ribosome Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. (Gene Ontology, GO_0005840)
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Genes

151 genes co-occuring with the biological term ribosome in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ACTB actin, beta
AGTR1 angiotensin II receptor, type 1
AKT1 v-akt murine thymoma viral oncogene homolog 1
ANAPC5 anaphase promoting complex subunit 5
BAG1 BCL2-associated athanogene
BCL2 B-cell CLL/lymphoma 2
BCL2L11 BCL2-like 11 (apoptosis facilitator)
BIRC3 baculoviral IAP repeat containing 3
BMS1 BMS1 ribosome biogenesis factor
BYSL bystin-like
C12ORF65 chromosome 12 open reading frame 65
C14ORF169 chromosome 14 open reading frame 169
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CDKN2A cyclin-dependent kinase inhibitor 2A
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CSDE1 cold shock domain containing E1, RNA-binding
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CSK c-src tyrosine kinase
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33
DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35
DICER1 dicer 1, ribonuclease type III
DKC1 dyskeratosis congenita 1, dyskerin
DMD dystrophin
DNAJC2 DnaJ (Hsp40) homolog, subfamily C, member 2
EBNA1BP2 EBNA1 binding protein 2
EIF1AX eukaryotic translation initiation factor 1A, X-linked
EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
EIF3A eukaryotic translation initiation factor 3, subunit A
EIF3C eukaryotic translation initiation factor 3, subunit C
EIF3D eukaryotic translation initiation factor 3, subunit D
EIF3E eukaryotic translation initiation factor 3, subunit E
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2
EIF5A eukaryotic translation initiation factor 5A
EIF5B eukaryotic translation initiation factor 5B
EIF6 eukaryotic translation initiation factor 6
EMG1 EMG1 N1-specific pseudouridine methyltransferase
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ETF1 eukaryotic translation termination factor 1
FFAR1 free fatty acid receptor 1
FFAR3 free fatty acid receptor 3
FGF1 fibroblast growth factor 1 (acidic)
FGF2 fibroblast growth factor 2 (basic)
FKBP3 FK506 binding protein 3, 25kDa
FTH1 ferritin, heavy polypeptide 1
FTSJ3 FtsJ homolog 3 (E. coli)
GJA1 gap junction protein, alpha 1, 43kDa
GJB2 gap junction protein, beta 2, 26kDa
GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
GNL3 guanine nucleotide binding protein-like 3 (nucleolar)
GUCY1B2 guanylate cyclase 1, soluble, beta 2 (pseudogene)
GZMH granzyme H (cathepsin G-like 2, protein h-CCPX)
H6PD hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
HDGF hepatoma-derived growth factor
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like
HNRNPK heterogeneous nuclear ribonucleoprotein K
HNRNPL heterogeneous nuclear ribonucleoprotein L
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
IL3 interleukin 3
ILF2 interleukin enhancer binding factor 2
INSR insulin receptor
ISG20L2 interferon stimulated exonuclease gene 20kDa-like 2
JUN jun proto-oncogene
KIF5B kinesin family member 5B
LEF1 lymphoid enhancer-binding factor 1
LETM1 leucine zipper-EF-hand containing transmembrane protein 1
LMNB1 lamin B1
LUZP6 leucine zipper protein 6
LYAR Ly1 antibody reactive
MALSU1 mitochondrial assembly of ribosomal large subunit 1
MAP3K5 mitogen-activated protein kinase kinase kinase 5
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
METTL17 methyltransferase like 17
MINA MYC induced nuclear antigen
MIR122 microRNA 122
MPV17L2 MPV17 mitochondrial membrane protein-like 2
MRPL23 mitochondrial ribosomal protein L23
MRTO4 mRNA turnover 4 homolog (S. cerevisiae)
MTG1 mitochondrial ribosome-associated GTPase 1
MTG2 mitochondrial ribosome-associated GTPase 2
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MTPN myotrophin
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase
MXD1 MAX dimerization protein 1
MYC v-myc avian myelocytomatosis viral oncogene homolog
NAA16 N(alpha)-acetyltransferase 16, NatA auxiliary subunit
NAA20 N(alpha)-acetyltransferase 20, NatB catalytic subunit
NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit
NCL nucleolin
NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
NIP7 NIP7, nucleolar pre-rRNA processing protein
NKRF NFKB repressing factor
NOL11 nucleolar protein 11
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NVL nuclear VCP-like
OXA1L oxidase (cytochrome c) assembly 1-like
PABPC1 poly(A) binding protein, cytoplasmic 1
PARP1 poly (ADP-ribose) polymerase 1
PCBP1 poly(rC) binding protein 1
PDCD4 programmed cell death 4 (neoplastic transformation inhibitor)
PELP1 proline, glutamate and leucine rich protein 1
PES1 pescadillo ribosomal biogenesis factor 1
PIH1D1 PIH1 domain containing 1
PPIB peptidylprolyl isomerase B (cyclophilin B)
PTBP1 polypyrimidine tract binding protein 1
PTCD3 pentatricopeptide repeat domain 3
R3HCC1 R3H domain and coiled-coil containing 1
RMND1 required for meiotic nuclear division 1 homolog (S. cerevisiae)
RPA2 replication protein A2, 32kDa
RPF2 ribosome production factor 2 homolog (S. cerevisiae)
RPL11 ribosomal protein L11
RPL39L ribosomal protein L39-like
RPL5 ribosomal protein L5
RPL7 ribosomal protein L7
RPS10 ribosomal protein S10
RPS19 ribosomal protein S19
RPS3 ribosomal protein S3
RPS8 ribosomal protein S8
RPS9 ribosomal protein S9
RRBP1 ribosome binding protein 1
RUNX1 runt-related transcription factor 1
SBDS Shwachman-Bodian-Diamond syndrome
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae)
SENP3 SUMO1/sentrin/SMT3 specific peptidase 3
SF3B2 splicing factor 3b, subunit 2, 145kDa
SF3B4 splicing factor 3b, subunit 4, 49kDa
SHMT1 serine hydroxymethyltransferase 1 (soluble)
SIRT7 sirtuin 7
SPECC1 sperm antigen with calponin homology and coiled-coil domains 1
SRC SRC proto-oncogene, non-receptor tyrosine kinase
SREBF1 sterol regulatory element binding transcription factor 1
SRSF3 serine/arginine-rich splicing factor 3
SSB Sjogren syndrome antigen B (autoantigen La)
TCOF1 Treacher Collins-Franceschetti syndrome 1
TDP2 tyrosyl-DNA phosphodiesterase 2
TEK TEK tyrosine kinase, endothelial
TERC telomerase RNA component
TEX10 testis expressed 10
TGFB1 transforming growth factor, beta 1
TP53 tumor protein p53
TPH2 tryptophan hydroxylase 2
TRAF1 TNF receptor-associated factor 1
UPF1 UPF1 regulator of nonsense transcripts homolog (yeast)
UPF2 UPF2 regulator of nonsense transcripts homolog (yeast)
VEGFA vascular endothelial growth factor A
WDR18 WD repeat domain 18
XIAP X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase