phagocytic vesicle Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis. (Gene Ontology, GO_0045335)
Similar Terms
Downloads & Tools

Genes

373 proteins co-occuring with the phagocytic vesicle cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
LAMP1 lysosomal-associated membrane protein 1 2.03216
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 1.71125
CTSD cathepsin D 1.54009
ACPP acid phosphatase, prostate 1.52823
SLC11A1 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1 1.51186
MPO myeloperoxidase 1.45081
LAMP2 lysosomal-associated membrane protein 2 1.30658
HLA-B major histocompatibility complex, class I, B 1.2905
EEA1 early endosome antigen 1 1.28463
TLR2 toll-like receptor 2 1.22257
CORO1A coronin, actin binding protein, 1A 1.20653
IRGM immunity-related GTPase family, M 1.17055
ESX1 ESX homeobox 1 1.15979
FTL ferritin, light polypeptide 1.1296
FTH1 ferritin, heavy polypeptide 1 1.12041
MRC1 mannose receptor, C type 1 1.10205
CARD17 caspase recruitment domain family, member 17 1.03929
CD63 CD63 molecule 0.99956
MYD88 myeloid differentiation primary response 88 0.966956
CD4 CD4 molecule 0.94876
PRF1 perforin 1 (pore forming protein) 0.945907
PIK3C3 phosphatidylinositol 3-kinase, catalytic subunit type 3 0.937377
ACTA1 actin, alpha 1, skeletal muscle 0.93596
SYK spleen tyrosine kinase 0.911113
SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 0.891169
RAB5A RAB5A, member RAS oncogene family 0.875488
RAB34 RAB34, member RAS oncogene family 0.863988
KRT83 keratin 83, type II 0.858473
RILP Rab interacting lysosomal protein 0.851124
CTSS cathepsin S 0.849746
CAT catalase 0.840105
ATP12A ATPase, H+/K+ transporting, nongastric, alpha polypeptide 0.83322
ATP4A ATPase, H+/K+ exchanging, alpha polypeptide 0.831843
PI3 peptidase inhibitor 3, skin-derived 0.827712
GUSB glucuronidase, beta 0.817158
DNAH8 dynein, axonemal, heavy chain 8 0.809359
TNF tumor necrosis factor 0.804313
LYZ lysozyme 0.803855
RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) 0.803396
RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 0.79652
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 0.794687
NLRP3 NLR family, pyrin domain containing 3 0.781412
TF transferrin 0.769995
TFRC transferrin receptor 0.768627
NLRC4 NLR family, CARD domain containing 4 0.759069
FCGR2A Fc fragment of IgG, low affinity IIa, receptor (CD32) 0.756345
APOE apolipoprotein E 0.715902
TLR4 toll-like receptor 4 0.715014
TIMD4 T-cell immunoglobulin and mucin domain containing 4 0.714126
EPX eosinophil peroxidase 0.708808
TLR9 toll-like receptor 9 0.694709
HCK HCK proto-oncogene, Src family tyrosine kinase 0.68639
CARD9 caspase recruitment domain family, member 9 0.680719
LTF lactotransferrin 0.678978
PTBP2 polypyrimidine tract binding protein 2 0.673328
FLOT1 flotillin 1 0.673328
IL1B interleukin 1, beta 0.671159
AIM2 absent in melanoma 2 0.663368
RAB20 RAB20, member RAS oncogene family 0.662503
ALB albumin 0.661208
ATG5 autophagy related 5 0.658619
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.650439
CTSL cathepsin L 0.642286
LPO lactoperoxidase 0.626483
CTSB cathepsin B 0.608663
RHO rhodopsin 0.601487
M6PR mannose-6-phosphate receptor (cation dependent) 0.593072
CDC42 cell division cycle 42 0.592232
BECN1 beclin 1, autophagy related 0.584268
SOD2 superoxide dismutase 2, mitochondrial 0.583849
ITGAM integrin, alpha M (complement component 3 receptor 3 subunit) 0.570496
MYO1B myosin IB 0.568416
RAB27A RAB27A, member RAS oncogene family 0.560528
EDA ectodysplasin A 0.551838
MERTK MER proto-oncogene, tyrosine kinase 0.551012
