somatic embryo Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description An organized embryonic structure morphologically similar to a zygotic embryo but initiated from somatic non-zygotic cells. Under in vitro conditions, somatic embryos go through developmental processes similar to embryos of zygotic origin. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001138)
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Genes

115 proteins co-occuring with the tissue somatic embryo in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
CLEC1A C-type lectin domain family 1, member A 1.91642
KIN Kin17 DNA and RNA binding protein 1.84761
DGAT2L6 diacylglycerol O-acyltransferase 2-like 6 1.67805
ABI3 ABI family, member 3 1.67656
GUSB glucuronidase, beta 1.65807
DNAJC22 DnaJ (Hsp40) homolog, subfamily C, member 22 1.5893
AGPS alkylglycerone phosphate synthase 1.35767
CSTL1 cystatin-like 1 1.34406
CSN1S1 casein alpha s1 1.26844
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 1.14298
CMC2 C-x(9)-C motif containing 2 1.09253
ASNS asparagine synthetase (glutamine-hydrolyzing) 1.09031
HMX2 H6 family homeobox 2 1.07132
MAP2K4 mitogen-activated protein kinase kinase 4 0.994554
DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 0.970253
SNRK SNF related kinase 0.947378
LCMT2 leucine carboxyl methyltransferase 2 0.905404
CHURC1 churchill domain containing 1 0.891374
IL13RA1 interleukin 13 receptor, alpha 1 0.884591
FANCD2 Fanconi anemia, complementation group D2 0.871905
ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide 0.860521
PGD phosphogluconate dehydrogenase 0.849165
MAFF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F 0.83993
NSL1 NSL1, MIS12 kinetochore complex component 0.811056
LRP4 low density lipoprotein receptor-related protein 4 0.800208
LDLRAD4 low density lipoprotein receptor class A domain containing 4 0.792709
ATN1 atrophin 1 0.777325
RAB25 RAB25, member RAS oncogene family 0.765711
POLD1 polymerase (DNA directed), delta 1, catalytic subunit 0.758673
NFYB nuclear transcription factor Y, beta 0.74009
MNX1 motor neuron and pancreas homeobox 1 0.728975
DCXR dicarbonyl/L-xylulose reductase 0.719113
SPAG11B sperm associated antigen 11B 0.696989
HMX1 H6 family homeobox 1 0.690451
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.673321
MUC5B mucin 5B, oligomeric mucus/gel-forming 0.66925
KCNA1 potassium channel, voltage gated shaker related subfamily A, member 1 0.666809
ADGRL1 adhesion G protein-coupled receptor L1 0.662336
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.659491
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.654212
H3F3B H3 histone, family 3B (H3.3B) 0.649344
H3F3A H3 histone, family 3A 0.649344
ALDOC aldolase C, fructose-bisphosphate 0.647316
RAN RAN, member RAS oncogene family 0.640428
ALDOB aldolase B, fructose-bisphosphate 0.63719
KCNA6 potassium channel, voltage gated shaker related subfamily A, member 6 0.62991
PPCS phosphopantothenoylcysteine synthetase 0.626273
ELF5 E74-like factor 5 (ets domain transcription factor) 0.625061
PON3 paraoxonase 3 0.6182
PDP1 pyruvate dehyrogenase phosphatase catalytic subunit 1 0.61578
UCK1 uridine-cytidine kinase 1 0.612555
UCKL1 uridine-cytidine kinase 1-like 1 0.610541
SIM1 single-minded family bHLH transcription factor 1 0.606916
NFYA nuclear transcription factor Y, alpha 0.605306
SLC34A1 solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 0.603295
EHF ets homologous factor 0.598469
UCK2 uridine-cytidine kinase 2 0.578416
ETFA electron-transfer-flavoprotein, alpha polypeptide 0.577615
PC pyruvate carboxylase 0.574416
ALDOA aldolase A, fructose-bisphosphate 0.573217
BIRC7 baculoviral IAP repeat containing 7 0.556865
DGAT2 diacylglycerol O-acyltransferase 2 0.551695
NPTN neuroplastin 0.539
LXN latexin 0.538604
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 0.537416
LTB lymphotoxin beta (TNF superfamily, member 3) 0.532274
HHAT hedgehog acyltransferase 0.519647
ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 0.505102
NMS neuromedin S 0.505102
HSPB8 heat shock 22kDa protein 8 0.503926
DSE dermatan sulfate epimerase 0.495701
UGP2 UDP-glucose pyrophosphorylase 2 0.489447
PON2 paraoxonase 2 0.482817
MYB v-myb avian myeloblastosis viral oncogene homolog 0.482428
ACSL1 acyl-CoA synthetase long-chain family member 1 0.476201
NOVA2 neuro-oncological ventral antigen 2 0.472704
APOLD1 apolipoprotein L domain containing 1 0.452584
KLK15 kallikrein-related peptidase 15 0.443731
PGR progesterone receptor 0.43989
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.43414
RAB3D RAB3D, member RAS oncogene family 0.415434
GZMM granzyme M (lymphocyte met-ase 1) 0.412771
GREM2 gremlin 2, DAN family BMP antagonist 0.408592
DGAT1 diacylglycerol O-acyltransferase 1 0.408212
SCP2 sterol carrier protein 2 0.3976
PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.396844
KCNA4 potassium channel, voltage gated shaker related subfamily A, member 4 0.392309
OSTC oligosaccharyltransferase complex subunit (non-catalytic) 0.369373
PRODH proline dehydrogenase (oxidase) 1 0.366007
MARS methionyl-tRNA synthetase 0.364513
PGM1 phosphoglucomutase 1 0.364139
PIWIL1 piwi-like RNA-mediated gene silencing 1 0.363766
CST4 cystatin S 0.352227
MIR17 microRNA 17 0.350372
UBE2S ubiquitin-conjugating enzyme E2S 0.347038
TPT1 tumor protein, translationally-controlled 1 0.326067
TPI1 triosephosphate isomerase 1 0.325335
PER3 period circadian clock 3 0.307167
ECE1 endothelin converting enzyme 1 0.303559
GLUL glutamate-ammonia ligase 0.288158
SOD2 superoxide dismutase 2, mitochondrial 0.284607
UBE2K ubiquitin-conjugating enzyme E2K 0.281776
APRT adenine phosphoribosyltransferase 0.280012
ZKSCAN7 zinc finger with KRAB and SCAN domains 7 0.273346
ADK adenosine kinase 0.267446
SPTB spectrin, beta, erythrocytic 0.25858
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.257237
PNMA2 paraneoplastic Ma antigen 2 0.253578
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.250953
ODC1 ornithine decarboxylase 1 0.247079
FUS FUS RNA binding protein 0.244232
SERPINB6 serpin peptidase inhibitor, clade B (ovalbumin), member 6 0.226411
DLK1 delta-like 1 homolog (Drosophila) 0.216528
SPTA1 spectrin, alpha, erythrocytic 1 0.216528
GSR glutathione reductase 0.215534