small molecule biosynthetic process Gene Set

Dataset GO Biological Process Annotations
Category structural or functional annotations
Type biological process
Description The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. (Gene Ontology, GO_0044283)
External Link http://amigo.geneontology.org/amigo/term/GO:0044283
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Genes

365 genes participating in the small molecule biosynthetic process biological process from the curated GO Biological Process Annotations dataset.

Symbol Name
ABCB11 ATP-binding cassette, sub-family B (MDR/TAP), member 11
ACAA2 acetyl-CoA acyltransferase 2
ACACA acetyl-CoA carboxylase alpha
ACACB acetyl-CoA carboxylase beta
ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain
ACAT1 acetyl-CoA acetyltransferase 1
ACER1 alkaline ceramidase 1
ACER2 alkaline ceramidase 2
ACER3 alkaline ceramidase 3
ACHE acetylcholinesterase (Yt blood group)
ACOT7 acyl-CoA thioesterase 7
ACOT8 acyl-CoA thioesterase 8
ACOX2 acyl-CoA oxidase 2, branched chain
ACSF3 acyl-CoA synthetase family member 3
ACSL3 acyl-CoA synthetase long-chain family member 3
ACSM1 acyl-CoA synthetase medium-chain family member 1
ACSM3 acyl-CoA synthetase medium-chain family member 3
ACSS1 acyl-CoA synthetase short-chain family member 1
ACSS2 acyl-CoA synthetase short-chain family member 2
ADCK3 aarF domain containing kinase 3
ADI1 acireductone dioxygenase 1
ADM adrenomedullin
AGMO alkylglycerol monooxygenase
AGPAT6 1-acylglycerol-3-phosphate O-acyltransferase 6
AGXT alanine-glyoxylate aminotransferase
AGXT2 alanine--glyoxylate aminotransferase 2
AHCY adenosylhomocysteinase
AKR1A1 aldo-keto reductase family 1, member A1 (aldehyde reductase)
AKR1C3 aldo-keto reductase family 1, member C3
AKR1C4 aldo-keto reductase family 1, member C4
AKR1D1 aldo-keto reductase family 1, member D1
ALDH18A1 aldehyde dehydrogenase 18 family, member A1
ALDH1A2 aldehyde dehydrogenase 1 family, member A2
ALDH1A3 aldehyde dehydrogenase 1 family, member A3
ALDH4A1 aldehyde dehydrogenase 4 family, member A1
ALDH8A1 aldehyde dehydrogenase 8 family, member A1
ALDH9A1 aldehyde dehydrogenase 9 family, member A1
ALOX12 arachidonate 12-lipoxygenase
ALOX12B arachidonate 12-lipoxygenase, 12R type
ALOX15 arachidonate 15-lipoxygenase
ALOX15B arachidonate 15-lipoxygenase, type B
ALOX5 arachidonate 5-lipoxygenase
ALOX5AP arachidonate 5-lipoxygenase-activating protein
ALOXE3 arachidonate lipoxygenase 3
AMACR alpha-methylacyl-CoA racemase
APIP APAF1 interacting protein
APOA1 apolipoprotein A-I
APOA2 apolipoprotein A-II
APOA5 apolipoprotein A-V
ASL argininosuccinate lyase
ASNS asparagine synthetase (glutamine-hydrolyzing)
ASNSD1 asparagine synthetase domain containing 1
ASS1 argininosuccinate synthase 1
ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
BAAT bile acid CoA:amino acid N-acyltransferase
BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
BCAN brevican
BCAT1 branched chain amino-acid transaminase 1, cytosolic
BCAT2 branched chain amino-acid transaminase 2, mitochondrial
BCO1 beta-carotene oxygenase 1
BDH1 3-hydroxybutyrate dehydrogenase, type 1
BGN biglycan
BHMT betaine--homocysteine S-methyltransferase
BHMT2 betaine--homocysteine S-methyltransferase 2
BRCA1 breast cancer 1, early onset
C14ORF1 chromosome 14 open reading frame 1
C9ORF3 chromosome 9 open reading frame 3
CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit
CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
CARNS1 carnosine synthase 1
CBR4 carbonyl reductase 4
CCBL1 cysteine conjugate-beta lyase, cytoplasmic
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
CDO1 cysteine dioxygenase type 1
CDS1 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1
CEPT1 choline/ethanolamine phosphotransferase 1
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CH25H cholesterol 25-hydroxylase
CHAT choline O-acetyltransferase
