short-chain collagen trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any collagen trimer that does not form fibrils and that is relatively short compared to the collagen trimers that do form fibrils. (Gene Ontology, GO_0005598)
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Genes

112 proteins co-occuring with the short-chain collagen trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
COL10A1 collagen, type X, alpha 1 2.10638
ACAN aggrecan 1.78649
SOX9 SRY (sex determining region Y)-box 9 1.66901
IHH indian hedgehog 1.64733
COL8A1 collagen, type VIII, alpha 1 1.32221
COL8A2 collagen, type VIII, alpha 2 1.23348
COL2A1 collagen, type II, alpha 1 1.13625
LRRC17 leucine rich repeat containing 17 1.13369
MMP13 matrix metallopeptidase 13 1.11786
RUNX2 runt-related transcription factor 2 1.08272
COL13A1 collagen, type XIII, alpha 1 1.02829
PTHLH parathyroid hormone-like hormone 0.965512
OTOL1 otolin 1 0.956874
ITM2A integral membrane protein 2A 0.949236
ALPL alkaline phosphatase, liver/bone/kidney 0.918579
ALPPL2 alkaline phosphatase, placental-like 2 0.899036
ALPP alkaline phosphatase, placental 0.898109
SPP1 secreted phosphoprotein 1 0.852042
NPR2 natriuretic peptide receptor 2 0.835515
BMP2 bone morphogenetic protein 2 0.79927
BMP6 bone morphogenetic protein 6 0.785071
SOX5 SRY (sex determining region Y)-box 5 0.774101
ITM2C integral membrane protein 2C 0.760887
FGFR3 fibroblast growth factor receptor 3 0.752263
SOX6 SRY (sex determining region Y)-box 6 0.734666
BGLAP bone gamma-carboxyglutamate (gla) protein 0.730628
PTH parathyroid hormone 0.72258
COMP cartilage oligomeric matrix protein 0.719906
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 0.652159
C1QTNF5 C1q and tumor necrosis factor related protein 5 0.631598
TGFB3 transforming growth factor, beta 3 0.627761
CHST6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 0.608663
PRG4 proteoglycan 4 0.575078
CILP cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 0.560114
C1QC complement component 1, q subcomponent, C chain 0.544
COL1A1 collagen, type I, alpha 1 0.541117
TGFB1 transforming growth factor, beta 1 0.532078
CD44 CD44 molecule (Indian blood group) 0.530847
SRY sex determining region Y 0.52225
MATN1 matrilin 1, cartilage matrix protein 0.520206
MUSTN1 musculoskeletal, embryonic nuclear protein 1 0.503099
ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 0.485289
FRK fyn-related Src family tyrosine kinase 0.473215
GSPT1 G1 to S phase transition 1 0.472813
BMP7 bone morphogenetic protein 7 0.438146
PTH1R parathyroid hormone 1 receptor 0.437356
ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 0.423174
MFRP membrane frizzled-related protein 0.41143
FOXA3 forkhead box A3 0.407919
FGF23 fibroblast growth factor 23 0.405193
TNFAIP6 tumor necrosis factor, alpha-induced protein 6 0.400139
IBSP integrin-binding sialoprotein 0.369684
NOG noggin 0.366623
BGN biglycan 0.366623
MIA melanoma inhibitory activity 0.365477
LECT1 leukocyte cell derived chemotaxin 1 0.363567
EXT2 exostosin glycosyltransferase 2 0.361277
NPPC natriuretic peptide C 0.358609
PLA2G5 phospholipase A2, group V 0.354802
THY1 Thy-1 cell surface antigen 0.354042
FMOD fibromodulin 0.352522
MMP1 matrix metallopeptidase 1 0.331719
PTCH1 patched 1 0.331342
TECR trans-2,3-enoyl-CoA reductase 0.316334
MEF2C myocyte enhancer factor 2C 0.311851
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 0.308867
HYAL1 hyaluronoglucosaminidase 1 0.308122
GDF5 growth differentiation factor 5 0.304771
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.294748
COL5A2 collagen, type V, alpha 2 0.288091
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 0.280349
TNC tenascin C 0.279612
CBLN1 cerebellin 1 precursor 0.26166
FZD7 frizzled class receptor 7 0.260202
NID2 nidogen 2 (osteonidogen) 0.258745
KRT12 keratin 12, type I 0.256197
BMP4 bone morphogenetic protein 4 0.243158
KLF10 Kruppel-like factor 10 0.242797
DCN decorin 0.240996
ITM2B integral membrane protein 2B 0.228464
MMP3 matrix metallopeptidase 3 0.220673
FGF2 fibroblast growth factor 2 (basic) 0.218914
MATN3 matrilin 3 0.216111
SP3 Sp3 transcription factor 0.215761
EXT1 exostosin glycosyltransferase 1 0.215063
SCIN scinderin 0.210203
GLI1 GLI family zinc finger 1 0.208137
MC3R melanocortin 3 receptor 0.206766
FN1 fibronectin 1 0.206423
ADCY9 adenylate cyclase 9 0.206423
WNT7A wingless-type MMTV integration site family, member 7A 0.203022
CNTN1 contactin 1 0.198325
CPN1 carboxypeptidase N, polypeptide 1 0.19307
IGF1 insulin-like growth factor 1 (somatomedin C) 0.183328
KCNAB2 potassium channel, voltage gated subfamily A regulatory beta subunit 2 0.17687
FRZB frizzled-related protein 0.174361
TGFB2 transforming growth factor, beta 2 0.165
ADAM12 ADAM metallopeptidase domain 12 0.162546
DDR2 discoidin domain receptor tyrosine kinase 2 0.162546
KRT3 keratin 3, type II 0.161275
ITGA1 integrin, alpha 1 0.158692
DPT dermatopontin 0.157039
TGFBI transforming growth factor, beta-induced, 68kDa 0.141523
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 0.138429
FGF7 fibroblast growth factor 7 0.137694
IGFBP5 insulin-like growth factor binding protein 5 0.13674
NID1 nidogen 1 0.136013
TJP1 tight junction protein 1 0.135743
SMAD7 SMAD family member 7 0.135017
CRYAB crystallin, alpha B 0.134195
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.133289
LOX lysyl oxidase 0.133233