replication compartment Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Globular nuclear domains where the transcription and replication of the viral genome occurs. More than one site can be present simultaneously. (Gene Ontology, GO_0046809)
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Genes

56 proteins co-occuring with the replication compartment cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ARPP21 cAMP-regulated phosphoprotein, 21kDa 1.06549
ZNF350 zinc finger protein 350 0.904138
PML promyelocytic leukemia 0.873186
SP100 SP100 nuclear antigen 0.852042
ATRIP ATR interacting protein 0.759069
COLQ collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 0.746381
OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 0.691202
RAD50 RAD50 homolog (S. cerevisiae) 0.689888
TNKS2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 0.65388
HSPA8 heat shock 70kDa protein 8 0.65345
RPA2 replication protein A2, 32kDa 0.630318
PGM3 phosphoglucomutase 3 0.622229
CCND3 cyclin D3 0.616709
MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 0.598538
ATM ATM serine/threonine kinase 0.591812
SIX3 SIX homeobox 3 0.535772
NADK NAD kinase 0.523885
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.517348
DDB2 damage-specific DNA binding protein 2, 48kDa 0.48287
TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 0.476429
MSH3 mutS homolog 3 0.448451
MSH2 mutS homolog 2 0.444482
WASH7P WAS protein family homolog 7 pseudogene 0.427497
WASH6P WAS protein family homolog 6 pseudogene 0.42396
WASH1 WAS protein family homolog 1 0.421604
RCOR1 REST corepressor 1 0.41182
PSMD4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 0.367771
NCL nucleolin 0.365477
OSBP oxysterol binding protein 0.349484
RAD9A RAD9 homolog A (S. pombe) 0.347208
C1QBP complement component 1, q subcomponent binding protein 0.340395
PIP prolactin-induced protein 0.332472
CDK4 cyclin-dependent kinase 4 0.330966
DDB1 damage-specific DNA binding protein 1, 127kDa 0.325327
HEXIM1 hexamethylene bis-acetamide inducible 1 0.309613
RAD51 RAD51 recombinase 0.294007
GSTA3 glutathione S-transferase alpha 3 0.286983
GSTA2 glutathione S-transferase alpha 2 0.285138
GSTA4 glutathione S-transferase alpha 4 0.285138
GSTA1 glutathione S-transferase alpha 1 0.282926
UNG uracil-DNA glycosylase 0.274835
LMNA lamin A/C 0.274101
KDM1A lysine (K)-specific demethylase 1A 0.258016
RFC1 replication factor C (activator 1) 1, 145kDa 0.253291
TP53 tumor protein p53 0.246407
MSH6 mutS homolog 6 0.243879
MX1 MX dynamin-like GTPase 1 0.242437
CDT1 chromatin licensing and DNA replication factor 1 0.240636
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 0.235607
CDK6 cyclin-dependent kinase 6 0.228108
ACKR1 atypical chemokine receptor 1 (Duffy blood group) 0.205059
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.194371
PARK2 parkin RBR E3 ubiquitin protein ligase 0.19307
DAXX death-domain associated protein 0.181823
RAD52 RAD52 homolog (S. cerevisiae) 0.177154
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 0.168847