periventricular stratum of isLim Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
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Genes

356 genes with high or low expression in periventricular stratum of isLim relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
EVA1C eva-1 homolog C (C. elegans) 2.30461
HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 2.21165
SPX spexin hormone 2.14481
MAGEB5 melanoma antigen family B5 2.08516
H2BFM H2B histone family, member M 2.0348
PLCE1 phospholipase C, epsilon 1 2.01005
ITGA8 integrin, alpha 8 1.99093
PAX5 paired box 5 1.85617
SHMT2 serine hydroxymethyltransferase 2 (mitochondrial) 1.83368
LRRC43 leucine rich repeat containing 43 1.81791
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 1.79298
C8G complement component 8, gamma polypeptide 1.76943
C19ORF40 chromosome 19 open reading frame 40 1.76234
WDPCP WD repeat containing planar cell polarity effector 1.68197
CCL28 chemokine (C-C motif) ligand 28 1.67228
DNHD1 dynein heavy chain domain 1 1.66761
TPH2 tryptophan hydroxylase 2 1.62975
IBSP integrin-binding sialoprotein 1.61524
NBR1 neighbor of BRCA1 gene 1 1.58769
HSF5 heat shock transcription factor family member 5 1.5571
UGT2A2 UDP glucuronosyltransferase 2 family, polypeptide A2 1.55325
HCRTR1 hypocretin (orexin) receptor 1 1.52808
EXD1 exonuclease 3'-5' domain containing 1 1.52461
STON2 stonin 2 1.49872
CHAT choline O-acetyltransferase 1.49762
HSPE1 heat shock 10kDa protein 1 1.49366
PCDHAC1 protocadherin alpha subfamily C, 1 1.47944
ZNF182 zinc finger protein 182 1.45957
KLK10 kallikrein-related peptidase 10 1.45824
MAP3K2 mitogen-activated protein kinase kinase kinase 2 1.44968
RIMKLB ribosomal modification protein rimK-like family member B 1.44741
FEN1 flap structure-specific endonuclease 1 1.44325
CXCL2 chemokine (C-X-C motif) ligand 2 1.44048
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 1.43952
GJD3 gap junction protein, delta 3, 31.9kDa 1.4337
EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 1.42439
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 1.41418
AIDA axin interactor, dorsalization associated 1.40076
FAM47A family with sequence similarity 47, member A 1.39894
NT5C1A 5'-nucleotidase, cytosolic IA 1.39013
IRX4 iroquois homeobox 4 1.38767
TSR2 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) 1.38717
FAM120C family with sequence similarity 120C 1.3861
GTPBP4 GTP binding protein 4 1.38407
DISP1 dispatched homolog 1 (Drosophila) 1.38193
SMAD9 SMAD family member 9 1.37011
MYBPH myosin binding protein H 1.36049
GSTO2 glutathione S-transferase omega 2 1.3441
KIAA1033 KIAA1033 1.33729
RRM2B ribonucleotide reductase M2 B (TP53 inducible) 1.33513
PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 1.33402
GAP43 growth associated protein 43 1.33169
CCDC17 coiled-coil domain containing 17 1.33032
PRMT2 protein arginine methyltransferase 2 1.32858
STBD1 starch binding domain 1 1.32632
CSTA cystatin A (stefin A) 1.31638
AGR3 anterior gradient 3 1.31026
SLX4IP SLX4 interacting protein 1.30842
EN1 engrailed homeobox 1 1.30186
GIGYF1 GRB10 interacting GYF protein 1 1.29976
GPC5 glypican 5 1.29604
RPS11 ribosomal protein S11 1.28819
S100A13 S100 calcium binding protein A13 1.2823
PAFAH1B3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) 1.27752
GCH1 GTP cyclohydrolase 1 1.27394
IQCA1 IQ motif containing with AAA domain 1 1.26673
TMX1 thioredoxin-related transmembrane protein 1 1.26158
USP34 ubiquitin specific peptidase 34 1.25856
TVP23A trans-golgi network vesicle protein 23 homolog A (S. cerevisiae) 1.25845
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2 1.2555
CD46 CD46 molecule, complement regulatory protein 1.2497
ZCWPW1 zinc finger, CW type with PWWP domain 1 1.24701
TMEM117 transmembrane protein 117 1.24421
DLL1 delta-like 1 (Drosophila) 1.24304
POLR2M polymerase (RNA) II (DNA directed) polypeptide M 1.24224
RDM1 RAD52 motif containing 1 1.24201
LIPT1 lipoyltransferase 1 1.23129
USP39 ubiquitin specific peptidase 39 1.23004
IL12A interleukin 12A 1.22833
LPCAT1 lysophosphatidylcholine acyltransferase 1 1.2258
CASP9 caspase 9, apoptosis-related cysteine peptidase 1.22381
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 1.21633
SLC35A5 solute carrier family 35, member A5 1.21512
ABCB10 ATP-binding cassette, sub-family B (MDR/TAP), member 10 1.21329
CUBN cubilin (intrinsic factor-cobalamin receptor) 1.20448
WIPI2 WD repeat domain, phosphoinositide interacting 2 1.20381
PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 1.20224
SH3GLB2 SH3-domain GRB2-like endophilin B2 1.20136
TTC16 tetratricopeptide repeat domain 16 1.1953
GHDC GH3 domain containing 1.18428
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa 1.17575
CRYGB crystallin, gamma B 1.17467
CCT4 chaperonin containing TCP1, subunit 4 (delta) 1.17052
TMX4 thioredoxin-related transmembrane protein 4 1.16918
CDC7 cell division cycle 7 1.16643
SPCS1 signal peptidase complex subunit 1 homolog (S. cerevisiae) 1.16547
CNTLN centlein, centrosomal protein 1.1633
ZNF773 zinc finger protein 773 1.16238
C9ORF84 chromosome 9 open reading frame 84 1.16081
DNAH14 dynein, axonemal, heavy chain 14 1.16071
FTMT ferritin mitochondrial 1.15762
LARP4 La ribonucleoprotein domain family, member 4 1.15467
PIK3C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha 1.15434
SCRT2 scratch family zinc finger 2 1.15307
INVS inversin 1.1509
MMP27 matrix metallopeptidase 27 1.15039
MCEMP1 mast cell-expressed membrane protein 1 1.15038
GREM2 gremlin 2, DAN family BMP antagonist 1.14933
TECR trans-2,3-enoyl-CoA reductase 1.14641
LRRC46 leucine rich repeat containing 46 1.14484
ARHGEF15 Rho guanine nucleotide exchange factor (GEF) 15 1.14036
SETD4 SET domain containing 4 1.13809
HEXIM2 hexamethylene bis-acetamide inducible 2 1.1378
RAB9B RAB9B, member RAS oncogene family 1.13501
PSMB2 proteasome (prosome, macropain) subunit, beta type, 2 1.13242
SLC39A7 solute carrier family 39 (zinc transporter), member 7 1.12989
DRAP1 DR1-associated protein 1 (negative cofactor 2 alpha) 1.12317
PSMB9 proteasome (prosome, macropain) subunit, beta type, 9 1.12234
PPEF1 protein phosphatase, EF-hand calcium binding domain 1 1.12092
KIDINS220 kinase D-interacting substrate, 220kDa 1.11966
DHX36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 1.11903
IL1R1 interleukin 1 receptor, type I 1.11304
RCAN3 RCAN family member 3 1.11245
SYNGR1 synaptogyrin 1 1.11027
PANX1 pannexin 1 1.10897
CATSPERG catsper channel auxiliary subunit gamma 1.10584
PPP1R32 protein phosphatase 1, regulatory subunit 32 1.10412
TIMM17B translocase of inner mitochondrial membrane 17 homolog B (yeast) 1.10236
PCDHAC2 protocadherin alpha subfamily C, 2 1.10211
MSANTD1 Myb/SANT-like DNA-binding domain containing 1 1.10185
RALYL RALY RNA binding protein-like 1.10137
MAOB monoamine oxidase B 1.10003
CCDC37 coiled-coil domain containing 37 1.09866
LRRC16B leucine rich repeat containing 16B 1.09676
TMEM212 transmembrane protein 212 1.09623
RPL12 ribosomal protein L12 1.09598
MAST2 microtubule associated serine/threonine kinase 2 1.0942
PEG3 paternally expressed 3 1.0903
