r2 basal plate Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
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Genes

176 genes with high or low expression in r2 basal plate relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
C1QB complement component 1, q subcomponent, B chain 1.86303
TFF3 trefoil factor 3 (intestinal) 1.8179
PGM3 phosphoglucomutase 3 1.68727
RLN3 relaxin 3 1.67655
SPTLC3 serine palmitoyltransferase, long chain base subunit 3 1.46823
KRT16 keratin 16, type I 1.43335
MMACHC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria 1.39335
NR1H4 nuclear receptor subfamily 1, group H, member 4 1.3403
RNF152 ring finger protein 152 1.3376
CA13 carbonic anhydrase XIII 1.2839
PDGFRL platelet-derived growth factor receptor-like 1.26126
FGD5 FYVE, RhoGEF and PH domain containing 5 1.19755
EMX2 empty spiracles homeobox 2 1.19517
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 1.18433
CCDC124 coiled-coil domain containing 124 1.167
RAB30 RAB30, member RAS oncogene family 1.16329
TPH2 tryptophan hydroxylase 2 1.15753
KDM2B lysine (K)-specific demethylase 2B 1.13576
ARMCX6 armadillo repeat containing, X-linked 6 1.10542
MNS1 meiosis-specific nuclear structural 1 1.10338
ATHL1 ATH1, acid trehalase-like 1 (yeast) 1.09458
ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 1.08555
GLS glutaminase 1.08551
INSL6 insulin-like 6 1.0851
LYZL4 lysozyme-like 4 1.07766
USP39 ubiquitin specific peptidase 39 1.06604
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) 1.05295
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 1.04379
SLC22A3 solute carrier family 22 (organic cation transporter), member 3 1.02991
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 1.02471
RBM6 RNA binding motif protein 6 1.01806
MUS81 MUS81 structure-specific endonuclease subunit 1.01738
GPX4 glutathione peroxidase 4 1.01338
TONSL tonsoku-like, DNA repair protein 1.00511
KIF26A kinesin family member 26A 1.00406
ITSN1 intersectin 1 (SH3 domain protein) 1.00001

