r1 basal plate Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
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Genes

155 genes with high or low expression in r1 basal plate relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa 1.67977
C1QB complement component 1, q subcomponent, B chain 1.64232
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 1.55358
S100A9 S100 calcium binding protein A9 1.44996
TSHR thyroid stimulating hormone receptor 1.43797
CDC6 cell division cycle 6 1.39316
FEN1 flap structure-specific endonuclease 1 1.37962
TFF3 trefoil factor 3 (intestinal) 1.37033
RNF152 ring finger protein 152 1.36826
PAFAH1B3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) 1.36236
REG3A regenerating islet-derived 3 alpha 1.34733
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 1.34315
TUFM Tu translation elongation factor, mitochondrial 1.32229
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 1.28598
FGD5 FYVE, RhoGEF and PH domain containing 5 1.27687
TPH2 tryptophan hydroxylase 2 1.26132
PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 1.25668
SPTLC3 serine palmitoyltransferase, long chain base subunit 3 1.23627
MAOA monoamine oxidase A 1.22901
SPX spexin hormone 1.21758
SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 1.21479
ANKK1 ankyrin repeat and kinase domain containing 1 1.2097
TWIST2 twist family bHLH transcription factor 2 1.17923
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 1.17494
ARMCX6 armadillo repeat containing, X-linked 6 1.16957
RRAGA Ras-related GTP binding A 1.1549
TONSL tonsoku-like, DNA repair protein 1.15064
OR4Q3 olfactory receptor, family 4, subfamily Q, member 3 1.14778
CHRNA5 cholinergic receptor, nicotinic, alpha 5 (neuronal) 1.14164
LRRC69 leucine rich repeat containing 69 1.13157
SLC22A3 solute carrier family 22 (organic cation transporter), member 3 1.13102
GJD3 gap junction protein, delta 3, 31.9kDa 1.11541
TTC23L tetratricopeptide repeat domain 23-like 1.1148
ITPKC inositol-trisphosphate 3-kinase C 1.10353
SEC24A SEC24 family member A 1.10285
UMOD uromodulin 1.1005
KRT4 keratin 4, type II 1.09377
RNF111 ring finger protein 111 1.08178
VIPR2 vasoactive intestinal peptide receptor 2 1.0757
NPAS1 neuronal PAS domain protein 1 1.06319
PRDX2 peroxiredoxin 2 1.0574
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha 1.05066
CCL28 chemokine (C-C motif) ligand 28 1.04969
PAX7 paired box 7 1.04906
EMX2 empty spiracles homeobox 2 1.03331
EGFLAM EGF-like, fibronectin type III and laminin G domains 1.0254
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 1.02443
SPAG4 sperm associated antigen 4 1.00316
EYA3 EYA transcriptional coactivator and phosphatase 3 1.00139