VAMP3 vesicle-associated membrane protein 3 0.54771
TLR7 toll-like receptor 7 0.540706
CD86 CD86 molecule 0.540294
RAB5C RAB5C, member RAS oncogene family 0.533309
ACP2 acid phosphatase 2, lysosomal 0.529208
NIPSNAP3A nipsnap homolog 3A (C. elegans) 0.52225
HTRA1 HtrA serine peptidase 1 0.514493
VAMP8 vesicle-associated membrane protein 8 0.510826
ANXA3 annexin A3 0.508383
CYBA cytochrome b-245, alpha polypeptide 0.504318
TLR6 toll-like receptor 6 0.501476
GPR155 G protein-coupled receptor 155 0.49742
TLR1 toll-like receptor 1 0.490135
SLAMF8 SLAM family member 8 0.487711
CTSG cathepsin G 0.486096
MORN2 MORN repeat containing 2 0.484079
IL31RA interleukin 31 receptor A 0.483676
PLD2 phospholipase D2 0.481258
RAB7A RAB7A, member RAS oncogene family 0.480453
NOS2 nitric oxide synthase 2, inducible 0.476027
CANX calnexin 0.469203
CST9 cystatin 9 (testatin) 0.468401
CD68 CD68 molecule 0.466399
VTI1B vesicle transport through interaction with t-SNAREs 1B 0.462798
SYT5 synaptotagmin V 0.461599
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.460001
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.459602
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.459602
DUOX2 dual oxidase 2 0.459203
TMEM176B transmembrane protein 176B 0.458803
STX4 syntaxin 4 0.45641
SLC34A1 solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 0.454019
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1 0.453223
SRC SRC proto-oncogene, non-receptor tyrosine kinase 0.452825
TLR8 toll-like receptor 8 0.448848
CLEC7A C-type lectin domain family 7, member A 0.448054
ATG7 autophagy related 7 0.446862
STX18 syntaxin 18 0.444878
DUOX1 dual oxidase 1 0.4425
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.442104
MON1B MON1 secretory trafficking family member B 0.441708
DRG1 developmentally regulated GTP binding protein 1 0.430253
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 0.427891
NCF4 neutrophil cytosolic factor 4, 40kDa 0.424745
BPI bactericidal/permeability-increasing protein 0.423174
SYT7 synaptotagmin VII 0.413382
CD1B CD1b molecule 0.409479
NT5E 5'-nucleotidase, ecto (CD73) 0.408309
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 0.405193
SNAP23 synaptosomal-associated protein, 23kDa 0.401304
CR1 complement component (3b/4b) receptor 1 (Knops blood group) 0.39626
VAV1 vav 1 guanine nucleotide exchange factor 0.395873
PLA2G1B phospholipase A2, group IB (pancreas) 0.392775
PLEK pleckstrin 0.391615
ATP6V1G1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 0.386979
BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide 0.383895
RAP2B RAP2B, member of RAS oncogene family 0.381199
ANXA1 annexin A1 0.380814
TLR3 toll-like receptor 3 0.380429
NAIP NLR family, apoptosis inhibitory protein 0.37966
CD1C CD1c molecule 0.378507
NSF N-ethylmaleimide-sensitive factor 0.372366
KIAA0226 KIAA0226 0.367006
SLC48A1 solute carrier family 48 (heme transporter), member 1 0.364331
TTC29 tetratricopeptide repeat domain 29 0.364331
RAB2A RAB2A, member RAS oncogene family 0.363185
LYPD1 LY6/PLAUR domain containing 1 0.359371
CLC Charcot-Leyden crystal galectin 0.355944
TG thyroglobulin 0.354422
HLA-E major histocompatibility complex, class I, E 0.351002
CAMP cathelicidin antimicrobial peptide 0.350622
CALCOCO2 calcium binding and coiled-coil domain 2 0.342664
CYBB cytochrome b-245, beta polypeptide 0.340395
ANXA4 annexin A4 0.338884
RAB22A RAB22A, member RAS oncogene family 0.338128
VPS33B vacuolar protein sorting 33 homolog B (yeast) 0.335864
PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent) 0.333225
