ribonucleoprotein granule Gene Set

Dataset COMPARTMENTS Curated Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A non-membranous macromolecular complex containing proteins and translationally silenced mRNAs. RNA granules contain proteins that control the localization, stability, and translation of their RNA cargo. Different types of RNA granules (RGs) exist, depending on the cell type and cellular conditions. (Gene Ontology, GO_0035770)
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Genes

94 proteins localized to the ribonucleoprotein granule cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
BTBD1 BTB (POZ) domain containing 1 0.663342
MBNL1 muscleblind-like splicing regulator 1 0.663342
AJUBA ajuba LIM protein 0.663342
MOV10 Mov10 RISC complex RNA helicase 0.663342
ATXN2L ataxin 2-like 0.663342
WTIP Wilms tumor 1 interacting protein 0.663342
ATXN2 ataxin 2 0.663342
SQSTM1 sequestosome 1 0.663342
RBM4 RNA binding motif protein 4 0.663342
TDRD7 tudor domain containing 7 0.663342
PNRC2 proline-rich nuclear receptor coactivator 2 0.663342
DCP1A decapping mRNA 1A 0.663342
LIMD1 LIM domains containing 1 0.663342
LARP4B La ribonucleoprotein domain family, member 4B 0.663342
LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) 0.663342
DIS3L2 DIS3 like 3'-5' exoribonuclease 2 0.663342
EIF4E eukaryotic translation initiation factor 4E 0.663342
TIA1 TIA1 cytotoxic granule-associated RNA binding protein 0.663342
PAN2 PAN2 poly(A) specific ribonuclease subunit 0.663342
APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 0.663342
APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G 0.663342
APOBEC3D apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D 0.663342
APOBEC3H apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H 0.663342
TOP1 topoisomerase (DNA) I 0.663342
DDX3X DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 0.663342
PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) 0.663342
PABPC1 poly(A) binding protein, cytoplasmic 1 0.663342
CNOT1 CCR4-NOT transcription complex, subunit 1 0.663342
BTBD2 BTB (POZ) domain containing 2 0.663342
ZFP36 ZFP36 ring finger protein 0.663342
IGF2BP1 insulin-like growth factor 2 mRNA binding protein 1 0.663342
UPF1 UPF1 regulator of nonsense transcripts homolog (yeast) 0.663342
YBX1 Y box binding protein 1 0.663342
AGO2 argonaute RISC catalytic component 2 0.663342
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1 0.663342
YTHDF2 YTH N(6)-methyladenosine RNA binding protein 2 0.663342
LIN28A lin-28 homolog A (C. elegans) 0.663342
TRIM21 tripartite motif containing 21 0.663342
TNRC6A trinucleotide repeat containing 6A 0.663342
ZNF66 zinc finger protein 66 0.663342
TRIM5 tripartite motif containing 5 0.663342
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 0.663342
EDC4 enhancer of mRNA decapping 4 0.663342
PATL1 protein associated with topoisomerase II homolog 1 (yeast) 0.663342
DCP2 decapping mRNA 2 0.663342
CAPRIN1 cell cycle associated protein 1 0.237908
GRB7 growth factor receptor-bound protein 7 0.237908
ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 0.237908
PSMA6 proteasome (prosome, macropain) subunit, alpha type, 6 0.237908
CNOT3 CCR4-NOT transcription complex, subunit 3 0.237908
ARNTL aryl hydrocarbon receptor nuclear translocator-like 0.237908
CNOT7 CCR4-NOT transcription complex, subunit 7 0.237908
PIWIL4 piwi-like RNA-mediated gene silencing 4 0.237908
PIWIL2 piwi-like RNA-mediated gene silencing 2 0.237908
CLOCK clock circadian regulator 0.237908
CARHSP1 calcium regulated heat stable protein 1, 24kDa 0.237908
DDX25 DEAD (Asp-Glu-Ala-Asp) box helicase 25 0.237908
PIWIL1 piwi-like RNA-mediated gene silencing 1 0.237908
NANOS2 nanos homolog 2 (Drosophila) 0.237908
NANOS3 nanos homolog 3 (Drosophila) 0.237908
TDRD5 tudor domain containing 5 0.237908
TDRD6 tudor domain containing 6 0.237908
PUM2 pumilio RNA-binding family member 2 0.237908
TDRD1 tudor domain containing 1 0.237908
TDRD9 tudor domain containing 9 0.237908
TDRKH tudor and KH domain containing 0.237908
PSMA2 proteasome (prosome, macropain) subunit, alpha type, 2 0.237908
PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4 0.237908
RQCD1 RCD1 required for cell differentiation1 homolog (S. pombe) 0.237908
EIF2S1 eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa 0.237908
OGFOD1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 0.237908
CIRBP cold inducible RNA binding protein 0.237908
TRIM71 tripartite motif containing 71, E3 ubiquitin protein ligase 0.237908
HENMT1 HEN1 methyltransferase homolog 1 (Arabidopsis) 0.237908
MAEL maelstrom spermatogenic transposon silencer 0.237908
DDX4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 0.237908
TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 0.237908
PSMC3 proteasome (prosome, macropain) 26S subunit, ATPase, 3 0.237908
PSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2 0.237908
POLR2G polymerase (RNA) II (DNA directed) polypeptide G 0.098109
STAU1 staufen double-stranded RNA binding protein 1 0.098109
RC3H1 ring finger and CCCH-type domains 1 0.098109
UHMK1 U2AF homology motif (UHM) kinase 1 0.098109
POLR2D polymerase (RNA) II (DNA directed) polypeptide D 0.098109
PATL2 protein associated with topoisomerase II homolog 2 (yeast) 0.03318
G3BP1 GTPase activating protein (SH3 domain) binding protein 1 0.03318
AGO1 argonaute RISC catalytic component 1 0.03318
KHSRP KH-type splicing regulatory protein 0.03318
PAN3 PAN3 poly(A) specific ribonuclease subunit 0.03318
FMR1 fragile X mental retardation 1 0.03318
AGO4 argonaute RISC catalytic component 4 0.03318
CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.03318
PQBP1 polyglutamine binding protein 1 0.03318
XRN1 5'-3' exoribonuclease 1 0.03318