structure-specific dna binding Gene Set

Dataset GO Molecular Function Annotations
Category structural or functional annotations
Type molecular function
Description Interacting selectively and non-covalently with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding. (Gene Ontology, GO_0043566)
External Link http://amigo.geneontology.org/amigo/term/GO:0043566
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Genes

242 genes performing the structure-specific dna binding molecular function from the curated GO Molecular Function Annotations dataset.

Symbol Name
ACTB actin, beta
ACTL6A actin-like 6A
AFF3 AF4/FMR2 family, member 3
AIM2 absent in melanoma 2
AKAP8 A kinase (PRKA) anchor protein 8
ALYREF Aly/REF export factor
ANXA1 annexin A1
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
APTX aprataxin
ASCL1 achaete-scute family bHLH transcription factor 1
ATOH1 atonal homolog 1 (Drosophila)
BCL6 B-cell CLL/lymphoma 6
BLM Bloom syndrome, RecQ helicase-like
BRCA2 breast cancer 2, early onset
C10ORF2 chromosome 10 open reading frame 2
CDC45 cell division cycle 45
CDX2 caudal type homeobox 2
CEBPG CCAAT/enhancer binding protein (C/EBP), gamma
CGGBP1 CGG triplet repeat binding protein 1
CHD4 chromodomain helicase DNA binding protein 4
CLOCK clock circadian regulator
CNBP CCHC-type zinc finger, nucleic acid binding protein
CRY1 cryptochrome circadian clock 1
CRY2 cryptochrome circadian clock 2
CTC1 CTS telomere maintenance complex component 1
CTCF CCCTC-binding factor (zinc finger protein)
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36
EGFR epidermal growth factor receptor
EGR1 early growth response 1
ELK1 ELK1, member of ETS oncogene family
ENDOV endonuclease V
EP300 E1A binding protein p300
ERCC1 excision repair cross-complementation group 1
ERCC4 excision repair cross-complementation group 4
ERCC5 excision repair cross-complementation group 5
EXO1 exonuclease 1
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit
FAN1 FANCD2/FANCI-associated nuclease 1
FEN1 flap structure-specific endonuclease 1
FEV FEV (ETS oncogene family)
FOS FBJ murine osteosarcoma viral oncogene homolog
FOSB FBJ murine osteosarcoma viral oncogene homolog B
FOSL2 FOS-like antigen 2
FOXC2 forkhead box C2
FOXD3 forkhead box D3
FOXO3 forkhead box O3
FUBP1 far upstream element (FUSE) binding protein 1
GATA1 GATA binding protein 1 (globin transcription factor 1)
GATAD2B GATA zinc finger domain containing 2B
GRHL1 grainyhead-like 1 (Drosophila)
GRHL2 grainyhead-like 2 (Drosophila)
GRHL3 grainyhead-like 3 (Drosophila)
H1F0 H1 histone family, member 0
H1FOO H1 histone family, member O, oocyte-specific
H2AFY H2A histone family, member Y
H2AFY2 H2A histone family, member Y2
H2AFZ H2A histone family, member Z
H3F3C H3 histone, family 3C
HDAC1 histone deacetylase 1
HDAC2 histone deacetylase 2
HDAC3 histone deacetylase 3
HES2 hes family bHLH transcription factor 2
HES5 hes family bHLH transcription factor 5
HIST1H1A histone cluster 1, H1a
HIST1H1B histone cluster 1, H1b
HIST1H1C histone cluster 1, H1c
HIST1H1D histone cluster 1, H1d
HIST1H1E histone cluster 1, H1e
HLF hepatic leukemia factor
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HMGB2 high mobility group box 2
HMGB3 high mobility group box 3
HMGN1 high mobility group nucleosome binding domain 1
HMGN2 high mobility group nucleosomal binding domain 2
HMGN3 high mobility group nucleosomal binding domain 3
HMGN4 high mobility group nucleosomal binding domain 4
HMGN5 high mobility group nucleosome binding domain 5
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
HNRNPK heterogeneous nuclear ribonucleoprotein K
HSPD1 heat shock 60kDa protein 1 (chaperonin)
IFI16 interferon, gamma-inducible protein 16
IGHMBP2 immunoglobulin mu binding protein 2
INSM1 insulinoma-associated 1
JCHAIN joining chain of multimeric IgA and IgM
JDP2 Jun dimerization protein 2
JUN jun proto-oncogene
JUNB jun B proto-oncogene
JUND jun D proto-oncogene
KIN Kin17 DNA and RNA binding protein
KLF4 Kruppel-like factor 4 (gut)
LONP1 lon peptidase 1, mitochondrial
LRPPRC leucine-rich pentatricopeptide repeat containing
LSM14A LSM14A, SCD6 homolog A (S. cerevisiae)
MBD2 methyl-CpG binding domain protein 2
MBD3 methyl-CpG binding domain protein 3
MCM4 minichromosome maintenance complex component 4
MCM6 minichromosome maintenance complex component 6
MCM7 minichromosome maintenance complex component 7
MECP2 methyl CpG binding protein 2
MED1 mediator complex subunit 1
MEIOB meiosis specific with OB domains
MEN1 multiple endocrine neoplasia I
MLH1 mutL homolog 1
MLH3 mutL homolog 3
MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
MSH2 mutS homolog 2
MSH3 mutS homolog 3
MSH4 mutS homolog 4