CD209 CD209 molecule 0.329837
CSF2 colony stimulating factor 2 (granulocyte-macrophage) 0.326829
GBP5 guanylate binding protein 5 0.326453
SNX9 sorting nexin 9 0.325702
DCTN1 dynactin 1 0.324951
G6PC glucose-6-phosphatase, catalytic subunit 0.32195
FXYD1 FXYD domain containing ion transport regulator 1 0.318579
INPP5D inositol polyphosphate-5-phosphatase, 145kDa 0.318205
DEFA4 defensin, alpha 4, corticostatin 0.31596
KDM5D lysine (K)-specific demethylase 5D 0.31596
SYTL1 synaptotagmin-like 1 0.314465
PLD4 phospholipase D family, member 4 0.313344
DEF6 differentially expressed in FDCP 6 homolog (mouse) 0.309986
ALPPL2 alkaline phosphatase, placental-like 2 0.308122
ALPL alkaline phosphatase, liver/bone/kidney 0.307377
ALPP alkaline phosphatase, placental 0.307004
RAB1B RAB1B, member RAS oncogene family 0.304027
LY75 lymphocyte antigen 75 0.300311
S100A8 S100 calcium binding protein A8 0.299569
C3 complement component 3 0.297342
INPP5B inositol polyphosphate-5-phosphatase, 75kDa 0.296972
ATG13 autophagy related 13 0.29586
IL1A interleukin 1, alpha 0.295489
KCTD7 potassium channel tetramerization domain containing 7 0.294748
VSIG4 V-set and immunoglobulin domain containing 4 0.293637
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.292897
IL10 interleukin 10 0.288091
OSTC oligosaccharyltransferase complex subunit (non-catalytic) 0.287721
STX6 syntaxin 6 0.287352
ANXA2 annexin A2 0.286245
RAPGEF3 Rap guanine nucleotide exchange factor (GEF) 3 0.284769
CTSC cathepsin C 0.27998
NOD2 nucleotide-binding oligomerization domain containing 2 0.279245
CD40 CD40 molecule, TNF receptor superfamily member 5 0.278877
EZR ezrin 0.266042
RAB11A RAB11A, member RAS oncogene family 0.264946
CD80 CD80 molecule 0.26385
FCGR1A Fc fragment of IgG, high affinity Ia, receptor (CD64) 0.260931
NLRP10 NLR family, pyrin domain containing 10 0.256197
IRF3 interferon regulatory factor 3 0.25547
ATP11A ATPase, class VI, type 11A 0.255107
S100A9 S100 calcium binding protein A9 0.255107
BIN1 bridging integrator 1 0.251839
C5 complement component 5 0.251839
CD276 CD276 molecule 0.249302
PTBP1 polypyrimidine tract binding protein 1 0.247854
HVCN1 hydrogen voltage gated channel 1 0.247492
MYO7A myosin VIIA 0.247492
RAP1A RAP1A, member of RAS oncogene family 0.245323
ZNF85 zinc finger protein 85 0.243879
EIF4E1B eukaryotic translation initiation factor 4E family member 1B 0.243879
CCL3 chemokine (C-C motif) ligand 3 0.242797
PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 0.240996
CHM choroideremia (Rab escort protein 1) 0.240636
SAR1A secretion associated, Ras related GTPase 1A 0.240276
RNF19B ring finger protein 19B 0.239916
ARF3 ADP-ribosylation factor 3 0.239557
CERK ceramide kinase 0.239197
BATF3 basic leucine zipper transcription factor, ATF-like 3 0.236324
CPVL carboxypeptidase, vitellogenic-like 0.235607
TMEM173 transmembrane protein 173 0.233817
IRF8 interferon regulatory factor 8 0.232029
LY96 lymphocyte antigen 96 0.228108
FGR FGR proto-oncogene, Src family tyrosine kinase 0.225976
PPP1R12A protein phosphatase 1, regulatory subunit 12A 0.225267
LGALS3 lectin, galactoside-binding, soluble, 3 0.224558
GAPVD1 GTPase activating protein and VPS9 domains 1 0.223497
CD1D CD1d molecule 0.222083
PTPN11 protein tyrosine phosphatase, non-receptor type 11 0.218914
SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal 0.218563
AZU1 azurocidin 1 0.217511
SLC30A7 solute carrier family 30 (zinc transporter), member 7 0.21681
SQSTM1 sequestosome 1 0.21646
ARHGDIA Rho GDP dissociation inhibitor (GDI) alpha 0.214714
