sheet-forming collagen trimer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description sheet-forming collagen trimer (Gene Ontology, GO_0030935)
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Genes

228 proteins co-occuring with the sheet-forming collagen trimer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
FN1 fibronectin 1 2.53541
NID1 nidogen 1 1.86693
COL10A1 collagen, type X, alpha 1 1.59372
TNC tenascin C 1.4576
MMP2 matrix metallopeptidase 2 1.38794
COL4A1 collagen, type IV, alpha 1 1.37962
TGFB1 transforming growth factor, beta 1 1.36637
ACAN aggrecan 1.35978
CD44 CD44 molecule (Indian blood group) 1.3325
SEBOX SEBOX homeobox 1.33033
MMP9 matrix metallopeptidase 9 1.23661
SOX9 SRY (sex determining region Y)-box 9 1.2148
IHH indian hedgehog 1.19571
COL4A3 collagen, type IV, alpha 3 (Goodpasture antigen) 1.19365
COL4A5 collagen, type IV, alpha 5 1.18748
COL4A4 collagen, type IV, alpha 4 1.09086
COL4A2 collagen, type IV, alpha 2 1.03829
COL8A2 collagen, type VIII, alpha 2 1.0238
TIMP1 TIMP metallopeptidase inhibitor 1 1.0238
COL8A1 collagen, type VIII, alpha 1 1.01189
NID2 nidogen 2 (osteonidogen) 0.919046
TIMP2 TIMP metallopeptidase inhibitor 2 0.878251
LSAMP limbic system-associated membrane protein 0.854798
LAMB2 laminin, beta 2 (laminin S) 0.85388
CD34 CD34 molecule 0.8089
ZNF627 zinc finger protein 627 0.784156
CTGF connective tissue growth factor 0.780497
MMP13 matrix metallopeptidase 13 0.764072
HIST1H2BN histone cluster 1, H2bn 0.752716
COL2A1 collagen, type II, alpha 1 0.746833
ALPL alkaline phosphatase, liver/bone/kidney 0.744574
LRRC17 leucine rich repeat containing 17 0.744122
ALPPL2 alkaline phosphatase, placental-like 2 0.731973
ALPP alkaline phosphatase, placental 0.731076
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.729284
DCN decorin 0.728836
F8 coagulation factor VIII, procoagulant component 0.727941
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.719906
SPP1 secreted phosphoprotein 1 0.711465
RUNX2 runt-related transcription factor 2 0.699543
VWF von Willebrand factor 0.694709
UBL7 ubiquitin-like 7 0.689888
MMP1 matrix metallopeptidase 1 0.657326
COL13A1 collagen, type XIII, alpha 1 0.653019
SDC2 syndecan 2 0.644429
PLG plasminogen 0.638005
ALB albumin 0.633732
VCAN versican 0.628187
FGF2 fibroblast growth factor 2 (basic) 0.628187
THY1 Thy-1 cell surface antigen 0.625206
ITGA6 integrin, alpha 6 0.622654
PTHLH parathyroid hormone-like hormone 0.598117
OTOL1 otolin 1 0.590553
PCNA proliferating cell nuclear antigen 0.587618
ITM2A integral membrane protein 2A 0.584268
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.578833
BMP7 bone morphogenetic protein 7 0.564677
COL4A6 collagen, type IV, alpha 6 0.562187
UBIAD1 UbiA prenyltransferase domain containing 1 0.554732
KRT15 keratin 15, type I 0.551012
BGLAP bone gamma-carboxyglutamate (gla) protein 0.54771
ACE angiotensin I converting enzyme 0.54771
MMP3 matrix metallopeptidase 3 0.546472
PLAT plasminogen activator, tissue 0.530028
SERPINH1 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) 0.529618
VSX1 visual system homeobox 1 0.527979
BMP6 bone morphogenetic protein 6 0.52716
FGF1 fibroblast growth factor 1 (acidic) 0.525522
B3GALT6 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 0.521432
HBA1 hemoglobin, alpha 1 0.512862
BGN biglycan 0.509197
HBA2 hemoglobin, alpha 2 0.506757
B3GAT1 beta-1,3-glucuronyltransferase 1 0.50107
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.500664
