retinal cone Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The other light-sensitive cell type of the retina, that, unlike retinal rods, is differentially sensitive to particular wavelengths of light, and is important for colour vision. There are three types of cones, each type sensitive to red, green or blue. Present in large numbers in the fovea. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001036)
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Genes

146 proteins co-occuring with the tissue retinal cone in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
RHO rhodopsin 2.28159
NXNL1 nucleoredoxin-like 1 1.9964
EFHD1 EF-hand domain family, member D1 1.91174
GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 1.83682
SLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 1.81839
NR2E3 nuclear receptor subfamily 2, group E, member 3 1.67306
ARR3 arrestin 3, retinal (X-arrestin) 1.60862
RPE65 retinal pigment epithelium-specific protein 65kDa 1.59622
NRL neural retina leucine zipper 1.5893
CRX cone-rod homeobox 1.5214
CNGA3 cyclic nucleotide gated channel alpha 3 1.49114
GUCY2D guanylate cyclase 2D, membrane (retina-specific) 1.48317
CNGB3 cyclic nucleotide gated channel beta 3 1.45564
GRK1 G protein-coupled receptor kinase 1 1.45564
RBP3 retinol binding protein 3, interstitial 1.44729
PDE6C phosphodiesterase 6C, cGMP-specific, cone, alpha prime 1.4445
CLUL1 clusterin-like 1 (retinal) 1.44033
GUCA1B guanylate cyclase activator 1B (retina) 1.40754
MATN3 matrilin 3 1.40064
OPN1MW opsin 1 (cone pigments), medium-wave-sensitive 1.36769
RHAG Rh-associated glycoprotein 1.31874
ZBED4 zinc finger, BED-type containing 4 1.31829
OPN4 opsin 4 1.26844
GUCA2A guanylate cyclase activator 2A (guanylin) 1.24476
GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 1.24476
GUCY2C guanylate cyclase 2C 1.24342
NPR1 natriuretic peptide receptor 1 1.24074
PDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma 1.20778
NOTCH1 notch 1 1.198
ANAPC16 anaphase promoting complex subunit 16 1.13678
RP1L1 retinitis pigmentosa 1-like 1 1.12837
RCVRN recoverin 1.12837
PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 1.06074
KCNV2 potassium channel, voltage gated modifier subfamily V, member 2 1.04445
NADSYN1 NAD synthetase 1 0.99978
SDCCAG8 serologically defined colon cancer antigen 8 0.969388
OPN1LW opsin 1 (cone pigments), long-wave-sensitive 0.955565
OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 0.954271
RDH5 retinol dehydrogenase 5 (11-cis/9-cis) 0.941355
NMNAT3 nicotinamide nucleotide adenylyltransferase 3 0.935341
PDC phosducin 0.907535
IFT20 intraflagellar transport 20 0.870639
GNGT2 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 0.862627
PDE6A phosphodiesterase 6A, cGMP-specific, rod, alpha 0.854629
CDK10 cyclin-dependent kinase 10 0.831966
SLC24A4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 0.821085
CELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 0.802293
MNX1 motor neuron and pancreas homeobox 1 0.797708
IRX5 iroquois homeobox 5 0.796458
GTF2IRD1 GTF2I repeat domain containing 1 0.790212
POU4F2 POU class 4 homeobox 2 0.780648
SLC24A3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 0.77027
PITPNB phosphatidylinositol transfer protein, beta 0.764882
AIPL1 aryl hydrocarbon receptor interacting protein-like 1 0.759086
NMNAT2 nicotinamide nucleotide adenylyltransferase 2 0.751645
PITPNM1 phosphatidylinositol transfer protein, membrane-associated 1 0.746689
CMC1 C-x(9)-C motif containing 1 0.723631
RLBP1 retinaldehyde binding protein 1 0.694537
GNAZ guanine nucleotide binding protein (G protein), alpha z polypeptide 0.688409
PITPNA phosphatidylinositol transfer protein, alpha 0.678617
PARD3 par-3 family cell polarity regulator 0.674135
PRPH2 peripherin 2 (retinal degeneration, slow) 0.674135
CACNA2D4 calcium channel, voltage-dependent, alpha 2/delta subunit 4 0.655836
NMNAT1 nicotinamide nucleotide adenylyltransferase 1 0.652183
CD177 CD177 molecule 0.6461
RTN1 reticulon 1 0.639214
EML1 echinoderm microtubule associated protein like 1 0.635572
LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) 0.635167
CACNA1F calcium channel, voltage-dependent, L type, alpha 1F subunit 0.631931
IRX1 iroquois homeobox 1 0.627081
RORB RAR-related orphan receptor B 0.626677
VSX1 visual system homeobox 1 0.621024
GLB1 galactosidase, beta 1 0.619007
PAGE5 P antigen family, member 5 (prostate associated) 0.617393
RXRG retinoid X receptor, gamma 0.614571
RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1 0.608124
ELOVL4 ELOVL fatty acid elongase 4 0.607319
GRB14 growth factor receptor-bound protein 14 0.606916
STRA6 stimulated by retinoic acid 6 0.588832
RD3 retinal degeneration 3 0.584422
CEP290 centrosomal protein 290kDa 0.57082
PDE6B phosphodiesterase 6B, cGMP-specific, rod, beta 0.562042
RPGR retinitis pigmentosa GTPase regulator 0.535042
GNB3 guanine nucleotide binding protein (G protein), beta polypeptide 3 0.514136
PPCS phosphopantothenoylcysteine synthetase 0.512957
MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog 0.511778
ATOH7 atonal homolog 7 (Drosophila) 0.510206
USH1C Usher syndrome 1C (autosomal recessive, severe) 0.508242
CNTF ciliary neurotrophic factor 0.507849
PCDH15 protocadherin-related 15 0.502357
NPHS1 nephrosis 1, congenital, Finnish type (nephrin) 0.501182
ATXN7 ataxin 7 0.496092
ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 0.493745
NR2F1 nuclear receptor subfamily 2, group F, member 1 0.485545
ROM1 retinal outer segment membrane protein 1 0.484766
SUCLG2 succinate-CoA ligase, GDP-forming, beta subunit 0.478923
PIAS3 protein inhibitor of activated STAT, 3 0.478534
BHLHE22 basic helix-loop-helix family, member e22 0.468824
KIRREL kin of IRRE like (Drosophila) 0.468048
HTR2A 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled 0.460305
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.452198
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.451813
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.450657
CUL3 cullin 3 0.450271
POU4F1 POU class 4 homeobox 1 0.43414
CDH23 cadherin-related 23 0.432991
SOX11 SRY (sex determining region Y)-box 11 0.426872
CNTLN centlein, centrosomal protein 0.41087
CSAD cysteine sulfinic acid decarboxylase 0.409731
HBG2 hemoglobin, gamma G 0.407453
CALB1 calbindin 1, 28kDa 0.406694
NADK NAD kinase 0.400628
SAG S-antigen; retina and pineal gland (arrestin) 0.394576
SYNE1 spectrin repeat containing, nuclear envelope 1 0.390044
GRB7 growth factor receptor-bound protein 7 0.388535
LHX2 LIM homeobox 2 0.384766
TEK TEK tyrosine kinase, endothelial 0.382884
SOX4 SRY (sex determining region Y)-box 4 0.371619
HSPB8 heat shock 22kDa protein 8 0.361155
VSX2 visual system homeobox 2 0.330827
FGF5 fibroblast growth factor 5 0.327896
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.322779
EGFR epidermal growth factor receptor 0.31332
LAD1 ladinin 1 0.305001
MYO7A myosin VIIA 0.300679
CALB2 calbindin 2 0.298165
EDN2 endothelin 2 0.289582
PAX6 paired box 6 0.280717
AP1M2 adaptor-related protein complex 1, mu 2 subunit 0.270561
PAX2 paired box 2 0.257237
AP2M1 adaptor-related protein complex 2, mu 1 subunit 0.257237
RDH8 retinol dehydrogenase 8 (all-trans) 0.255567
PHYH phytanoyl-CoA 2-hydroxylase 0.255234
SPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) 0.253578
MYLK myosin light chain kinase 0.251279
NPTXR neuronal pentraxin receptor 0.24804
STAB2 stabilin 2 0.24804
CXADR coxsackie virus and adenovirus receptor 0.247399
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 0.247079
ATN1 atrophin 1 0.24486
ARRB2 arrestin, beta 2 0.238108
CSF2RA colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) 0.233731
KCNJ10 potassium channel, inwardly rectifying subfamily J, member 10 0.232599
ARPP21 cAMP-regulated phosphoprotein, 21kDa 0.226411
SYP synaptophysin 0.221061
EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 0.214576