low expression

Symbol Name Standardized Value
CLEC4A C-type lectin domain family 4, member A -2.51126
TEX28 testis expressed 28 -2.45617
UNC93A unc-93 homolog A (C. elegans) -2.43251
DYTN dystrotelin -2.41824
MMP21 matrix metallopeptidase 21 -2.31674
NRTN neurturin -2.25443
CCDC175 coiled-coil domain containing 175 -2.0051
RGS9BP regulator of G protein signaling 9 binding protein -1.95141
CCDC122 coiled-coil domain containing 122 -1.86856
UBA1 ubiquitin-like modifier activating enzyme 1 -1.85773
CPA3 carboxypeptidase A3 (mast cell) -1.80523
MAP3K10 mitogen-activated protein kinase kinase kinase 10 -1.7932
IZUMO1R IZUMO1 receptor, JUNO -1.76747
HSCB HscB mitochondrial iron-sulfur cluster co-chaperone -1.72899
RCCD1 RCC1 domain containing 1 -1.71616
PBX1 pre-B-cell leukemia homeobox 1 -1.7026
ADRA2B adrenoceptor alpha 2B -1.69358
FAM162B family with sequence similarity 162, member B -1.65659
LIMK1 LIM domain kinase 1 -1.63025
OXT oxytocin/neurophysin I prepropeptide -1.62606
SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporter), member 1 -1.60963
PTGES3L prostaglandin E synthase 3 (cytosolic)-like -1.59265
ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 -1.58381
CYSLTR2 cysteinyl leukotriene receptor 2 -1.57796
OR7C1 olfactory receptor, family 7, subfamily C, member 1 -1.55355
LYPD8 LY6/PLAUR domain containing 8 -1.53962
SLCO1B3 solute carrier organic anion transporter family, member 1B3 -1.49289
WNT10A wingless-type MMTV integration site family, member 10A -1.47884
GABRR1 gamma-aminobutyric acid (GABA) A receptor, rho 1 -1.44332
SRPK3 SRSF protein kinase 3 -1.44323
SLC22A16 solute carrier family 22 (organic cation/carnitine transporter), member 16 -1.4094
GNG10 guanine nucleotide binding protein (G protein), gamma 10 -1.38372
PDCD1LG2 programmed cell death 1 ligand 2 -1.35841
SLURP1 secreted LY6/PLAUR domain containing 1 -1.35302
PRELID2 PRELI domain containing 2 -1.33986
RAB3D RAB3D, member RAS oncogene family -1.33823
LHX6 LIM homeobox 6 -1.33217
IL22RA1 interleukin 22 receptor, alpha 1 -1.31615
OXNAD1 oxidoreductase NAD-binding domain containing 1 -1.31516
EOMES eomesodermin -1.30242
CCDC57 coiled-coil domain containing 57 -1.30066
RBM44 RNA binding motif protein 44 -1.29438
LOC101929327 -1.28661
SLC2A9 solute carrier family 2 (facilitated glucose transporter), member 9 -1.28229
IL18RAP interleukin 18 receptor accessory protein -1.27856
HUS1B HUS1 checkpoint homolog b (S. pombe) -1.26183
VANGL1 VANGL planar cell polarity protein 1 -1.24634
GFER growth factor, augmenter of liver regeneration -1.24342
RAMP1 receptor (G protein-coupled) activity modifying protein 1 -1.24172
RFX6 regulatory factor X, 6 -1.23672
SLC17A4 solute carrier family 17, member 4 -1.22677
PCDH8 protocadherin 8 -1.22666
AWAT1 acyl-CoA wax alcohol acyltransferase 1 -1.2241
GPR35 G protein-coupled receptor 35 -1.21334
ZNF608 zinc finger protein 608 -1.20355
UGT2B7 UDP glucuronosyltransferase 2 family, polypeptide B7 -1.20297
C5 complement component 5 -1.19163
ZNF580 zinc finger protein 580 -1.1903
C9ORF40 chromosome 9 open reading frame 40 -1.19003
SLC37A1 solute carrier family 37 (glucose-6-phosphate transporter), member 1 -1.17458
LHX2 LIM homeobox 2 -1.16946
CLEC4G C-type lectin domain family 4, member G -1.16826
SAPCD2 suppressor APC domain containing 2 -1.16816
C1ORF210 chromosome 1 open reading frame 210 -1.15486
HOXB3 homeobox B3 -1.14698
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) -1.14251
TAS2R10 taste receptor, type 2, member 10 -1.13683
SPZ1 spermatogenic leucine zipper 1 -1.13268
C4ORF47 chromosome 4 open reading frame 47 -1.12653
GPR33 G protein-coupled receptor 33 (gene/pseudogene) -1.11671
OSMR oncostatin M receptor -1.11437
FOXA3 forkhead box A3 -1.1138
ADAMDEC1 ADAM-like, decysin 1 -1.10758
CYTIP cytohesin 1 interacting protein -1.10121
TNNT2 troponin T type 2 (cardiac) -1.09953
CIB4 calcium and integrin binding family member 4 -1.09883
CBR4 carbonyl reductase 4 -1.09142
GPRC5A G protein-coupled receptor, class C, group 5, member A -1.08944
DNAJC16 DnaJ (Hsp40) homolog, subfamily C, member 16 -1.08171
CUZD1 CUB and zona pellucida-like domains 1 -1.08104
CDON cell adhesion associated, oncogene regulated -1.07803
ANTXRL anthrax toxin receptor-like -1.07304
NDC80 NDC80 kinetochore complex component -1.06955
DPEP2 dipeptidase 2 -1.069
TFPI2 tissue factor pathway inhibitor 2 -1.06827
C16ORF95 chromosome 16 open reading frame 95 -1.06706
PGM5 phosphoglucomutase 5 -1.06691
DBX2 developing brain homeobox 2 -1.05847
CEP112 centrosomal protein 112kDa -1.05824
FDXR ferredoxin reductase -1.05582
ZNF605 zinc finger protein 605 -1.05023
MS4A2 membrane-spanning 4-domains, subfamily A, member 2 -1.04018
TSGA13 testis specific, 13 -1.03922
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase -1.03666
FAM109B family with sequence similarity 109, member B -1.03361
TRPM1 transient receptor potential cation channel, subfamily M, member 1 -1.02458
AMBP alpha-1-microglobulin/bikunin precursor -1.02103
PLCB2 phospholipase C, beta 2 -1.01987
NETO2 neuropilin (NRP) and tolloid (TLL)-like 2 -1.01928
RWDD3 RWD domain containing 3 -1.01897
MED9 mediator complex subunit 9 -1.01371
TRIM6 tripartite motif containing 6 -1.01362
ALPK1 alpha-kinase 1 -1.00788
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa -1.00632
STARD8 StAR-related lipid transfer (START) domain containing 8 -1.00506
MMP27 matrix metallopeptidase 27 -1.00197