BMP2 bone morphogenetic protein 2 0.492157
ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 0.490539
NOV nephroblastoma overexpressed 0.489327
FANCB Fanconi anemia, complementation group B 0.488923
NPR2 natriuretic peptide receptor 2 0.483273
CD68 CD68 molecule 0.483273
COL14A1 collagen, type XIV, alpha 1 0.481258
VEGFA vascular endothelial growth factor A 0.463198
PLAU plasminogen activator, urokinase 0.456809
PTH parathyroid hormone 0.448848
TINAGL1 tubulointerstitial nephritis antigen-like 1 0.447656
EFNA3 ephrin-A3 0.44052
SOX5 SRY (sex determining region Y)-box 5 0.430253
IGBP1 immunoglobulin (CD79A) binding protein 1 0.427104
FBXL20 F-box and leucine-rich repeat protein 20 0.426318
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 0.423567
IGF1 insulin-like growth factor 1 (somatomedin C) 0.421997
ITM2C integral membrane protein 2C 0.418468
FGF7 fibroblast growth factor 7 0.415728
FGFR3 fibroblast growth factor receptor 3 0.41143
SOX6 SRY (sex determining region Y)-box 6 0.395873
LAMA2 laminin, alpha 2 0.394323
TGFB3 transforming growth factor, beta 3 0.390455
ITGA1 integrin, alpha 1 0.389296
COMP cartilage oligomeric matrix protein 0.383124
COL1A1 collagen, type I, alpha 1 0.377738
IVL involucrin 0.374283
SPARC secreted protein, acidic, cysteine-rich (osteonectin) 0.371982
THBS1 thrombospondin 1 0.366623
EDA ectodysplasin A 0.363185
FMOD fibromodulin 0.360896
VCAM1 vascular cell adhesion molecule 1 0.359752
SMAD2 SMAD family member 2 0.344935
KDR kinase insert domain receptor 0.334733
LAMC2 laminin, gamma 2 0.334733
IL6 interleukin 6 0.333602
VCL vinculin 0.330213
EMCN endomucin 0.327205
TJP1 tight junction protein 1 0.326453
ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 0.324576
BMP4 bone morphogenetic protein 4 0.323075
KRT12 keratin 12, type I 0.317082
CLDN1 claudin 1 0.312971
CLDN7 claudin 7 0.308867
C1QTNF5 C1q and tumor necrosis factor related protein 5 0.30626
B3GALTL beta 1,3-galactosyltransferase-like 0.304027
MYOF myoferlin 0.301425
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.292157
MPV17 MpV17 mitochondrial inner membrane protein 0.288829
CHST6 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 0.286614
TGFB2 transforming growth factor, beta 2 0.285876
TIMP3 TIMP metallopeptidase inhibitor 3 0.285507
RENBP renin binding protein 0.281821
TNF tumor necrosis factor 0.279612
KLK14 kallikrein-related peptidase 14 0.278141
LAMA3 laminin, alpha 3 0.275569
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 0.270434
ICAM1 intercellular adhesion molecule 1 0.266408
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0.265677
KRT17 keratin 17, type I 0.262025
LAMA5 laminin, alpha 5 0.260566
PRG4 proteoglycan 4 0.256925
ITGA7 integrin, alpha 7 0.248578
GDF10 growth differentiation factor 10 0.246046
CILP cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 0.243879
MYOC myocilin, trabecular meshwork inducible glucocorticoid response 0.243519
FGF9 fibroblast growth factor 9 0.243158
NPPC natriuretic peptide C 0.233459
PDGFA platelet-derived growth factor alpha polypeptide 0.232029
C1QC complement component 1, q subcomponent, C chain 0.230245
KERA keratocan 0.217861
HBEGF heparin-binding EGF-like growth factor 0.21681
INS insulin 0.214714
SRY sex determining region Y 0.21124
MATN1 matrilin 1, cartilage matrix protein 0.209513
MFAP2 microfibrillar-associated protein 2 0.209513
GOT1 glutamic-oxaloacetic transaminase 1, soluble 0.196339
NOG noggin 0.19601
