secondary cell wall Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A plant cell wall that is no longer able to expand and so does not permit growth. Secondary cell walls contain less pectin that primary cell walls. The secondary cell is mostly composed of cellulose and is strengthened with lignin. (Gene Ontology, GO_0009531)
Similar Terms
Downloads & Tools

Genes

61 proteins co-occuring with the secondary cell wall cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
MLST8 MTOR associated protein, LST8 homolog (S. cerevisiae) 1.45194
ALG11 ALG11, alpha-1,2-mannosyltransferase 1.20035
IRX5 iroquois homeobox 5 1.14597
MYB v-myb avian myeloblastosis viral oncogene homolog 1.13012
MANBA mannosidase, beta A, lysosomal 1.11684
AGPS alkylglycerone phosphate synthase 1.07308
NDST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 1.03879
IRX6 iroquois homeobox 6 1.00202
IRX1 iroquois homeobox 1 0.991225
ZNF318 zinc finger protein 318 0.980016
POU3F3 POU class 3 homeobox 3 0.974198
IRX3 iroquois homeobox 3 0.909251
SKAP2 src kinase associated phosphoprotein 2 0.908785
BDKRB2 bradykinin receptor B2 0.835974
SND1 staphylococcal nuclease and tudor domain containing 1 0.791022
POU3F2 POU class 3 homeobox 2 0.745477
CFHR1 complement factor H-related 1 0.744574
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.74322
MGAT4C MGAT4 family, member C 0.729732
PANX3 pannexin 3 0.720797
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.696465
PANX2 pannexin 2 0.690326
GYG1 glycogenin 1 0.65388
NMD3 NMD3 ribosome export adaptor 0.610778
MASP2 mannan-binding lectin serine peptidase 2 0.598117
MEOX2 mesenchyme homeobox 2 0.590133
TGM1 transglutaminase 1 0.577999
PAOX polyamine oxidase (exo-N4-amino) 0.574244
GUSB glucuronidase, beta 0.563847
KIF15 kinesin family member 15 0.557214
BIK BCL2-interacting killer (apoptosis-inducing) 0.54606
NFYB nuclear transcription factor Y, beta 0.51327
ARAF A-Raf proto-oncogene, serine/threonine kinase 0.501476
KIFC1 kinesin family member C1 0.499853
GALP galanin-like peptide 0.475223
CWC15 CWC15 spliceosome-associated protein 0.471609
ETFA electron-transfer-flavoprotein, alpha polypeptide 0.466799
TUB tubby bipartite transcription factor 0.440916
PRSS1 protease, serine, 1 (trypsin 1) 0.429465
UGP2 UDP-glucose pyrophosphorylase 2 0.425138
JMJD6 jumonji domain containing 6 0.401693
PANX1 pannexin 1 0.384665
EXOC7 exocyst complex component 7 0.371216
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.353282
GLB1 galactosidase, beta 1 0.347208
TPX2 TPX2, microtubule-associated 0.318579
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.294748
ISL1 ISL LIM homeobox 1 0.278141
CARD17 caspase recruitment domain family, member 17 0.268969
FLNC filamin C, gamma 0.266408
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.235966
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.235966
COMT catechol-O-methyltransferase 0.235966
MAP4 microtubule-associated protein 4 0.21124
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 0.209513
LYZ lysozyme 0.184853
MT-ATP8 ATP synthase F0 subunit 8 0.171937
MNX1 motor neuron and pancreas homeobox 1 0.170888
DNTT DNA nucleotidylexotransferase 0.169604
PI3 peptidase inhibitor 3, skin-derived 0.167366
MATK megakaryocyte-associated tyrosine kinase 0.159658