nucleotide-excision repair complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Any complex formed of proteins that act in nucleotide-excision repair. (Gene Ontology, GO_0000109)
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Genes

82 proteins co-occuring with the nucleotide-excision repair complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
ERCC4 excision repair cross-complementation group 4 2.47687
ERCC1 excision repair cross-complementation group 1 2.34482
XPC xeroderma pigmentosum, complementation group C 1.99405
MUS81 MUS81 structure-specific endonuclease subunit 1.98337
ERCC5 excision repair cross-complementation group 5 1.84088
PRPH peripherin 1.78452
SLX4 SLX4 structure-specific endonuclease subunit 1.72619
XPA xeroderma pigmentosum, complementation group A 1.4904
RAD23B RAD23 homolog B (S. cerevisiae) 1.47118
C9ORF84 chromosome 9 open reading frame 84 1.25285
DCLRE1A DNA cross-link repair 1A 1.23348
CETN2 centrin, EF-hand protein, 2 1.10358
FEN1 flap structure-specific endonuclease 1 1.04331
FAN1 FANCD2/FANCI-associated nuclease 1 1.01288
MSH3 mutS homolog 3 0.895794
RAD52 RAD52 homolog (S. cerevisiae) 0.887936
EME2 essential meiotic structure-specific endonuclease subunit 2 0.85342
TDP1 tyrosyl-DNA phosphodiesterase 1 0.843778
ALKBH3 alkB, alkylation repair homolog 3 (E. coli) 0.839187
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 0.749546
DDB1 damage-specific DNA binding protein 1, 127kDa 0.747285
ERCC2 excision repair cross-complementation group 2 0.745477
FANCD2 Fanconi anemia, complementation group D2 0.698663
ALKBH1 alkB, alkylation repair homolog 1 (E. coli) 0.633305
XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3 0.626483
RPA4 replication protein A4, 30kDa 0.604862
OGG1 8-oxoguanine DNA glycosylase 0.594753
RAD51 RAD51 recombinase 0.580504
EME1 essential meiotic structure-specific endonuclease 1 0.543587
ASCC3 activating signal cointegrator 1 complex subunit 3 0.54194
C19ORF40 chromosome 19 open reading frame 40 0.52716
MSH2 mutS homolog 2 0.507163
GEN1 GEN1 Holliday junction 5' flap endonuclease 0.502288
KNTC1 kinetochore associated 1 0.424745
DTYMK deoxythymidylate kinase (thymidylate kinase) 0.415337
NEFM neurofilament, medium polypeptide 0.393162
TDG thymine-DNA glycosylase 0.385436
RMI1 RecQ mediated genome instability 1 0.383124
XRCC2 X-ray repair complementing defective repair in Chinese hamster cells 2 0.383124
CCNH cyclin H 0.368153
TERF2 telomeric repeat binding factor 2 0.355563
PHGDH phosphoglycerate dehydrogenase 0.343042
TOP1 topoisomerase (DNA) I 0.326078
GCLM glutamate-cysteine ligase, modifier subunit 0.32195
S100B S100 calcium binding protein B 0.312597
RAD50 RAD50 homolog (S. cerevisiae) 0.30626
KLF1 Kruppel-like factor 1 (erythroid) 0.302912
FANCI Fanconi anemia, complementation group I 0.29994
SOX2 SRY (sex determining region Y)-box 2 0.293637
ATR ATR serine/threonine kinase 0.291047
MPG N-methylpurine-DNA glycosylase 0.285138
FANCM Fanconi anemia, complementation group M 0.281821
REV1 REV1, polymerase (DNA directed) 0.281821
DUT deoxyuridine triphosphatase 0.26239
MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 0.250389
POLL polymerase (DNA directed), lambda 0.235249
MEA1 male-enhanced antigen 1 0.233101
UBE2N ubiquitin-conjugating enzyme E2N 0.213669
OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 0.212974
RRM1 ribonucleotide reductase M1 0.21124
TOPBP1 topoisomerase (DNA) II binding protein 1 0.198658
EXO1 exonuclease 1 0.189539
GATA2 GATA binding protein 2 0.18516
CDK7 cyclin-dependent kinase 7 0.172735
NOTCH2NL notch 2 N-terminal like 0.170888
RPA2 replication protein A2, 32kDa 0.169099
NOTCH2 notch 2 0.166884
GADD45A growth arrest and DNA-damage-inducible, alpha 0.163865
LIG1 ligase I, DNA, ATP-dependent 0.159074
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 0.127186
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.125822
GCLC glutamate-cysteine ligase, catalytic subunit 0.125387
HMOX1 heme oxygenase 1 0.124984
SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 0.123665
ATP11A ATPase, class VI, type 11A 0.1221
EEF2 eukaryotic translation elongation factor 2 0.119
IL3 interleukin 3 0.118188
CP ceruloplasmin (ferroxidase) 0.117007
HMGB1 high mobility group box 1 0.112381
UNG uracil-DNA glycosylase 0.102906
H2AFX H2A histone family, member X 0.10166
TOP3A topoisomerase (DNA) III alpha 0.100957