MSH5 mutS homolog 5
MSH6 mutS homolog 6
MTA2 metastasis associated 1 family, member 2
MTERF1 mitochondrial transcription termination factor 1
MTERF2 mitochondrial transcription termination factor 2
MTERF3 mitochondrial transcription termination factor 3
MTERF4 mitochondrial transcription termination factor 4
MYOD1 myogenic differentiation 1
MYOG myogenin (myogenic factor 4)
NABP1 nucleic acid binding protein 1
NABP2 nucleic acid binding protein 2
NEIL3 nei endonuclease VIII-like 3 (E. coli)
NEUROD1 neuronal differentiation 1
NEUROG3 neurogenin 3
NFIB nuclear factor I/B
NFIC nuclear factor I/C (CCAAT-binding transcription factor)
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NKAP NFKB activating protein
NKX2-8 NK2 homeobox 8
NOTCH1 notch 1
NR0B1 nuclear receptor subfamily 0, group B, member 1
NR1H4 nuclear receptor subfamily 1, group H, member 4
NR5A1 nuclear receptor subfamily 5, group A, member 1
NTHL1 nth endonuclease III-like 1 (E. coli)
OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1
PARK7 parkinson protein 7
PAX4 paired box 4
PAX6 paired box 6
PCBP1 poly(rC) binding protein 1
PCNA proliferating cell nuclear antigen
PER1 period circadian clock 1
PIF1 PIF1 5'-to-3' DNA helicase
PITX2 paired-like homeodomain 2
PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae)
PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
PNKP polynucleotide kinase 3'-phosphatase
POLR2D polymerase (RNA) II (DNA directed) polypeptide D
POLR2G polymerase (RNA) II (DNA directed) polypeptide G
POT1 protection of telomeres 1
POU3F4 POU class 3 homeobox 4
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PSIP1 PC4 and SFRS1 interacting protein 1
PURA purine-rich element binding protein A
PURB purine-rich element binding protein B
RAD18 RAD18 E3 ubiquitin protein ligase
RAD23A RAD23 homolog A (S. cerevisiae)
RAD23B RAD23 homolog B (S. cerevisiae)
RAD51 RAD51 recombinase
RAD51AP1 RAD51 associated protein 1
RAD51B RAD51 paralog B
RAD51C RAD51 paralog C
RAD51D RAD51 paralog D
RARA retinoic acid receptor, alpha
RBBP4 retinoblastoma binding protein 4
RBMS1 RNA binding motif, single stranded interacting protein 1
RCC1 regulator of chromosome condensation 1
RECQL4 RecQ protein-like 4
RFC1 replication factor C (activator 1) 1, 145kDa
RPA1 replication protein A1, 70kDa
RPA2 replication protein A2, 32kDa
RPA3 replication protein A3, 14kDa
RPA4 replication protein A4, 30kDa
RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
RUVBL2 RuvB-like AAA ATPase 2
RXRA retinoid X receptor, alpha
SAFB scaffold attachment factor B
SATB1 SATB homeobox 1
SETMAR SET domain and mariner transposase fusion gene
SMAD2 SMAD family member 2
SMAD3 SMAD family member 3
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
SP1 Sp1 transcription factor
SP3 Sp3 transcription factor
SPEN spen family transcriptional repressor
SRF serum response factor (c-fos serum response element-binding transcription factor)
SSBP1 single-stranded DNA binding protein 1, mitochondrial
SSBP2 single-stranded DNA binding protein 2
SSBP3 single stranded DNA binding protein 3
SSBP4 single stranded DNA binding protein 4
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT5B signal transducer and activator of transcription 5B
STRA13 stimulated by retinoic acid 13
SUB1 SUB1 homolog (S. cerevisiae)
SWSAP1 SWIM-type zinc finger 7 associated protein 1
TARDBP TAR DNA binding protein
TDG thymine-DNA glycosylase
TDP1 tyrosyl-DNA phosphodiesterase 1
TDP2 tyrosyl-DNA phosphodiesterase 2
TEF thyrotrophic embryonic factor
TEN1 TEN1 CST complex subunit
TERF1 telomeric repeat binding factor (NIMA-interacting) 1
TERF2 telomeric repeat binding factor 2
TET1 tet methylcytosine dioxygenase 1
THRA thyroid hormone receptor, alpha
THRB thyroid hormone receptor, beta
TP63 tumor protein p63
TP73 tumor protein p73
TREX1 three prime repair exonuclease 1
TSN translin
TSNAX translin-associated factor X
UHRF1 ubiquitin-like with PHD and ring finger domains 1
USF1 upstream transcription factor 1
USF2 upstream transcription factor 2, c-fos interacting
VAX1 ventral anterior homeobox 1
VAX2 ventral anterior homeobox 2
WBP11 WW domain binding protein 11
WBP2 WW domain binding protein 2
WRN Werner syndrome, RecQ helicase-like
XPC xeroderma pigmentosum, complementation group C
XRCC2 X-ray repair complementing defective repair in Chinese hamster cells 2
XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6
YBX1 Y box binding protein 1
YBX3 Y box binding protein 3
YY1 YY1 transcription factor
ZBP1 Z-DNA binding protein 1
ZBTB16 zinc finger and BTB domain containing 16
ZEB1 zinc finger E-box binding homeobox 1
ZIC2 Zic family member 2
ZNF148 zinc finger protein 148
ZNF638 zinc finger protein 638