RPS15A ribosomal protein S15a 1.08822
PSME2 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) 1.0876
CLSTN3 calsyntenin 3 1.08757
AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 1.0852
GYG1 glycogenin 1 1.08433
BATF basic leucine zipper transcription factor, ATF-like 1.07899
SPATA33 spermatogenesis associated 33 1.07575
YTHDC2 YTH domain containing 2 1.07468
TM2D3 TM2 domain containing 3 1.07337
USP35 ubiquitin specific peptidase 35 1.07272
CCT7 chaperonin containing TCP1, subunit 7 (eta) 1.07204
HK1 hexokinase 1 1.06985
GTF2E1 general transcription factor IIE, polypeptide 1, alpha 56kDa 1.06921
C20ORF96 chromosome 20 open reading frame 96 1.06909
PGM1 phosphoglucomutase 1 1.06224
PTOV1 prostate tumor overexpressed 1 1.05813
POFUT1 protein O-fucosyltransferase 1 1.05751
PCSK6 proprotein convertase subtilisin/kexin type 6 1.05647
RAB34 RAB34, member RAS oncogene family 1.05564
RPS8 ribosomal protein S8 1.05474
G6PC3 glucose 6 phosphatase, catalytic, 3 1.05256
DUSP22 dual specificity phosphatase 22 1.05229
AFF4 AF4/FMR2 family, member 4 1.05107
HNF1A HNF1 homeobox A 1.03651
PCDHGC4 protocadherin gamma subfamily C, 4 1.03603
WNT2 wingless-type MMTV integration site family member 2 1.03454
CASKIN1 CASK interacting protein 1 1.03421
C9ORF117 chromosome 9 open reading frame 117 1.03388
BEX1 brain expressed, X-linked 1 1.03274
C2ORF54 chromosome 2 open reading frame 54 1.03266
MYO1E myosin IE 1.03023
ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1 1.02773
VPS51 vacuolar protein sorting 51 homolog (S. cerevisiae) 1.02623
DNAH12 dynein, axonemal, heavy chain 12 1.02444
FAM149A family with sequence similarity 149, member A 1.0238
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 1.02379
PHF1 PHD finger protein 1 1.02354
HYPK huntingtin interacting protein K 1.02271
SBK3 SH3 domain binding kinase family, member 3 1.0222
SQLE squalene epoxidase 1.02195
FCHSD1 FCH and double SH3 domains 1 1.02012
CA9 carbonic anhydrase IX 1.01989
KRTDAP keratinocyte differentiation-associated protein 1.01419
PTPN11 protein tyrosine phosphatase, non-receptor type 11 1.01375
AK7 adenylate kinase 7 1.01111
CD83 CD83 molecule 1.00929
FXR1 fragile X mental retardation, autosomal homolog 1 1.00886
PAQR6 progestin and adipoQ receptor family member VI 1.00707
HECA headcase homolog (Drosophila) 1.00613
DRG1 developmentally regulated GTP binding protein 1 1.00523
CFAP44 cilia and flagella associated protein 44 1.00411
CBFB core-binding factor, beta subunit 1.00239
NMRK2 nicotinamide riboside kinase 2 1.00219
MAPT microtubule-associated protein tau 1.0012

low expression

Symbol Name Standardized Value
MPG N-methylpurine-DNA glycosylase -3.02563
NARFL nuclear prelamin A recognition factor-like -2.61922
MATN2 matrilin 2 -2.26694
SECTM1 secreted and transmembrane 1 -2.14681
C1QTNF7 C1q and tumor necrosis factor related protein 7 -2.0987
MBL2 mannose-binding lectin (protein C) 2, soluble -2.0829
EEFSEC eukaryotic elongation factor, selenocysteine-tRNA-specific -2.05728
FBXO6 F-box protein 6 -2.01877
FAM45A family with sequence similarity 45, member A -2.01636
C11ORF24 chromosome 11 open reading frame 24 -1.92521
TMEM181 transmembrane protein 181 -1.85004
CSTF2T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant -1.82243
C14ORF79 chromosome 14 open reading frame 79 -1.78829
EBP emopamil binding protein (sterol isomerase) -1.72848
DCTPP1 dCTP pyrophosphatase 1 -1.69957
EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 -1.69215
ADAM21 ADAM metallopeptidase domain 21 -1.6581