low expression

Symbol Name Standardized Value
TAS2R10 taste receptor, type 2, member 10 -3.58775
SLCO1B3 solute carrier organic anion transporter family, member 1B3 -2.60181
CCDC175 coiled-coil domain containing 175 -2.56294
RCCD1 RCC1 domain containing 1 -2.36273
MMP21 matrix metallopeptidase 21 -2.17932
EGLN3 egl-9 family hypoxia-inducible factor 3 -2.11544
CRY1 cryptochrome circadian clock 1 -2.03547
SLC16A7 solute carrier family 16 (monocarboxylate transporter), member 7 -2.01659
FCGBP Fc fragment of IgG binding protein -1.93224
FAM109B family with sequence similarity 109, member B -1.845
NLRP3 NLR family, pyrin domain containing 3 -1.83332
HSCB HscB mitochondrial iron-sulfur cluster co-chaperone -1.81061
OSMR oncostatin M receptor -1.75888
ANG angiogenin, ribonuclease, RNase A family, 5 -1.75576
LHX2 LIM homeobox 2 -1.72449
IL17F interleukin 17F -1.72199
PTPRT protein tyrosine phosphatase, receptor type, T -1.71499
GAL3ST2 galactose-3-O-sulfotransferase 2 -1.62786
SEPT12 septin 12 -1.58355
HPSE2 heparanase 2 (inactive) -1.58128
ADRA2B adrenoceptor alpha 2B -1.56932
OR1I1 olfactory receptor, family 1, subfamily I, member 1 -1.54236
OXT oxytocin/neurophysin I prepropeptide -1.52347
GNG10 guanine nucleotide binding protein (G protein), gamma 10 -1.51691
CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough -1.5045
PCDHA7 protocadherin alpha 7 -1.502
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) -1.48712
OR8D4 olfactory receptor, family 8, subfamily D, member 4 -1.46895
CASC5 cancer susceptibility candidate 5 -1.46253
FAM69C family with sequence similarity 69, member C -1.46049
GFER growth factor, augmenter of liver regeneration -1.45191
ZP2 zona pellucida glycoprotein 2 (sperm receptor) -1.44819
DYTN dystrotelin -1.43224
RFX6 regulatory factor X, 6 -1.43022
SPIN4 spindlin family, member 4 -1.39426
PCDH8 protocadherin 8 -1.39275
SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporter), member 1 -1.39098
TRAF4 TNF receptor-associated factor 4 -1.3867
CUZD1 CUB and zona pellucida-like domains 1 -1.38224
IL18RAP interleukin 18 receptor accessory protein -1.36735
IZUMO1R IZUMO1 receptor, JUNO -1.35801
ADAM20 ADAM metallopeptidase domain 20 -1.35556
PRELID2 PRELI domain containing 2 -1.35445
RBM44 RNA binding motif protein 44 -1.33986
SPACA1 sperm acrosome associated 1 -1.33922
NRTN neurturin -1.33489
SLC13A2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 -1.3344
PATE2 prostate and testis expressed 2 -1.33377
INS insulin -1.3308
BHLHE23 basic helix-loop-helix family, member e23 -1.32091
CHP2 calcineurin-like EF-hand protein 2 -1.29527
GTF2A1 general transcription factor IIA, 1, 19/37kDa -1.28211
FSTL4 follistatin-like 4 -1.27313
UNC93A unc-93 homolog A (C. elegans) -1.27129
C1ORF112 chromosome 1 open reading frame 112 -1.26904
CYSLTR2 cysteinyl leukotriene receptor 2 -1.26163
VIPR1 vasoactive intestinal peptide receptor 1 -1.26054
GPR33 G protein-coupled receptor 33 (gene/pseudogene) -1.2543
ZSCAN5B zinc finger and SCAN domain containing 5B -1.25276
SLC37A1 solute carrier family 37 (glucose-6-phosphate transporter), member 1 -1.25063
CLEC4A C-type lectin domain family 4, member A -1.2496
SELV selenoprotein V -1.24648
SLC17A4 solute carrier family 17, member 4 -1.24591
DPEP2 dipeptidase 2 -1.24391
VAX1 ventral anterior homeobox 1 -1.23657
RNASE11 ribonuclease, RNase A family, 11 (non-active) -1.23339
RGS9BP regulator of G protein signaling 9 binding protein -1.23006
PCDHB5 protocadherin beta 5 -1.22547
GIF gastric intrinsic factor (vitamin B synthesis) -1.21942
CCDC122 coiled-coil domain containing 122 -1.21806
HIPK4 homeodomain interacting protein kinase 4 -1.20712
SLC13A1 solute carrier family 13 (sodium/sulfate symporter), member 1 -1.19927
ALPK1 alpha-kinase 1 -1.19486
ALAS2 5'-aminolevulinate synthase 2 -1.19084
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa -1.18556
RNF212 ring finger protein 212 -1.18234
SRA1 steroid receptor RNA activator 1 -1.17898
OR7C1 olfactory receptor, family 7, subfamily C, member 1 -1.17785
GUF1 GUF1 GTPase homolog (S. cerevisiae) -1.17148
RAMP1 receptor (G protein-coupled) activity modifying protein 1 -1.13878
ACVR2B activin A receptor, type IIB -1.13698
KISS1 KiSS-1 metastasis-suppressor -1.12823
MLIP muscular LMNA-interacting protein -1.12789
LY96 lymphocyte antigen 96 -1.12399
UBE2W ubiquitin-conjugating enzyme E2W (putative) -1.117
PCDHGB4 protocadherin gamma subfamily B, 4 -1.10796
RAB5C RAB5C, member RAS oncogene family -1.1065
RRM2 ribonucleotide reductase M2 -1.10203
ESYT3 extended synaptotagmin-like protein 3 -1.09891
VANGL1 VANGL planar cell polarity protein 1 -1.09569
NR2F2 nuclear receptor subfamily 2, group F, member 2 -1.08985
CABYR calcium binding tyrosine-(Y)-phosphorylation regulated -1.08862
LRP5 low density lipoprotein receptor-related protein 5 -1.08833
PCDHGB1 protocadherin gamma subfamily B, 1 -1.08761
CDON cell adhesion associated, oncogene regulated -1.08659
SPEF2 sperm flagellar 2 -1.08648
TDP1 tyrosyl-DNA phosphodiesterase 1 -1.08604
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 -1.08409
TSGA13 testis specific, 13 -1.08393
CRLS1 cardiolipin synthase 1 -1.08177
DBX2 developing brain homeobox 2 -1.07843
STKLD1 serine/threonine kinase-like domain containing 1 -1.07298
MYBPC3 myosin binding protein C, cardiac -1.06998
OXNAD1 oxidoreductase NAD-binding domain containing 1 -1.06969
ITGA8 integrin, alpha 8 -1.06649
PGM5 phosphoglucomutase 5 -1.0634
TDRD6 tudor domain containing 6 -1.05988
SEC14L3 SEC14-like 3 (S. cerevisiae) -1.05742
MEI4 meiosis-specific 4 homolog (S. cerevisiae) -1.05223
CBR4 carbonyl reductase 4 -1.05178
RMDN3 regulator of microtubule dynamics 3 -1.05112
FBXO47 F-box protein 47 -1.04746
BOLL boule-like RNA-binding protein -1.04685
FAM110D family with sequence similarity 110, member D -1.04463
GPATCH2 G patch domain containing 2 -1.04404
SF3B1 splicing factor 3b, subunit 1, 155kDa -1.04221
ADORA2A adenosine A2a receptor -1.03951
ZNF729 zinc finger protein 729 -1.03935
IL36A interleukin 36, alpha -1.03714
SLC30A7 solute carrier family 30 (zinc transporter), member 7 -1.03642
PCDHGB2 protocadherin gamma subfamily B, 2 -1.033
TSPEAR thrombospondin-type laminin G domain and EAR repeats -1.03284
ARHGEF26 Rho guanine nucleotide exchange factor (GEF) 26 -1.03233
CXORF65 chromosome X open reading frame 65 -1.0275
AWAT1 acyl-CoA wax alcohol acyltransferase 1 -1.02667
DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 -1.02404
USP43 ubiquitin specific peptidase 43 -1.02341
SERP2 stress-associated endoplasmic reticulum protein family member 2 -1.02302
ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 -1.02098
CLRN1 clarin 1 -1.01774
TMEM220 transmembrane protein 220 -1.01699
UGT2B7 UDP glucuronosyltransferase 2 family, polypeptide B7 -1.01572
NDST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 -1.01289
MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) -1.01039
FANCD2 Fanconi anemia, complementation group D2 -1.00832
BSX brain-specific homeobox -1.00716
E2F5 E2F transcription factor 5, p130-binding -1.0061
OPN1SW opsin 1 (cone pigments), short-wave-sensitive -1.00549
SPIB Spi-B transcription factor (Spi-1/PU.1 related) -1.00356
TNIK TRAF2 and NCK interacting kinase -1.00336