factor, interleukin 3 regulated
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
NFX1 nuclear transcription factor, X-box binding 1
NFXL1 nuclear transcription factor, X-box binding-like 1
NFYA nuclear transcription factor Y, alpha
NHLH1 nescient helix loop helix 1
NKX2-5 NK2 homeobox 5
NKX2-8 NK2 homeobox 8
NKX3-1 NK3 homeobox 1
NKX3-2 NK3 homeobox 2
NKX6-1 NK6 homeobox 1
NLRC5 NLR family, CARD domain containing 5
NOBOX NOBOX oogenesis homeobox
NPAS4 neuronal PAS domain protein 4
NR1D1 nuclear receptor subfamily 1, group D, member 1
NR1D2 nuclear receptor subfamily 1, group D, member 2
NR1H2 nuclear receptor subfamily 1, group H, member 2
NR1H4 nuclear receptor subfamily 1, group H, member 4
NR1I2 nuclear receptor subfamily 1, group I, member 2
NR1I3 nuclear receptor subfamily 1, group I, member 3
NR2F6 nuclear receptor subfamily 2, group F, member 6
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
NR4A2 nuclear receptor subfamily 4, group A, member 2
NR5A2 nuclear receptor subfamily 5, group A, member 2
NR6A1 nuclear receptor subfamily 6, group A, member 1
NRF1 nuclear respiratory factor 1
NRIP1 nuclear receptor interacting protein 1
NRL neural retina leucine zipper
ONECUT2 one cut homeobox 2
ONECUT3 one cut homeobox 3
OTX1 orthodenticle homeobox 1
OTX2 orthodenticle homeobox 2
OVOL1 ovo-like zinc finger 1
PAX2 paired box 2
PAX4 paired box 4
PAX5 paired box 5
PAX6 paired box 6
PAX8 paired box 8
PAX9 paired box 9
PAXBP1 PAX3 and PAX7 binding protein 1
PBX1 pre-B-cell leukemia homeobox 1
PCGF6 polycomb group ring finger 6
PDX1 pancreatic and duodenal homeobox 1
PER1 period circadian clock 1
PER2 period circadian clock 2
PGR progesterone receptor
PHOX2A paired-like homeobox 2a
PHOX2B paired-like homeobox 2b
PITX1 paired-like homeodomain 1
PITX2 paired-like homeodomain 2
PITX3 paired-like homeodomain 3
PLAG1 pleiomorphic adenoma gene 1
PLAGL1 pleiomorphic adenoma gene-like 1
POU1F1 POU class 1 homeobox 1
POU2F3 POU class 2 homeobox 3
POU4F1 POU class 4 homeobox 1
POU4F2 POU class 4 homeobox 2
POU4F3 POU class 4 homeobox 3
PPARA peroxisome proliferator-activated receptor alpha
PPARG peroxisome proliferator-activated receptor gamma
PRDM1 PR domain containing 1, with ZNF domain
PRDM5 PR domain containing 5
PRMT5 protein arginine methyltransferase 5
PROX1 prospero homeobox 1
RARA retinoic acid receptor, alpha
RARB retinoic acid receptor, beta
RARG retinoic acid receptor, gamma
RAX retina and anterior neural fold homeobox
RBBP4 retinoblastoma binding protein 4
RBPJ recombination signal binding protein for immunoglobulin kappa J region
RBPJL recombination signal binding protein for immunoglobulin kappa J region-like
REL v-rel avian reticuloendotheliosis viral oncogene homolog
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RELB v-rel avian reticuloendotheliosis viral oncogene homolog B
REST RE1-silencing transcription factor
RFX1 regulatory factor X, 1 (influences HLA class II expression)
RFX2 regulatory factor X, 2 (influences HLA class II expression)
RFX3 regulatory factor X, 3 (influences HLA class II expression)
RFX4 regulatory factor X, 4 (influences HLA class II expression)
RFX5 regulatory factor X, 5 (influences HLA class II expression)
RFX6 regulatory factor X, 6
RFX7 regulatory factor X, 7
RFX8 RFX family member 8, lacking RFX DNA binding domain
RORA RAR-related orphan receptor A
RREB1 ras responsive element binding protein 1
RUNX1 runt-related transcription factor 1
RUNX2 runt-related transcription factor 2
RUNX3 runt-related transcription factor 3
RUVBL2 RuvB-like AAA ATPase 2
RXRA retinoid X receptor, alpha
RXRB retinoid X receptor, beta
RXRG retinoid X receptor, gamma