MUSTN1 musculoskeletal, embryonic nuclear protein 1 0.195353
FAM195A family with sequence similarity 195, member A 0.192423
IL1B interleukin 1, beta 0.191456
HOXB2 homeobox B2 0.191456
MMP28 matrix metallopeptidase 28 0.191135
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.189857
KRT14 keratin 14, type I 0.189222
HCCAT5 hepatocellular carcinoma associated transcript 5 (non-protein coding) 0.186087
ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif, 3 0.181524
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.18093
COL12A1 collagen, type XII, alpha 1 0.180634
DDR2 discoidin domain receptor tyrosine kinase 2 0.178299
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.177154
ACTG1 actin gamma 1 0.174911
MMP7 matrix metallopeptidase 7 0.174635
ETV5 ets variant 5 0.174361
FRK fyn-related Src family tyrosine kinase 0.173003
CCL11 chemokine (C-C motif) ligand 11 0.172735
GSPT1 G1 to S phase transition 1 0.172735
RBP2 retinol binding protein 2, cellular 0.171149
CD79A CD79a molecule, immunoglobulin-associated alpha 0.16935
NCAM1 neural cell adhesion molecule 1 0.168847
LUM lumican 0.167611
CTSD cathepsin D 0.166884
NGFR nerve growth factor receptor 0.166405
EMX2 empty spiracles homeobox 2 0.165932
GIPR gastric inhibitory polypeptide receptor 0.161275
TYMP thymidine phosphorylase 0.160863
EFS embryonal Fyn-associated substrate 0.160658
FLG filaggrin 0.159658
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1 0.157943
DSG3 desmoglein 3 0.15776
PLA2R1 phospholipase A2 receptor 1, 180kDa 0.157578
KRT8 keratin 8, type II 0.156863
TNFAIP6 tumor necrosis factor, alpha-induced protein 6 0.155282
PLA2G5 phospholipase A2, group V 0.149905
MAFB v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B 0.146287
COL5A2 collagen, type V, alpha 2 0.145152
CBLN1 cerebellin 1 precursor 0.144053
CNTN1 contactin 1 0.142431
KRT3 keratin 3, type II 0.141674
TGFBI transforming growth factor, beta-induced, 68kDa 0.141523
PTH1R parathyroid hormone 1 receptor 0.139069
ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif, 4 0.138807
FOXA3 forkhead box A3 0.138494
FGF23 fibroblast growth factor 23 0.138445
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 0.138429
IBSP integrin-binding sialoprotein 0.137667
MIA melanoma inhibitory activity 0.137569
LECT1 leukocyte cell derived chemotaxin 1 0.137524
EXT2 exostosin glycosyltransferase 2 0.13746
IGFBP5 insulin-like growth factor binding protein 5 0.13674
PTCH1 patched 1 0.136721
MEF2C myocyte enhancer factor 2C 0.136182
HYAL1 hyaluronoglucosaminidase 1 0.136087
GDF5 growth differentiation factor 5 0.135981
SLC20A2 solute carrier family 20 (phosphate transporter), member 2 0.135261
SMAD7 SMAD family member 7 0.135017
FZD7 frizzled class receptor 7 0.134608
CRYAB crystallin, alpha B 0.134195
KLF10 Kruppel-like factor 10 0.133989
ITM2B integral membrane protein 2B 0.133468
LOX lysyl oxidase 0.133233
MATN3 matrilin 3 0.132978
SP3 Sp3 transcription factor 0.132949
EXT1 exostosin glycosyltransferase 1 0.132935
SCIN scinderin 0.132731
GLI1 GLI family zinc finger 1 0.132642
MC3R melanocortin 3 receptor 0.132583
ADCY9 adenylate cyclase 9 0.132568
WNT7A wingless-type MMTV integration site family, member 7A 0.132418
CPN1 carboxypeptidase N, polypeptide 1 0.131954
KCNAB2 potassium channel, voltage gated subfamily A regulatory beta subunit 2 0.131082
FRZB frizzled-related protein 0.130926
ADAM12 ADAM metallopeptidase domain 12 0.130042
DPT dermatopontin 0.129523