transcription export complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans. (Gene Ontology, GO_0000346)
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41 proteins co-occuring with the transcription export complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
THOC1 THO complex 1 2.23828
THOC5 THO complex 5 2.11512
SARNP SAP domain containing ribonucleoprotein 2.06777
THOC6 THO complex 6 1.94112
NXF1 nuclear RNA export factor 1 1.79243
THOC2 THO complex 2 1.50622
TREX2 three prime repair exonuclease 2 1.47231
ZC3H18 zinc finger CCCH-type containing 18 1.35266
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 1.24707
THOC7 THO complex 7 1.14341
NFX1 nuclear transcription factor, X-box binding 1 1.04934
HOXB3 homeobox B3 1.00695
DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A 0.923259
CBX2 chromobox homolog 2 0.836433
NUTF2 nuclear transport factor 2 0.778212
CPSF6 cleavage and polyadenylation specific factor 6, 68kDa 0.757253
NXT1 nuclear transport factor 2-like export factor 1 0.707482
SRSF3 serine/arginine-rich splicing factor 3 0.621804
RPS5 ribosomal protein S5 0.605284
ALYREF Aly/REF export factor 0.559285
RNGTT RNA guanylyltransferase and 5'-phosphatase 0.558457
RAE1 ribonucleic acid export 1 0.541529
PRPF19 pre-mRNA processing factor 19 0.537005
UBE2D2 ubiquitin-conjugating enzyme E2D 2 0.473617
LEMD3 LEM domain containing 3 0.469604
AICDA activation-induced cytidine deaminase 0.33511
NUP153 nucleoporin 153kDa 0.320451
UBE2H ubiquitin-conjugating enzyme E2H 0.223497
HIST2H2BF histone cluster 2, H2bf 0.222083
HIST3H2BB histone cluster 3, H2bb 0.222083
HIST1H2BH histone cluster 1, H2bh 0.222083
HIST1H2BD histone cluster 1, H2bd 0.222083
LGALS1 lectin, galactoside-binding, soluble, 1 0.221025
HIST1H2BC histone cluster 1, H2bc 0.220673
HIST1H2BF histone cluster 1, H2bf 0.220673
HIST1H2BA histone cluster 1, H2ba 0.219617
CDK9 cyclin-dependent kinase 9 0.213669
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.21124
ACIN1 apoptotic chromatin condensation inducer 1 0.203361
EMD emerin 0.19601
HSPA4 heat shock 70kDa protein 4 0.162763