NPBWR1 neuropeptides B/W receptor 1 -1.65128
BSPRY B-box and SPRY domain containing -1.64501
SPTLC3 serine palmitoyltransferase, long chain base subunit 3 -1.639
RTN4RL1 reticulon 4 receptor-like 1 -1.63118
DAZ2 deleted in azoospermia 2 -1.62938
SERPINA10 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 -1.61574
SURF6 surfeit 6 -1.59392
COX7A1 cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) -1.58869
CABP2 calcium binding protein 2 -1.57322
CYP3A5 cytochrome P450, family 3, subfamily A, polypeptide 5 -1.57052
EXO5 exonuclease 5 -1.54511
CCS copper chaperone for superoxide dismutase -1.53201
C2 complement component 2 -1.52877
BCL7C B-cell CLL/lymphoma 7C -1.52728
RFC4 replication factor C (activator 1) 4, 37kDa -1.4819
F10 coagulation factor X -1.47588
CUZD1 CUB and zona pellucida-like domains 1 -1.44495
TM4SF4 transmembrane 4 L six family member 4 -1.44051
ATP10B ATPase, class V, type 10B -1.43011
YIPF7 Yip1 domain family, member 7 -1.42978
HOXD13 homeobox D13 -1.42923
SULT1B1 sulfotransferase family, cytosolic, 1B, member 1 -1.42675
CINP cyclin-dependent kinase 2 interacting protein -1.41971
ANKRD22 ankyrin repeat domain 22 -1.41582
ATAD2 ATPase family, AAA domain containing 2 -1.41235
APOF apolipoprotein F -1.40489
ALPI alkaline phosphatase, intestinal -1.39068
RILPL2 Rab interacting lysosomal protein-like 2 -1.38461
TIAM2 T-cell lymphoma invasion and metastasis 2 -1.38005
HTR3A 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic -1.37607
YAE1D1 Yae1 domain containing 1 -1.3715
FBP2 fructose-1,6-bisphosphatase 2 -1.36711
TLR6 toll-like receptor 6 -1.36545
CTGF connective tissue growth factor -1.3651
TRIB3 tribbles pseudokinase 3 -1.35927
INHBC inhibin, beta C -1.35675
FXYD5 FXYD domain containing ion transport regulator 5 -1.35456
KRT8 keratin 8, type II -1.35396
SH2D4B SH2 domain containing 4B -1.3519
KLF10 Kruppel-like factor 10 -1.34557
CD96 CD96 molecule -1.34474
SOCS6 suppressor of cytokine signaling 6 -1.33777
SLC44A3 solute carrier family 44, member 3 -1.33332
TDRD3 tudor domain containing 3 -1.33118
GDF9 growth differentiation factor 9 -1.32906
TNFRSF25 tumor necrosis factor receptor superfamily, member 25 -1.30426
ITK IL2-inducible T-cell kinase -1.30197
ADI1 acireductone dioxygenase 1 -1.29483
JMJD8 jumonji domain containing 8 -1.29369
CSRNP2 cysteine-serine-rich nuclear protein 2 -1.28378
TOP3B topoisomerase (DNA) III beta -1.28247
MYBPC2 myosin binding protein C, fast type -1.26513
HABP2 hyaluronan binding protein 2 -1.26005
MS4A2 membrane-spanning 4-domains, subfamily A, member 2 -1.25622
MATN1 matrilin 1, cartilage matrix protein -1.25531
ARL14 ADP-ribosylation factor-like 14 -1.25508
ZDHHC6 zinc finger, DHHC-type containing 6 -1.2545
CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 -1.25208
TSSK2 testis-specific serine kinase 2 -1.25048
ZSCAN20 zinc finger and SCAN domain containing 20 -1.24702
MRGPRX3 MAS-related GPR, member X3 -1.24618
STK3 serine/threonine kinase 3 -1.23491
NDST2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 -1.22193
WBSCR16 Williams-Beuren syndrome chromosome region 16 -1.22038
MROH6 maestro heat-like repeat family member 6 -1.21704
TRDN triadin -1.21622
DNAJB11 DnaJ (Hsp40) homolog, subfamily B, member 11 -1.20932
ABCA12 ATP-binding cassette, sub-family A (ABC1), member 12 -1.20721
C19ORF25 chromosome 19 open reading frame 25 -1.20355
NAPEPLD N-acyl phosphatidylethanolamine phospholipase D -1.18945
DEGS2 delta(4)-desaturase, sphingolipid 2 -1.1816
TBX10 T-box 10 -1.17826
MST1R macrophage stimulating 1 receptor -1.17315
