plant-type cell wall Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. (Gene Ontology, GO_0009505)
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Genes

147 proteins co-occuring with the plant-type cell wall cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
AGPS alkylglycerone phosphate synthase 2.20818
CABYR calcium binding tyrosine-(Y)-phosphorylation regulated 1.34283
MANBA mannosidase, beta A, lysosomal 1.2921
MLST8 MTOR associated protein, LST8 homolog (S. cerevisiae) 1.17722
GNB1L guanine nucleotide binding protein (G protein), beta polypeptide 1-like 1.10919
FSCB fibrous sheath CABYR binding protein 1.10205
UGDH UDP-glucose 6-dehydrogenase 1.08933
ARAF A-Raf proto-oncogene, serine/threonine kinase 1.00399
LSM4 LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.976619
MEOX2 mesenchyme homeobox 2 0.970331
ALG11 ALG11, alpha-1,2-mannosyltransferase 0.944956
EXT1 exostosin glycosyltransferase 1 0.917177
UXS1 UDP-glucuronate decarboxylase 1 0.898572
IRX5 iroquois homeobox 5 0.894868
MYB v-myb avian myeloblastosis viral oncogene homolog 0.880555
MGAT4C MGAT4 family, member C 0.873647
SCARA3 scavenger receptor class A, member 3 0.86077
SKAP2 src kinase associated phosphoprotein 2 0.834597
MIOX myo-inositol oxygenase 0.807524
GALP galanin-like peptide 0.804313
NDST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 0.797895
IRX6 iroquois homeobox 6 0.764072
IRX1 iroquois homeobox 1 0.754076
ZNF318 zinc finger protein 318 0.744122
POU3F3 POU class 3 homeobox 3 0.738263
SLC44A2 solute carrier family 44 (choline transporter), member 2 0.735115
SLC6A16 solute carrier family 6, member 16 0.73287
EXOC6B exocyst complex component 6B 0.727941
SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 0.722134
SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 0.698223
SLC6A12 solute carrier family 6 (neurotransmitter transporter), member 12 0.683335
LSG1 large 60S subunit nuclear export GTPase 1 0.678978
IRX3 iroquois homeobox 3 0.678108
GUSB glucuronidase, beta 0.665096
SLC6A14 solute carrier family 6 (amino acid transporter), member 14 0.65905
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 0.651299
SLC27A5 solute carrier family 27 (fatty acid transporter), member 5 0.640573
SLC6A20 solute carrier family 6 (proline IMINO transporter), member 20 0.638005
SLC6A17 solute carrier family 6 (neutral amino acid transporter), member 17 0.635868
XYLT2 xylosyltransferase II 0.625632
SLC6A15 solute carrier family 6 (neutral amino acid transporter), member 15 0.62393
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 0.616709
SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 5 0.612048
BDKRB2 bradykinin receptor B2 0.609932
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 0.609086
GLA galactosidase, alpha 0.572994
SND1 staphylococcal nuclease and tudor domain containing 1 0.568416
UGP2 UDP-glucose pyrophosphorylase 2 0.558042
RPLP1 ribosomal protein, large, P1 0.54771
CELA1 chymotrypsin-like elastase family, member 1 0.542764
POU3F2 POU class 3 homeobox 2 0.52716
CFHR1 complement factor H-related 1 0.52675
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 0.525522
SULT4A1 sulfotransferase family 4A, member 1 0.518981
RBMS2 RNA binding motif, single stranded interacting protein 2 0.518165
PTGDR prostaglandin D2 receptor (DP) 0.50635
PANX3 pannexin 3 0.505131
USP4 ubiquitin specific peptidase 4 (proto-oncogene) 0.500258
PANX2 pannexin 2 0.477233
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 0.466799
GYG1 glycogenin 1 0.443689
SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 0.440124
PERP PERP, TP53 apoptosis effector 0.431829
TUBA1C tubulin, alpha 1c 0.426711
GALE UDP-galactose-4-epimerase 0.41612
NMD3 NMD3 ribosome export adaptor 0.404026
MASP2 mannan-binding lectin serine peptidase 2 0.392001
UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) 0.391228
SLC6A6 solute carrier family 6 (neurotransmitter transporter), member 6 0.390455
CYP51A1 cytochrome P450, family 51, subfamily A, polypeptide 1 0.389296
PPAN peter pan homolog (Drosophila) 0.378122
TGM1 transglutaminase 1 0.373899
PAOX polyamine oxidase (exo-N4-amino) 0.37045
STRN striatin, calmodulin binding protein 0.37045
PCTP phosphatidylcholine transfer protein 0.363949
MGAM maltase-glucoamylase 0.359752
KIF15 kinesin family member 15 0.354422
BIK BCL2-interacting killer (apoptosis-inducing) 0.344556
ATXN2 ataxin 2 0.326829
FCN3 ficolin (collagen/fibrinogen domain containing) 3 0.323075
NFYB nuclear transcription factor Y, beta 0.314091
EBF1 early B-cell factor 1 0.311851
INVS inversin 0.307377
NOS3 nitric oxide synthase 3 (endothelial cell) 0.307004
KIFC1 kinesin family member C1 0.302168
VEGFA vascular endothelial growth factor A 0.29994
PTMS parathymosin 0.296601
MLLT1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 0.292527
PEX1 peroxisomal biogenesis factor 1 0.289569
FAM195A family with sequence similarity 195, member A 0.289199
LYST lysosomal trafficking regulator 0.285507
CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 0.282189
CHL1 cell adhesion molecule L1-like 0.280716
ASNS asparagine synthetase (glutamine-hydrolyzing) 0.27998
TUB tubby bipartite transcription factor 0.276304
CWC15 CWC15 spliceosome-associated protein 0.276304
GLB1 galactosidase, beta 1 0.275202
ETFA electron-transfer-flavoprotein, alpha polypeptide 0.2719
AHCY adenosylhomocysteinase 0.260931
KDR kinase insert domain receptor 0.254017
DAND5 DAN domain family member 5, BMP antagonist 0.242076
PRSS1 protease, serine, 1 (trypsin 1) 0.23776
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.229888
IRF6 interferon regulatory factor 6 0.228464
MPG N-methylpurine-DNA glycosylase 0.218914
JMJD6 jumonji domain containing 6 0.212627
HAND1 heart and neural crest derivatives expressed 1 0.200663
CRYGD crystallin, gamma D 0.200328
PANX1 pannexin 1 0.19733
CA8 carbonic anhydrase VIII 0.193719
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.193719
PYCR1 pyrroline-5-carboxylate reductase 1 0.19307
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 0.189857
EXOC7 exocyst complex component 7 0.186397
ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 0.185469
PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 0.185469
SPAG9 sperm associated antigen 9 0.178877
HBA1 hemoglobin, alpha 1 0.176587
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 0.174087
HBA2 hemoglobin, alpha 2 0.172468
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.172468
CEL carboxyl ester lipase 0.169604
RTN4R reticulon 4 receptor 0.1632
LYZ lysozyme 0.161693
TPX2 TPX2, microtubule-associated 0.135666
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.134934
ANXA6 annexin A6 0.134669
ISL1 ISL LIM homeobox 1 0.134385
EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 0.134259
CARD17 caspase recruitment domain family, member 17 0.134067
FLNC filamin C, gamma 0.133976
RHEB Ras homolog enriched in brain 0.133577
ATN1 atrophin 1 0.133536
LGALS7 lectin, galactoside-binding, soluble, 7 0.132992
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.132819
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.132819
COMT catechol-O-methyltransferase 0.132819
MGP matrix Gla protein 0.132017
CSN2 casein beta 0.131986
MAP4 microtubule-associated protein 4 0.131747
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 0.131666
SERPINA4 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4 0.13021
MT-ATP8 ATP synthase F0 subunit 8 0.129523
MNX1 motor neuron and pancreas homeobox 1 0.129444
DNTT DNA nucleotidylexotransferase 0.129345
PI3 peptidase inhibitor 3, skin-derived 0.129164
MATK megakaryocyte-associated tyrosine kinase 0.128431