somatic spine Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Spine emanating from the cell soma of a neuron. (Gene Ontology, GO_0097465)
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Genes

23 proteins co-occuring with the somatic spine cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 1.18954
DBN1 drebrin 1 1.17568
OPCML opioid binding protein/cell adhesion molecule-like 0.964069
NTM neurotrimin 0.867666
CALB1 calbindin 1, 28kDa 0.739614
TAC1 tachykinin, precursor 1 0.663368
FAT1 FAT atypical cadherin 1 0.626057
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1 0.621379
USP9X ubiquitin specific peptidase 9, X-linked 0.599381
RAPSN receptor-associated protein of the synapse 0.530028
HDC histidine decarboxylase 0.498231
CALCA calcitonin-related polypeptide alpha 0.458803
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 0.393936
CABIN1 calcineurin binding protein 1 0.388909
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) 0.337751
INA internexin neuronal intermediate filament protein, alpha 0.332095
NPY neuropeptide Y 0.29623
NPS neuropeptide S 0.292527
TH tyrosine hydroxylase 0.219265
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) 0.21716
GRIA1 glutamate receptor, ionotropic, AMPA 1 0.210894
PDYN prodynorphin 0.209169
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 0.161068