submerged culture Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description A method for growing pure cultures of aerobic bacteria in which microorganisms are incubated in a liquid medium subjected to continuous, vigorous agitation. (BRENDA Tissue and Enzyme Source Ontology, BTO_0004503)
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Genes

101 proteins co-occuring with the tissue submerged culture in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
FLG filaggrin 1.18556
IVL involucrin 1.15052
POLR1A polymerase (RNA) I polypeptide A, 194kDa 1.14875
SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit 1.09076
PHKA1 phosphorylase kinase, alpha 1 (muscle) 1.07265
SPRR1B small proline-rich protein 1B 1.06647
ATF7 activating transcription factor 7 1.00938
CASP14 caspase 14, apoptosis-related cysteine peptidase 1.00022
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1 0.997601
IGF2-AS IGF2 antisense RNA 0.929764
KRT1 keratin 1, type II 0.905831
KRT10 keratin 10, type I 0.892223
ABHD14A abhydrolase domain containing 14A 0.883321
FTSJ1 FtsJ RNA methyltransferase homolog 1 (E. coli) 0.829453
GPD1 glycerol-3-phosphate dehydrogenase 1 (soluble) 0.811473
TGM1 transglutaminase 1 0.806882
PCDH1 protocadherin 1 0.804796
GFER growth factor, augmenter of liver regeneration 0.788964
CAT catalase 0.771514
GLYAT glycine-N-acyltransferase 0.762811
KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 0.76157
KRT3 keratin 3, type II 0.740915
CLDN2 claudin 2 0.717472
KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 0.713369
CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 0.701899
CSN1S1 casein alpha s1 0.645695
SOD2 superoxide dismutase 2, mitochondrial 0.639619
CPSF3L cleavage and polyadenylation specific factor 3-like 0.639619
LOR loricrin 0.626677
PPAN peter pan homolog (Drosophila) 0.609735
CBS cystathionine-beta-synthase 0.592845
LYZ lysozyme 0.588031
TPRG1L tumor protein p63 regulated 1-like 0.588031
EXO1 exonuclease 1 0.58242
MIRLET7B microRNA let-7b 0.576816
AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0.563238
KRT14 keratin 14, type I 0.554876
GAS1 growth arrest-specific 1 0.551695
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 0.544152
MEGF6 multiple EGF-like-domains 6 0.537021
MED28 mediator complex subunit 28 0.530693
KRT12 keratin 12, type I 0.518465
ULK1 unc-51 like autophagy activating kinase 1 0.517678
ACSS2 acyl-CoA synthetase short-chain family member 2 0.51335
CD1A CD1a molecule 0.512564
MIR31 microRNA 31 0.497266
GH2 growth hormone 2 0.491009
MRS2 MRS2 magnesium transporter 0.491009
SELENBP1 selenium binding protein 1 0.486326
GPX5 glutathione peroxidase 5 0.483596
ASRGL1 asparaginase like 1 0.480091
GPX4 glutathione peroxidase 4 0.480091
HBG2 hemoglobin, gamma G 0.479702
SYNE1 spectrin repeat containing, nuclear envelope 1 0.479312
GPX1 glutathione peroxidase 1 0.468436
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.4634
RSPO1 R-spondin 1 0.458759
ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial 0.450271
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 0.448731
BOC BOC cell adhesion associated, oncogene regulated 0.446807
MUC5B mucin 5B, oligomeric mucus/gel-forming 0.437972
GLB1 galactosidase, beta 1 0.432608
RER1 retention in endoplasmic reticulum sorting receptor 1 0.430695
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.428783
ME1 malic enzyme 1, NADP(+)-dependent, cytosolic 0.428401
MYB v-myb avian myeloblastosis viral oncogene homolog 0.428401
PDCL phosducin-like 0.427254
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 0.425344
ACD adrenocortical dysplasia homolog (mouse) 0.424581
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.423818
CGB7 chorionic gonadotropin, beta polypeptide 7 0.416957
CGB5 chorionic gonadotropin, beta polypeptide 5 0.413532
CD207 CD207 molecule, langerin 0.409731
TYR tyrosinase 0.401007
CGB chorionic gonadotropin, beta polypeptide 0.397222
CGB8 chorionic gonadotropin, beta polypeptide 8 0.396087
KLK11 kallikrein-related peptidase 11 0.393064
KRT4 keratin 4, type II 0.392686
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.385896
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.380627
PDC phosducin 0.377621
GALP galanin-like peptide 0.37687
MGAM maltase-glucoamylase 0.365633
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.344079
KIR3DL1 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 0.328628
FADS1 fatty acid desaturase 1 0.327164
UGCG UDP-glucose ceramide glucosyltransferase 0.325701
GUSB glucuronidase, beta 0.316588
DSG1 desmoglein 1 0.31332
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.298165
COL7A1 collagen, type VII, alpha 1 0.28107
FASN fatty acid synthase 0.275794
LAP3 leucine aminopeptidase 3 0.275444
ALB albumin 0.257572
ADORA2A adenosine A2a receptor 0.24486
GLUL glutamate-ammonia ligase 0.240826
ALLC allantoicase 0.23781
ACR acrosin 0.235167
CFD complement factor D (adipsin) 0.234016
GPC3 glypican 3 0.227186
OCLN occludin 0.226667