CHKA choline kinase alpha
CHKB choline kinase beta
CHPT1 choline phosphotransferase 1
CHST12 carbohydrate (chondroitin 4) sulfotransferase 12
CHST14 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14
CNBP CCHC-type zinc finger, nucleic acid binding protein
COQ2 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
COQ3 coenzyme Q3 methyltransferase
COQ4 coenzyme Q4
COQ5 coenzyme Q5 homolog, methyltransferase (S. cerevisiae)
COQ6 coenzyme Q6 monooxygenase
COQ7 coenzyme Q7 homolog, ubiquinone (yeast)
COQ9 coenzyme Q9
CPS1 carbamoyl-phosphate synthase 1, mitochondrial
CSPG4 chondroitin sulfate proteoglycan 4
CSPG5 chondroitin sulfate proteoglycan 5 (neuroglycan C)
CTH cystathionine gamma-lyase
CYB5R1 cytochrome b5 reductase 1
CYB5R2 cytochrome b5 reductase 2
CYB5R3 cytochrome b5 reductase 3
CYP11A1 cytochrome P450, family 11, subfamily A, polypeptide 1
CYP11B1 cytochrome P450, family 11, subfamily B, polypeptide 1
CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1
CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1
CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1
CYP2R1 cytochrome P450, family 2, subfamily R, polypeptide 1
CYP39A1 cytochrome P450, family 39, subfamily A, polypeptide 1
CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4
CYP46A1 cytochrome P450, family 46, subfamily A, polypeptide 1
CYP4F12 cytochrome P450, family 4, subfamily F, polypeptide 12
CYP4F2 cytochrome P450, family 4, subfamily F, polypeptide 2
CYP51A1 cytochrome P450, family 51, subfamily A, polypeptide 1
CYP7A1 cytochrome P450, family 7, subfamily A, polypeptide 1
CYP7B1 cytochrome P450, family 7, subfamily B, polypeptide 1
CYP8B1 cytochrome P450, family 8, subfamily B, polypeptide 1
DCN decorin
DECR2 2,4-dienoyl CoA reductase 2, peroxisomal
DEGS1 delta(4)-desaturase, sphingolipid 1
DHCR24 24-dehydrocholesterol reductase
DHCR7 7-dehydrocholesterol reductase
DHFR dihydrofolate reductase
DHFRL1 dihydrofolate reductase-like 1
DHRS9 dehydrogenase/reductase (SDR family) member 9
DPAGT1 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
DPYD dihydropyrimidine dehydrogenase
DSE dermatan sulfate epimerase
DSEL dermatan sulfate epimerase-like
EBP emopamil binding protein (sterol isomerase)
EDN1 endothelin 1
EDN2 endothelin 2
EIF2B1 eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa
EIF2B2 eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa
EIF2B4 eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa
ELOVL1 ELOVL fatty acid elongase 1
ELOVL2 ELOVL fatty acid elongase 2
ELOVL3 ELOVL fatty acid elongase 3
ELOVL4 ELOVL fatty acid elongase 4
ELOVL5 ELOVL fatty acid elongase 5
ELOVL6 ELOVL fatty acid elongase 6
ELOVL7 ELOVL fatty acid elongase 7
ENOPH1 enolase-phosphatase 1
FA2H fatty acid 2-hydroxylase
FABP5 fatty acid binding protein 5 (psoriasis-associated)
FADS1 fatty acid desaturase 1
FADS2 fatty acid desaturase 2
FADS3 fatty acid desaturase 3
FADS6 fatty acid desaturase 6
FAM213B family with sequence similarity 213, member B
FASN fatty acid synthase
FAXDC2 fatty acid hydroxylase domain containing 2
FCER1A Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide
FDFT1 farnesyl-diphosphate farnesyltransferase 1
FDPS farnesyl diphosphate synthase
FDXR ferredoxin reductase
FGF2 fibroblast growth factor 2 (basic)
FPGS folylpolyglutamate synthase
FSHB follicle stimulating hormone, beta polypeptide
G6PD glucose-6-phosphate dehydrogenase
GAD1 glutamate decarboxylase 1 (brain, 67kDa)
GAMT guanidinoacetate N-methyltransferase
GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
GATM glycine amidinotransferase (L-arginine:glycine amidinotransferase)
GBA glucosidase, beta, acid
GCH1 GTP cyclohydrolase 1
GGPS1 geranylgeranyl diphosphate synthase 1
GGT1 gamma-glutamyltransferase 1
GGT5 gamma-glutamyltransferase 5
GGT6 gamma-glutamyltransferase 6
GGT7 gamma-glutamyltransferase 7
GGTLC1 gamma-glutamyltransferase light chain 1