SATB1 SATB homeobox 1
SETX senataxin
SFPQ splicing factor proline/glutamine-rich
SIN3A SIN3 transcription regulator family member A
SIRT1 sirtuin 1
SIX1 SIX homeobox 1
SIX3 SIX homeobox 3
SKIL SKI-like proto-oncogene
SMAD1 SMAD family member 1
SMAD2 SMAD family member 2
SMAD3 SMAD family member 3
SMAD4 SMAD family member 4
SMAD5 SMAD family member 5
SMAD6 SMAD family member 6
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
SMYD3 SET and MYND domain containing 3
SNAI1 snail family zinc finger 1
SOX1 SRY (sex determining region Y)-box 1
SOX10 SRY (sex determining region Y)-box 10
SOX11 SRY (sex determining region Y)-box 11
SOX12 SRY (sex determining region Y)-box 12
SOX18 SRY (sex determining region Y)-box 18
SOX2 SRY (sex determining region Y)-box 2
SOX3 SRY (sex determining region Y)-box 3
SOX4 SRY (sex determining region Y)-box 4
SOX8 SRY (sex determining region Y)-box 8
SOX9 SRY (sex determining region Y)-box 9
SP1 Sp1 transcription factor
SP3 Sp3 transcription factor
SPI1 Spi-1 proto-oncogene
SREBF2 sterol regulatory element binding transcription factor 2
SRF serum response factor (c-fos serum response element-binding transcription factor)
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT5A signal transducer and activator of transcription 5A
STAT5B signal transducer and activator of transcription 5B
STAT6 signal transducer and activator of transcription 6, interleukin-4 induced
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila)
SUV39H2 suppressor of variegation 3-9 homolog 2 (Drosophila)
T T, brachyury homolog (mouse)
TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa
TAL1 T-cell acute lymphocytic leukemia 1
TBR1 T-box, brain, 1
TBX15 T-box 15
TBX18 T-box 18
TBX19 T-box 19
TBX2 T-box 2
TBX20 T-box 20
TBX3 T-box 3
TBX5 T-box 5
TCF12 transcription factor 12
TCF3 transcription factor 3
TCF4 transcription factor 4
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box)
TFAM transcription factor A, mitochondrial
TFAP2A transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
TFAP2B transcription factor AP-2 beta (activating enhancer binding protein 2 beta)
TFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
TFAP2D transcription factor AP-2 delta (activating enhancer binding protein 2 delta)
TFAP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon)
TFAP4 transcription factor AP-4 (activating enhancer binding protein 4)
TGIF1 TGFB-induced factor homeobox 1
THRAP3 thyroid hormone receptor associated protein 3
TNRC18 trinucleotide repeat containing 18
TOP1 topoisomerase (DNA) I
TP53 tumor protein p53
TP73 tumor protein p73
TXK TXK tyrosine kinase
UHRF1 ubiquitin-like with PHD and ring finger domains 1
USF2 upstream transcription factor 2, c-fos interacting
USP3 ubiquitin specific peptidase 3
WBP2 WW domain binding protein 2
XBP1 X-box binding protein 1
XRN2 5'-3' exoribonuclease 2
YAP1 Yes-associated protein 1
YBX1 Y box binding protein 1
YBX3 Y box binding protein 3
YY1 YY1 transcription factor
ZBTB16 zinc finger and BTB domain containing 16
ZBTB4 zinc finger and BTB domain containing 4
ZGPAT zinc finger, CCCH-type with G patch domain
ZIC3 Zic family member 3
ZKSCAN3 zinc finger with KRAB and SCAN domains 3
ZNF148 zinc finger protein 148
ZNF217 zinc finger protein 217
ZNF219 zinc finger protein 219
ZNF277 zinc finger protein 277
ZNF281 zinc finger protein 281
ZNF335 zinc finger protein 335
ZNF350 zinc finger protein 350
ZNF395 zinc finger protein 395
ZNF431 zinc finger protein 431
ZNF516 zinc finger protein 516
ZNF536 zinc finger protein 536
ZNF639 zinc finger protein 639
ZNF746 zinc finger protein 746
ZNF750 zinc finger protein 750
ZSCAN21 zinc finger and SCAN domain containing 21