s-layer Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A crystalline protein layer surrounding some bacteria. (Gene Ontology, GO_0030115)
Similar Terms
Downloads & Tools

Genes

90 proteins co-occuring with the s-layer cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase 1.8897
TGDS TDP-glucose 4,6-dehydratase 1.86143
CDSN corneodesmosin 1.4288
SCRN3 secernin 3 1.31735
GALP galanin-like peptide 1.28143
TIGD1 tigger transposable element derived 1 1.26974
ALG5 ALG5, dolichyl-phosphate beta-glucosyltransferase 1.1726
SKAP2 src kinase associated phosphoprotein 2 0.93596
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1 0.899036
CDCA4 cell division cycle associated 4 0.867666
DPM1 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit 0.835056
NHLH2 nescient helix loop helix 2 0.81624
OCM oncomodulin 0.8089
OCM2 oncomodulin 2 0.790564
LYZ lysozyme 0.785986
SIGLEC10 sialic acid binding Ig-like lectin 10 0.782784
SGTA small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha 0.78004
ALLC allantoicase 0.772275
BIK BCL2-interacting killer (apoptosis-inducing) 0.749094
ARHGEF19 Rho guanine nucleotide exchange factor (GEF) 19 0.72258
USP9X ubiquitin specific peptidase 9, X-linked 0.684207
NSUN2 NOP2/Sun RNA methyltransferase family, member 2 0.677238
PLEKHN1 pleckstrin homology domain containing, family N member 1 0.65259
CLTA clathrin, light chain A 0.636723
TFF1 trefoil factor 1 0.626483
DAZAP2 DAZ associated protein 2 0.620529
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) 0.602752
ALG11 ALG11, alpha-1,2-mannosyltransferase 0.597697
ETFB electron-transfer-flavoprotein, beta polypeptide 0.590973
FTL ferritin, light polypeptide 0.578416
FTH1 ferritin, heavy polypeptide 1 0.576329
SUGP1 SURP and G patch domain containing 1 0.569248
LRG1 leucine-rich alpha-2-glycoprotein 1 0.562602
FN1 fibronectin 1 0.529618
PRDX1 peroxiredoxin 1 0.521023
GNPDA1 glucosamine-6-phosphate deaminase 1 0.516532
GPD1 glycerol-3-phosphate dehydrogenase 1 (soluble) 0.49661
UPRT uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) 0.478843
F2 coagulation factor II (thrombin) 0.466399
NME3 NME/NM23 nucleoside diphosphate kinase 3 0.464798
PDZK1IP1 PDZK1 interacting protein 1 0.463198
PSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5 0.454418
NME4 NME/NM23 nucleoside diphosphate kinase 4 0.450438
CLEC4M C-type lectin domain family 4, member M 0.450438
ANTXR2 anthrax toxin receptor 2 0.449245
ACADS acyl-CoA dehydrogenase, C-2 to C-3 short chain 0.429859
MPEG1 macrophage expressed 1 0.409479
UGDH UDP-glucose 6-dehydrogenase 0.385436
ANTXR1 anthrax toxin receptor 1 0.357847
VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) 0.352901
STIP1 stress-induced phosphoprotein 1 0.349484
ACRV1 acrosomal vesicle protein 1 0.349105
NT5C1A 5'-nucleotidase, cytosolic IA 0.347208
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 0.346829
LBP lipopolysaccharide binding protein 0.341529
HMGA2 high mobility group AT-hook 2 0.333979
ALDOC aldolase C, fructose-bisphosphate 0.329084
NME2 NME/NM23 nucleoside diphosphate kinase 2 0.326829
ALDOB aldolase B, fructose-bisphosphate 0.31783
PI3 peptidase inhibitor 3, skin-derived 0.316708
MUC5B mucin 5B, oligomeric mucus/gel-forming 0.314839
CWC15 CWC15 spliceosome-associated protein 0.314839
ARAF A-Raf proto-oncogene, serine/threonine kinase 0.313344
LGALS1 lectin, galactoside-binding, soluble, 1 0.312224
P4HTM prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) 0.307004
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.302912
ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 0.291787
CHRM2 cholinergic receptor, muscarinic 2 0.285507
ALDOA aldolase A, fructose-bisphosphate 0.274835
PHF12 PHD finger protein 12 0.265677
CALCOCO2 calcium binding and coiled-coil domain 2 0.257652
MGAM maltase-glucoamylase 0.254743
SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 0.246769
RBSN rabenosyn, RAB effector 0.246407
ACSS2 acyl-CoA synthetase short-chain family member 2 0.242437
THRB thyroid hormone receptor, beta 0.233817
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.232386
IGHV3-30 immunoglobulin heavy variable 3-30 0.227752
FRY furry homolog (Drosophila) 0.225976
MANBA mannosidase, beta A, lysosomal 0.22385
C1S complement component 1, s subcomponent 0.221025
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.203699
HADH hydroxyacyl-CoA dehydrogenase 0.201672
STOM stomatin 0.196669
GRN granulin 0.19601
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 0.194045
AGA aspartylglucosaminidase 0.168101
LAP3 leucine aminopeptidase 3 0.162763
FLNC filamin C, gamma 0.160658
ICAM3 intercellular adhesion molecule 3 0.15776