GGTLC2 gamma-glutamyltransferase light chain 2
GLS glutaminase
GLS2 glutaminase 2 (liver, mitochondrial)
GLUD1 glutamate dehydrogenase 1
GLUD2 glutamate dehydrogenase 2
GLUL glutamate-ammonia ligase
GOT1 glutamic-oxaloacetic transaminase 1, soluble
GOT2 glutamic-oxaloacetic transaminase 2, mitochondrial
GPI glucose-6-phosphate isomerase
GPT glutamic-pyruvate transaminase (alanine aminotransferase)
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2
HAAO 3-hydroxyanthranilate 3,4-dioxygenase
HACD1 3-hydroxyacyl-CoA dehydratase 1
HACD2 3-hydroxyacyl-CoA dehydratase 2
HACD3 3-hydroxyacyl-CoA dehydratase 3
HACD4 3-hydroxyacyl-CoA dehydratase 4
HMGCL 3-hydroxymethyl-3-methylglutaryl-CoA lyase
HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial)
HOGA1 4-hydroxy-2-oxoglutarate aldolase 1
HSD17B1 hydroxysteroid (17-beta) dehydrogenase 1
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12
HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3
HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4
HSD17B7 hydroxysteroid (17-beta) dehydrogenase 7
HSD17B8 hydroxysteroid (17-beta) dehydrogenase 8
HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
HTT huntingtin
IDI1 isopentenyl-diphosphate delta isomerase 1
IDI2 isopentenyl-diphosphate delta isomerase 2
IDO1 indoleamine 2,3-dioxygenase 1
IMPA1 inositol(myo)-1(or 4)-monophosphatase 1
IMPA2 inositol(myo)-1(or 4)-monophosphatase 2
IMPAD1 inositol monophosphatase domain containing 1
INSIG1 insulin induced gene 1
INSIG2 insulin induced gene 2
IP6K3 inositol hexakisphosphate kinase 3
IPMK inositol polyphosphate multikinase
ISYNA1 inositol-3-phosphate synthase 1
KDM3A lysine (K)-specific demethylase 3A
KMO kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
KYNU kynureninase
LBR lamin B receptor
LCAT lecithin-cholesterol acyltransferase
LDHC lactate dehydrogenase C
LEP leptin
LGSN lengsin, lens protein with glutamine synthetase domain
LHB luteinizing hormone beta polypeptide
LIAS lipoic acid synthetase
LIPC lipase, hepatic
LIPT2 lipoyl(octanoyl) transferase 2 (putative)
LPCAT2 lysophosphatidylcholine acyltransferase 2
LPIN1 lipin 1
LPIN2 lipin 2
LPIN3 lipin 3
LPL lipoprotein lipase
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)
LTA4H leukotriene A4 hydrolase
LTC4S leukotriene C4 synthase
MCAT malonyl CoA:ACP acyltransferase (mitochondrial)
MECR mitochondrial trans-2-enoyl-CoA reductase
MGLL monoglyceride lipase
MGST2 microsomal glutathione S-transferase 2
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MLYCD malonyl-CoA decarboxylase
MMAA methylmalonic aciduria (cobalamin deficiency) cblA type
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type
MMACHC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria
MPO myeloperoxidase
MRI1 methylthioribose-1-phosphate isomerase 1
MSMO1 methylsterol monooxygenase 1
MTAP methylthioadenosine phosphorylase
MTHFD1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase
MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase
MVD mevalonate (diphospho) decarboxylase
MVK mevalonate kinase
MYO5A myosin VA (heavy chain 12, myoxin)
NAGS N-acetylglutamate synthase
NANP N-acetylneuraminic acid phosphatase
NCAN neurocan
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa
NOXRED1 NADP-dependent oxidoreductase domain containing 1
NPC1L1 NPC1-like 1
NSDHL NAD(P) dependent steroid dehydrogenase-like
OAT ornithine aminotransferase
OLAH oleoyl-ACP hydrolase
OTC ornithine carbamoyltransferase
OXSM 3-oxoacyl-ACP synthase, mitochondrial
PADI1 peptidyl arginine deiminase, type I
PADI2 peptidyl arginine deiminase, type II
PADI3 peptidyl arginine deiminase, type III
PADI4 peptidyl arginine deiminase, type IV
PADI6 peptidyl arginine deiminase, type VI
PAH phenylalanine hydroxylase
PARK7 parkinson protein 7
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble)
