retinal stem cell Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description Retinal progenitor cell. (BRENDA Tissue and Enzyme Source Ontology, BTO_0003982)
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Genes

182 proteins co-occuring with the tissue retinal stem cell in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
VSX2 visual system homeobox 2 2.53769
ATOH7 atonal homolog 7 (Drosophila) 2.23416
PAX6 paired box 6 2.08723
RHO rhodopsin 2.00172
RCVRN recoverin 1.94463
POU4F2 POU class 4 homeobox 2 1.87185
CRX cone-rod homeobox 1.86823
NES nestin 1.77278
LHX2 LIM homeobox 2 1.56915
SIX3 SIX homeobox 3 1.52856
SIX6 SIX homeobox 6 1.48504
NR2E1 nuclear receptor subfamily 2, group E, member 1 1.44079
CRB2 crumbs family member 2 1.43801
OTX2 orthodenticle homeobox 2 1.43477
NRL neural retina leucine zipper 1.4283
FOXN4 forkhead box N4 1.37864
ONECUT2 one cut homeobox 2 1.34043
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 1.33681
RLBP1 retinaldehyde binding protein 1 1.29714
OPN1SW opsin 1 (cone pigments), short-wave-sensitive 1.25413
VSX1 visual system homeobox 1 1.24119
NOTCH1 notch 1 1.16205
GFAP glial fibrillary acidic protein 1.1452
ASCL1 achaete-scute family bHLH transcription factor 1 1.12172
DHX30 DEAH (Asp-Glu-Ala-His) box helicase 30 1.1142
FGF2 fibroblast growth factor 2 (basic) 1.03653
AIPL1 aryl hydrocarbon receptor interacting protein-like 1 1.01243
ISL1 ISL LIM homeobox 1 1.00632
ROM1 retinal outer segment membrane protein 1 0.973283
DKK3 dickkopf WNT signaling pathway inhibitor 3 0.973283
NR2E3 nuclear receptor subfamily 2, group E, member 3 0.95729
ST7L suppression of tumorigenicity 7 like 0.95384
DACH1 dachshund family transcription factor 1 0.94867
DKK1 dickkopf WNT signaling pathway inhibitor 1 0.945656
PALMD palmdelphin 0.938777
RB1 retinoblastoma 1 0.919061
POU4F1 POU class 4 homeobox 1 0.913507
CCND1 cyclin D1 0.910946
CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 0.90924
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.906256
NEUROD4 neuronal differentiation 4 0.89732
RAX2 retina and anterior neural fold homeobox 2 0.886286
GNL3 guanine nucleotide binding protein-like 3 (nucleolar) 0.882897
NCAN neurocan 0.869373
ARHGEF18 Rho/Rac guanine nucleotide exchange factor (GEF) 18 0.858416
PROX1 prospero homeobox 1 0.852948
MNX1 motor neuron and pancreas homeobox 1 0.843286
FOXI2 forkhead box I2 0.835318
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) 0.83448
RAX retina and anterior neural fold homeobox 0.82736
NEUROD1 neuronal differentiation 1 0.807299
HES5 hes family bHLH transcription factor 5 0.794792
EFNA3 ephrin-A3 0.792709
OPN4 opsin 4 0.760742
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) 0.760328
CNTF ciliary neurotrophic factor 0.748753
WNT2B wingless-type MMTV integration site family, member 2B 0.737206
SOX2 SRY (sex determining region Y)-box 2 0.731442
SHH sonic hedgehog 0.726918
SALL3 spalt-like transcription factor 3 0.716651
ABI1 abl-interactor 1 0.706402
NDP Norrie disease (pseudoglioma) 0.701489
NRARP NOTCH-regulated ankyrin repeat protein 0.687184
NUB1 negative regulator of ubiquitin-like proteins 1 0.67821
NOTCH3 notch 3 0.661523
KLF4 Kruppel-like factor 4 (gut) 0.648127
AXIN2 axin 2 0.645695
GPM6A glycoprotein M6A 0.644884
NOG noggin 0.637999
TGIF2 TGFB-induced factor homeobox 2 0.632335
TLL1 tolloid-like 1 0.624254
NOTCH4 notch 4 0.606112
GLI2 GLI family zinc finger 2 0.602088
MRAP melanocortin 2 receptor accessory protein 0.601686
THY1 Thy-1 cell surface antigen 0.592043
RBP3 retinol binding protein 3, interstitial 0.58322
FGF1 fibroblast growth factor 1 (acidic) 0.564035
BSX brain-specific homeobox 0.55249
PTPRK protein tyrosine phosphatase, receptor type, K 0.539793
PRPH2 peripherin 2 (retinal degeneration, slow) 0.529903
PARD3 par-3 family cell polarity regulator 0.529508
MCM6 minichromosome maintenance complex component 6 0.529113
NANOG Nanog homeobox 0.522011
SFRP2 secreted frizzled-related protein 2 0.520435
MITF microphthalmia-associated transcription factor 0.51453
PTPRE protein tyrosine phosphatase, receptor type, E 0.51335
BEST2 bestrophin 2 0.509813
OLIG2 oligodendrocyte lineage transcription factor 2 0.505102
TCF7 transcription factor 7 (T-cell specific, HMG-box) 0.500398