MARCKSL1 MARCKS-like 1 0.213322
NLRP4 NLR family, pyrin domain containing 4 0.212974
CDON cell adhesion associated, oncogene regulated 0.21228
MGAM maltase-glucoamylase 0.21124
METTL13 methyltransferase like 13 0.210894
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 0.210203
IL4 interleukin 4 0.206423
ECSIT ECSIT signalling integrator 0.202009
FN1 fibronectin 1 0.198658
PAK1IP1 PAK1 interacting protein 1 0.197993
MYO1E myosin IE 0.196999
NINJ1 ninjurin 1 0.195681
PLA2G10 phospholipase A2, group X 0.195025
MTHFS 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) 0.194698
APEH acylaminoacyl-peptide hydrolase 0.194371
GJB6 gap junction protein, beta 6, 30kDa 0.194045
PLIN2 perilipin 2 0.193719
WDR83 WD repeat domain 83 0.191456
RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) 0.191135
MYO1C myosin IC 0.191135
RBP3 retinol binding protein 3, interstitial 0.190175
CLIC3 chloride intracellular channel 3 0.187646
FAM3C family with sequence similarity 3, member C 0.187333
TIRAP toll-interleukin 1 receptor (TIR) domain containing adaptor protein 0.186397
PPA2 pyrophosphatase (inorganic) 2 0.186397
ELANE elastase, neutrophil expressed 0.186397
GSN gelsolin 0.186087
LIPI lipase, member I 0.185469
ABR active BCR-related 0.184853
PTPRD protein tyrosine phosphatase, receptor type, D 0.182122
STX3 syntaxin 3 0.182122
RAB9A RAB9A, member RAS oncogene family 0.178299
VAV3 vav 3 guanine nucleotide exchange factor 0.178299
MREG melanoregulin 0.176024
DGKB diacylglycerol kinase, beta 90kDa 0.175745
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.174911
RAB1A RAB1A, member RAS oncogene family 0.174911
SGSM3 small G protein signaling modulator 3 0.173003
NLRP6 NLR family, pyrin domain containing 6 0.173003
NBR1 neighbor of BRCA1 gene 1 0.170888
CLEC9A C-type lectin domain family 9, member A 0.16935
PDP1 pyruvate dehyrogenase phosphatase catalytic subunit 1 0.167856
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.166643
FYCO1 FYVE and coiled-coil domain containing 1 0.165
RBKS ribokinase 0.164315
FCGRT Fc fragment of IgG, receptor, transporter, alpha 0.164089
KTN1 kinectin 1 (kinesin receptor) 0.163865
LNPEP leucyl/cystinyl aminopeptidase 0.16342
PPARGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta 0.16342
AQR aquarius intron-binding spliceosomal factor 0.16298
VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 0.16233
NOX1 NADPH oxidase 1 0.16233
EPGN epithelial mitogen 0.161905
CD83 CD83 molecule 0.161905
HLA-DMA major histocompatibility complex, class II, DM alpha 0.159268
SNX33 sorting nexin 33 0.158315
IRF1 interferon regulatory factor 1 0.157578
PTPN3 protein tyrosine phosphatase, non-receptor type 3 0.157397
ATP6V0A1 ATPase, H+ transporting, lysosomal V0 subunit a1 0.156863
CEACAM3 carcinoembryonic antigen-related cell adhesion molecule 3 0.156513
DHFR dihydrofolate reductase 0.142548
RBBP9 retinoblastoma binding protein 9 0.14188
NCBP1 nuclear cap binding protein subunit 1, 80kDa 0.141795
CAPN7 calpain 7 0.141542
NRD1 nardilysin (N-arginine dibasic convertase) 0.141527
RAB11FIP1 RAB11 family interacting protein 1 (class I) 0.139993
ELMO1 engulfment and cell motility 1 0.13981
MEFV Mediterranean fever 0.13976
STAB1 stabilin 1 0.139086
PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 0.13873
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase 0.13646
IFI30 interferon, gamma-inducible protein 30 0.134901
BLVRB biliverdin reductase B 0.134648
ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 0.134246
USF2 upstream transcription factor 2, c-fos interacting 0.13417