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase -1.16585
HAUS1 HAUS augmin-like complex, subunit 1 -1.15494
LYG1 lysozyme G-like 1 -1.15418
FAM109B family with sequence similarity 109, member B -1.15015
DPT dermatopontin -1.14151
VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) -1.13933
ANXA13 annexin A13 -1.12977
MMP19 matrix metallopeptidase 19 -1.11973
OR4D5 olfactory receptor, family 4, subfamily D, member 5 -1.11893
KDF1 keratinocyte differentiation factor 1 -1.1181
CCHCR1 coiled-coil alpha-helical rod protein 1 -1.1115
RSG1 REM2 and RAB-like small GTPase 1 -1.11063
BAIAP2L1 BAI1-associated protein 2-like 1 -1.10581
HGFAC HGF activator -1.10031
GRAP2 GRB2-related adaptor protein 2 -1.09864
PRSS23 protease, serine, 23 -1.09822
C6ORF15 chromosome 6 open reading frame 15 -1.09703
GPBAR1 G protein-coupled bile acid receptor 1 -1.09465
L3HYPDH L-3-hydroxyproline dehydratase (trans-) -1.09279
C3ORF30 chromosome 3 open reading frame 30 -1.09035
MED26 mediator complex subunit 26 -1.09028
PTGES3L prostaglandin E synthase 3 (cytosolic)-like -1.08971
IL17RE interleukin 17 receptor E -1.08625
PFAS phosphoribosylformylglycinamidine synthase -1.08402
FOXR1 forkhead box R1 -1.08332
CCL22 chemokine (C-C motif) ligand 22 -1.07892
FBXO8 F-box protein 8 -1.07798
IGFBP6 insulin-like growth factor binding protein 6 -1.07794
TICAM1 toll-like receptor adaptor molecule 1 -1.07757
LCN8 lipocalin 8 -1.07742
EHD2 EH-domain containing 2 -1.07683
UGT2A3 UDP glucuronosyltransferase 2 family, polypeptide A3 -1.07357
PCIF1 PDX1 C-terminal inhibiting factor 1 -1.07348
MMP23B matrix metallopeptidase 23B -1.07111
MPO myeloperoxidase -1.06915
SERP1 stress-associated endoplasmic reticulum protein 1 -1.06909
PEAR1 platelet endothelial aggregation receptor 1 -1.06705
LECT2 leukocyte cell-derived chemotaxin 2 -1.06464
FANCB Fanconi anemia, complementation group B -1.06454
TCL1A T-cell leukemia/lymphoma 1A -1.06352
IL2RB interleukin 2 receptor, beta -1.06337
CTNND1 catenin (cadherin-associated protein), delta 1 -1.05637
LYRM2 LYR motif containing 2 -1.05622
HS1BP3 HCLS1 binding protein 3 -1.05577
CCDC14 coiled-coil domain containing 14 -1.0552
TMPRSS11F transmembrane protease, serine 11F -1.04922
LCA5L Leber congenital amaurosis 5-like -1.04881
FAM171A2 family with sequence similarity 171, member A2 -1.04799
LYZL1 lysozyme-like 1 -1.04397
PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) -1.04118
WDR86 WD repeat domain 86 -1.04079
ABHD17C abhydrolase domain containing 17C -1.03944
CBX2 chromobox homolog 2 -1.03863
MBTPS2 membrane-bound transcription factor peptidase, site 2 -1.03363
CCRL2 chemokine (C-C motif) receptor-like 2 -1.03133
UBE2W ubiquitin-conjugating enzyme E2W (putative) -1.03079
DCBLD1 discoidin, CUB and LCCL domain containing 1 -1.03072
FAM71E2 family with sequence similarity 71, member E2 -1.02762
RIN2 Ras and Rab interactor 2 -1.02505
IL6R interleukin 6 receptor -1.02187
TMEM196 transmembrane protein 196 -1.02169
G2E3 G2/M-phase specific E3 ubiquitin protein ligase -1.02095
INMT indolethylamine N-methyltransferase -1.01979
GCAT glycine C-acetyltransferase -1.01832
FANCE Fanconi anemia, complementation group E -1.0166
PLEC plectin -1.01348
NEURL4 neuralized E3 ubiquitin protein ligase 4 -1.01262
INF2 inverted formin, FH2 and WH2 domain containing -1.01131
SLAMF7 SLAM family member 7 -1.01073
REEP6 receptor accessory protein 6 -1.0083
APOPT1 apoptogenic 1, mitochondrial -1.00807
CTSK cathepsin K -1.00428
TAGLN2 transgelin 2 -1.00335
ISX intestine-specific homeobox -1.00262