PCYT1A phosphate cytidylyltransferase 1, choline, alpha
PCYT1B phosphate cytidylyltransferase 1, choline, beta
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1
PDSS2 prenyl (decaprenyl) diphosphate synthase, subunit 2
PECR peroxisomal trans-2-enoyl-CoA reductase
PEMT phosphatidylethanolamine N-methyltransferase
PER2 period circadian clock 2
PEX2 peroxisomal biogenesis factor 2
PHGDH phosphoglycerate dehydrogenase
PHOSPHO1 phosphatase, orphan 1
PKLR pyruvate kinase, liver and RBC
PLA2G1B phospholipase A2, group IB (pancreas)
PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent)
PLA2G4F phospholipase A2, group IVF
PLA2G5 phospholipase A2, group V
PLCG2 phospholipase C, gamma 2 (phosphatidylinositol-specific)
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
PLP1 proteolipid protein 1
PLTP phospholipid transfer protein
PMVK phosphomevalonate kinase
PNP purine nucleoside phosphorylase
PNPLA8 patatin-like phospholipase domain containing 8
PNPO pyridoxamine 5'-phosphate oxidase
PRG3 proteoglycan 3
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit
PRKAB1 protein kinase, AMP-activated, beta 1 non-catalytic subunit
PRKAB2 protein kinase, AMP-activated, beta 2 non-catalytic subunit
PRKAG1 protein kinase, AMP-activated, gamma 1 non-catalytic subunit
PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit
PRKAG3 protein kinase, AMP-activated, gamma 3 non-catalytic subunit
PRPS1 phosphoribosyl pyrophosphate synthetase 1
PSAT1 phosphoserine aminotransferase 1
PSPH phosphoserine phosphatase
PTAFR platelet-activating factor receptor
PTGDS prostaglandin D2 synthase 21kDa (brain)
PTGES prostaglandin E synthase
PTGES2 prostaglandin E synthase 2
PTGES3 prostaglandin E synthase 3 (cytosolic)
PTGIS prostaglandin I2 (prostacyclin) synthase
PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PYCR1 pyrroline-5-carboxylate reductase 1
PYCR2 pyrroline-5-carboxylate reductase family, member 2
PYCRL pyrroline-5-carboxylate reductase-like
QKI QKI, KH domain containing, RNA binding
RDH10 retinol dehydrogenase 10 (all-trans)
RFK riboflavin kinase
RGN regucalcin
RNPEP arginyl aminopeptidase (aminopeptidase B)
RNPEPL1 arginyl aminopeptidase (aminopeptidase B)-like 1
SAMD8 sterile alpha motif domain containing 8
SC5D sterol-C5-desaturase
SCD stearoyl-CoA desaturase (delta-9-desaturase)
SCD5 stearoyl-CoA desaturase 5
SCP2 sterol carrier protein 2
SDS serine dehydratase
SEPHS2 selenophosphate synthetase 2
SGMS1 sphingomyelin synthase 1
SGMS2 sphingomyelin synthase 2
SHMT1 serine hydroxymethyltransferase 1 (soluble)
SHMT2 serine hydroxymethyltransferase 2 (mitochondrial)
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1
SLC27A2 solute carrier family 27 (fatty acid transporter), member 2
SLC27A5 solute carrier family 27 (fatty acid transporter), member 5
SLC35D1 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1
SLC44A1 solute carrier family 44 (choline transporter), member 1
SLC44A2 solute carrier family 44 (choline transporter), member 2
SLC44A3 solute carrier family 44, member 3
SLC44A4 solute carrier family 44, member 4
SLC44A5 solute carrier family 44, member 5
SPTLC1 serine palmitoyltransferase, long chain base subunit 1
SPTLC2 serine palmitoyltransferase, long chain base subunit 2
SQLE squalene epoxidase
SRR serine racemase
STAR steroidogenic acute regulatory protein
STARD3 StAR-related lipid transfer (START) domain containing 3
SYK spleen tyrosine kinase
TECR trans-2,3-enoyl-CoA reductase
THNSL1 threonine synthase-like 1 (S. cerevisiae)
THNSL2 threonine synthase-like 2 (S. cerevisiae)
TM7SF2 transmembrane 7 superfamily member 2
TMLHE trimethyllysine hydroxylase, epsilon
UBIAD1 UbiA prenyltransferase domain containing 1
UGDH UDP-glucose 6-dehydrogenase
UGP2 UDP-glucose pyrophosphorylase 2
UPB1 ureidopropionase, beta
UROS uroporphyrinogen III synthase
UST uronyl-2-sulfotransferase
VCAN versican
XBP1 X-box binding protein 1