B4GALNT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 0.133608
VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) 0.133536
VARS valyl-tRNA synthetase 0.133506
MTO1 mitochondrial tRNA translation optimization 1 0.133173
REEP5 receptor accessory protein 5 0.133078
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 0.133003
HPD 4-hydroxyphenylpyruvate dioxygenase 0.132474
AMPH amphiphysin 0.132338
FANCL Fanconi anemia, complementation group L 0.131482
LGMN legumain 0.131344
EPB41 erythrocyte membrane protein band 4.1 0.131205
STOM stomatin 0.131103
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 0.13087
C7 complement component 7 0.130778
XPNPEP1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble 0.130645
NEXN nexilin (F actin binding protein) 0.130632
AMPD2 adenosine monophosphate deaminase 2 0.130565
PIGB phosphatidylinositol glycan anchor biosynthesis, class B 0.130457
ATG9A autophagy related 9A 0.130429
PTPN6 protein tyrosine phosphatase, non-receptor type 6 0.129985
TAPBP TAP binding protein (tapasin) 0.129872
KCNB1 potassium channel, voltage gated Shab related subfamily B, member 1 0.129611
TPT1 tumor protein, translationally-controlled 1 0.129582
USP9X ubiquitin specific peptidase 9, X-linked 0.129315
TP53INP1 tumor protein p53 inducible nuclear protein 1 0.129041
BEAN1 brain expressed, associated with NEDD4, 1 0.128933
DUT deoxyuridine triphosphatase 0.128824
CTSE cathepsin E 0.12865
KRT9 keratin 9, type I 0.128522
RAB31 RAB31, member RAS oncogene family 0.128377
AKAP13 A kinase (PRKA) anchor protein 13 0.128295
PLOD1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 0.127774
TMPRSS13 transmembrane protease, serine 13 0.127532
DGKD diacylglycerol kinase, delta 130kDa 0.12714
PKN1 protein kinase N1 0.126976
RAB24 RAB24, member RAS oncogene family 0.126884
PGM1 phosphoglucomutase 1 0.126697
HAVCR1 hepatitis A virus cellular receptor 1 0.126621
GZMH granzyme H (cathepsin G-like 2, protein h-CCPX) 0.126507
VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 0.126217
UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked 0.12594
SPTLC2 serine palmitoyltransferase, long chain base subunit 2 0.12586
RAB5B RAB5B, member RAS oncogene family 0.125615
CAST calpastatin 0.125217
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 0.125154
LXN latexin 0.124959
GNPDA1 glucosamine-6-phosphate deaminase 1 0.12485
MRPS7 mitochondrial ribosomal protein S7 0.124517
MMP12 matrix metallopeptidase 12 0.124358
PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 0.124105
SNF8 SNF8, ESCRT-II complex subunit 0.123988
REN renin 0.123964
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.123703
CD1E CD1e molecule 0.123607
TCN1 transcobalamin I (vitamin B12 binding protein, R binder family) 0.123436
MIR210 microRNA 210 0.122986
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 0.122677
IDE insulin-degrading enzyme 0.122625
LARS leucyl-tRNA synthetase 0.122573
CNTN3 contactin 3 (plasmacytoma associated) 0.122335
VSX1 visual system homeobox 1 0.122092
RAB21 RAB21, member RAS oncogene family 0.121706
LAP3 leucine aminopeptidase 3 0.121594
ANXA6 annexin A6 0.121338
ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 0.121105
PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 0.121105
SLC17A5 solute carrier family 17 (acidic sugar transporter), member 5 0.121047
F2R coagulation factor II (thrombin) receptor 0.120899
FSCN1 fascin actin-bundling protein 1 0.12084
IL22 interleukin 22 0.12072
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.120569
ANTXR2 anthrax toxin receptor 2 0.120539