EFHD1 EF-hand domain family, member D1 0.499615
SLBP stem-loop binding protein 0.498048
MEIS2 Meis homeobox 2 0.493354
MELK maternal embryonic leucine zipper kinase 0.492182
DICER1 dicer 1, ribonuclease type III 0.489057
TFEC transcription factor EC 0.485935
RORB RAR-related orphan receptor B 0.483986
EFNB1 ephrin-B1 0.477756
MARCKSL1 MARCKS-like 1 0.47348
EYA2 EYA transcriptional coactivator and phosphatase 2 0.468824
FOXRED1 FAD-dependent oxidoreductase domain containing 1 0.460692
PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta 0.45567
SUFU suppressor of fused homolog (Drosophila) 0.455284
DLL3 delta-like 3 (Drosophila) 0.449116
CCND2 cyclin D2 0.443347
PROM1 prominin 1 0.439123
ONECUT1 one cut homeobox 1 0.438356
STK3 serine/threonine kinase 3 0.434523
RELN reelin 0.426109
UTF1 undifferentiated embryonic cell transcription factor 1 0.424963
PLAGL1 pleiomorphic adenoma gene-like 1 0.413532
RPE65 retinal pigment epithelium-specific protein 65kDa 0.407073
PTPRG protein tyrosine phosphatase, receptor type, G 0.402144
ZIC3 Zic family member 3 0.396465
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group) 0.388158
MPP5 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) 0.387404
LHX9 LIM homeobox 9 0.385143
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.38326
MIRLET7B microRNA let-7b 0.381379
EPHB3 EPH receptor B3 0.380251
STK26 serine/threonine protein kinase 26 0.380251
H3F3B H3 histone, family 3B (H3.3B) 0.379123
H3F3A H3 histone, family 3A 0.379123
HES3 hes family bHLH transcription factor 3 0.373493
HES1 hes family bHLH transcription factor 1 0.371245
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.370496
BDNF brain-derived neurotrophic factor 0.369747
EPHA4 EPH receptor A4 0.367876
DES desmin 0.365633
PRIM1 primase, DNA, polypeptide 1 (49kDa) 0.352227
CCNB1 cyclin B1 0.346298
VEGFA vascular endothelial growth factor A 0.342602
GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3 0.342602
LHX4 LIM homeobox 4 0.340757
POU3F2 POU class 3 homeobox 2 0.33744
CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2) 0.335968
BHLHE22 basic helix-loop-helix family, member e22 0.333028
PCNA proliferating cell nuclear antigen 0.329727
EPHA5 EPH receptor A5 0.32753
ENO2 enolase 2 (gamma, neuronal) 0.323144
LHX6 LIM homeobox 6 0.322779
PTPRB protein tyrosine phosphatase, receptor type, B 0.319863
SIRT1 sirtuin 1 0.316588
EFNA2 ephrin-A2 0.314409
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.310421
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 0.307528
CCNE2 cyclin E2 0.302118
ZIC2 Zic family member 2 0.30032
FGFR1 fibroblast growth factor receptor 1 0.299242
SOX11 SRY (sex determining region Y)-box 11 0.293151
CALB1 calbindin 1, 28kDa 0.289582
BMI1 BMI1 proto-oncogene, polycomb ring finger 0.285671
ZIC1 Zic family member 1 0.285316
STOM stomatin 0.284253
IHH indian hedgehog 0.283899
GDF6 growth differentiation factor 6 0.276495
DCX doublecortin 0.275794
CCND3 cyclin D3 0.275444
TUB tubby bipartite transcription factor 0.275094
PODXL podocalyxin-like 0.271952
GUCY2D guanylate cyclase 2D, membrane (retina-specific) 0.267446
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 0.264011
EYA1 EYA transcriptional coactivator and phosphatase 1 0.263669
CDH4 cadherin 4, type 1, R-cadherin (retinal) 0.249653
GRK1 G protein-coupled receptor kinase 1 0.243294
SOX4 SRY (sex determining region Y)-box 4 0.243294
MEIS1 Meis homeobox 1 0.241132
OTX1 orthodenticle homeobox 1 0.238108
IL31RA interleukin 31 receptor A 0.234016
NEUROG2 neurogenin 2 0.23176
GLUL glutamate-ammonia ligase 0.231206
SYP synaptophysin 0.230656
HMGA2 high mobility group AT-hook 2 0.23011
HEY2 hes-related family bHLH transcription factor with YRPW motif 2 0.227707
EXTL3 exostosin-like glycosyltransferase 3 0.219047
E2F3 E2F transcription factor 3 0.21883
WNT3A wingless-type MMTV integration site family, member 3A 0.218613
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.218398
MMP2 matrix metallopeptidase 2 0.218186
PTF1A pancreas specific transcription factor, 1a 0.216933
NOVA2 neuro-oncological ventral antigen 2 0.215341
CD44 CD44 molecule (Indian blood group) 0.215341
MAP2 microtubule-associated protein 2 0.214202