plant culture Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
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Genes

130 proteins co-occuring with the tissue plant culture in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 2.13418
HPD 4-hydroxyphenylpyruvate dioxygenase 1.30208
SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) 1.13856
LUM lumican 1.1027
CLNK cytokine-dependent hematopoietic cell linker 1.10004
ZFYVE1 zinc finger, FYVE domain containing 1 1.00807
HMGA1 high mobility group AT-hook 1 0.991509
PANX3 pannexin 3 0.978482
GUSB glucuronidase, beta 0.954271
ALDH18A1 aldehyde dehydrogenase 18 family, member A1 0.932337
TECR trans-2,3-enoyl-CoA reductase 0.910093
PANX2 pannexin 2 0.889678
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 0.880358
CASD1 CAS1 domain containing 1 0.849585
SRM spermidine synthase 0.827778
TRAF2 TNF receptor-associated factor 2 0.78938
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.769855
MPG N-methylpurine-DNA glycosylase 0.718292
FDPS farnesyl diphosphate synthase 0.699444
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0.672913
CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 0.668843
ODC1 ornithine decarboxylase 1 0.665182
KLF6 Kruppel-like factor 6 0.663962
DHX9 DEAH (Asp-Glu-Ala-His) box helicase 9 0.652589
B4GALNT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 0.640023
FDFT1 farnesyl-diphosphate farnesyltransferase 1 0.621831
CLEC3B C-type lectin domain family 3, member B 0.621024
DEFB1 defensin, beta 1 0.620621
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 0.607722
PYCR1 pyrroline-5-carboxylate reductase 1 0.595255
PANX1 pannexin 1 0.579617
APCS amyloid P component, serum 0.565232
TAT tyrosine aminotransferase 0.538604
KIR2DL3 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 0.537021
EN1 engrailed homeobox 1 0.517284
IPP intracisternal A particle-promoted polypeptide 0.514924
RB1 retinoblastoma 1 0.510992
KIR2DL1 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 0.491009
SCN2A sodium channel, voltage gated, type II alpha subunit 0.477367
GLUL glutamate-ammonia ligase 0.466111
PNMA2 paraneoplastic Ma antigen 2 0.427636
HBD hemoglobin, delta 0.423436
PFN1 profilin 1 0.397979
WDHD1 WD repeat and HMG-box DNA binding protein 1 0.364513
GGPS1 geranylgeranyl diphosphate synthase 1 0.326798
HBB hemoglobin, beta 0.312595
UGT1A3 UDP glucuronosyltransferase 1 family, polypeptide A3 0.311145
SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 0.30464
CALR calreticulin 0.292079
IFNA2 interferon, alpha 2 0.288514
POR P450 (cytochrome) oxidoreductase 0.287803
UGT1A7 UDP glucuronosyltransferase 1 family, polypeptide A7 0.278251
UGT1A10 UDP glucuronosyltransferase 1 family, polypeptide A10 0.274045
UGT1A5 UDP glucuronosyltransferase 1 family, polypeptide A5 0.273346
UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 0.273346
UGT1A4 UDP glucuronosyltransferase 1 family, polypeptide A4 0.271256
CD9 CD9 molecule 0.267446
COL18A1 collagen, type XVIII, alpha 1 0.257907
UGT1A9 UDP glucuronosyltransferase 1 family, polypeptide A9 0.25457
IGHV3-30 immunoglobulin heavy variable 3-30 0.250627
CAPN1 calpain 1, (mu/I) large subunit 0.232039
UGT1A1 UDP glucuronosyltransferase 1 family, polypeptide A1 0.21883
MGAM maltase-glucoamylase 0.216325
LOX lysyl oxidase 0.21573
SEPT4 septin 4 0.198891
ABCB5 ATP-binding cassette, sub-family B (MDR/TAP), member 5 0.197874
ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 0.197868
RANBP3 RAN binding protein 3 0.196924
PAGE5 P antigen family, member 5 (prostate associated) 0.196899
MGAT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase 0.195463
CYP2C8 cytochrome P450, family 2, subfamily C, polypeptide 8 0.19534
ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 0.195323
CSPG4 chondroitin sulfate proteoglycan 4 0.194567
POLK polymerase (DNA directed) kappa 0.194339
PNMA1 paraneoplastic Ma antigen 1 0.194163
TNFRSF10A tumor necrosis factor receptor superfamily, member 10a 0.193808
UCN2 urocortin 2 0.192892
CDKN2A cyclin-dependent kinase inhibitor 2A 0.192762
CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19 0.191909
MCAM melanoma cell adhesion molecule 0.191807
MLANA melan-A 0.191688
FABP7 fatty acid binding protein 7, brain 0.19132
CYP2C9 cytochrome P450, family 2, subfamily C, polypeptide 9 0.191285
MT2A metallothionein 2A 0.190291
ITGAV integrin, alpha V 0.189632
HIST2H2BF histone cluster 2, H2bf 0.188706
HIST3H2BB histone cluster 3, H2bb 0.188706
HIST1H2BH histone cluster 1, H2bh 0.188694
PDGFA platelet-derived growth factor alpha polypeptide 0.188683
HIST1H2BD histone cluster 1, H2bd 0.18866
HIST1H2BA histone cluster 1, H2ba 0.188545
HIST1H2BC histone cluster 1, H2bc 0.188123
HIST1H2BF histone cluster 1, H2bf 0.188123
CYP1A2 cytochrome P450, family 1, subfamily A, polypeptide 2 0.187942
MC1R melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 0.187095
CRK v-crk avian sarcoma virus CT10 oncogene homolog 0.186977
SLC25A16 solute carrier family 25 (mitochondrial carrier), member 16 0.186641
SRSF1 serine/arginine-rich splicing factor 1 0.186586
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.186559
TYK2 tyrosine kinase 2 0.18642
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.186351
ELAVL1 ELAV like RNA binding protein 1 0.186125
SOX10 SRY (sex determining region Y)-box 10 0.185644
PPIA peptidylprolyl isomerase A (cyclophilin A) 0.185066
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.18505
CXCL8 chemokine (C-X-C motif) ligand 8 0.184972
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.18334
F10 coagulation factor X 0.182901
MITF microphthalmia-associated transcription factor 0.182153
PAX3 paired box 3 0.182153
CCND3 cyclin D3 0.181833
TIMP3 TIMP metallopeptidase inhibitor 3 0.180713
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.180602
BSG basigin (Ok blood group) 0.180218
CDK6 cyclin-dependent kinase 6 0.17994
DKK1 dickkopf WNT signaling pathway inhibitor 1 0.179705
ANXA2 annexin A2 0.179633
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 0.179072
LGALS7 lectin, galactoside-binding, soluble, 7 0.177631
IFNG interferon, gamma 0.177519
LAMP1 lysosomal-associated membrane protein 1 0.176514
SP1 Sp1 transcription factor 0.176031
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.172919
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 0.17258
ACHE acetylcholinesterase (Yt blood group) 0.171282
CYP2D7 cytochrome P450, family 2, subfamily D, polypeptide 7 (gene/pseudogene) 0.169485
BMP7 bone morphogenetic protein 7 0.16926
FN1 fibronectin 1 0.16852
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6 0.168188
MYC v-myc avian myelocytomatosis viral oncogene homolog 0.168046