nuclei Gene Set

Dataset Phosphosite Textmining Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

140 proteins co-occuring with the biological term nuclei in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.

Symbol Name
ACACA acetyl-CoA carboxylase alpha
ADD1 adducin 1 (alpha)
ADD2 adducin 2 (beta)
AKT1 v-akt murine thymoma viral oncogene homolog 1
ANAPC1 anaphase promoting complex subunit 1
APP amyloid beta (A4) precursor protein
ARFGEF1 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)
ATF2 activating transcription factor 2
ATF4 activating transcription factor 4
ATXN1 ataxin 1
BAD BCL2-associated agonist of cell death
BUB3 BUB3 mitotic checkpoint protein
CASP9 caspase 9, apoptosis-related cysteine peptidase
CDC25C cell division cycle 25C
CDC6 cell division cycle 6
CDK1 cyclin-dependent kinase 1
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CEBPB CCAAT/enhancer binding protein (C/EBP), beta
CFL1 cofilin 1 (non-muscle)
CHEK1 checkpoint kinase 1
CHEK2 checkpoint kinase 2
CIZ1 CDKN1A interacting zinc finger protein 1
COIL coilin
CREB1 cAMP responsive element binding protein 1
CREM cAMP responsive element modulator
CRYAB crystallin, alpha B
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5
DMTN dematin actin binding protein
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A
EEF1A1 eukaryotic translation elongation factor 1 alpha 1
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1
EIF6 eukaryotic translation initiation factor 6
ELK1 ELK1, member of ETS oncogene family
ESR1 estrogen receptor 1
FOSL2 FOS-like antigen 2
FOXO1 forkhead box O1
FOXO3 forkhead box O3
FZR1 fizzy/cell division cycle 20 related 1 (Drosophila)
GABPA GA binding protein transcription factor, alpha subunit 60kDa
GOLGA2 golgin A2
GSK3A glycogen synthase kinase 3 alpha
GSK3B glycogen synthase kinase 3 beta
H2AFX H2A histone family, member X
H3F3B H3 histone, family 3B (H3.3B)
HDAC4 histone deacetylase 4
HDAC5 histone deacetylase 5
HDAC9 histone deacetylase 9
HIST1H1C histone cluster 1, H1c
HIST1H3A histone cluster 1, H3a
HIST3H2BA histone cluster 3, H2ba, pseudogene
HMGN1 high mobility group nucleosome binding domain 1
HMGN2 high mobility group nucleosomal binding domain 2
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
HSPB6 heat shock protein, alpha-crystallin-related, B6
HTT huntingtin
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
IFI16 interferon, gamma-inducible protein 16
JUN jun proto-oncogene
KDR kinase insert domain receptor
LDLRAP1 low density lipoprotein receptor adaptor protein 1
LIPE lipase, hormone-sensitive
MAF1 MAF1 homolog (S. cerevisiae)
MAP2K1 mitogen-activated protein kinase kinase 1
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MAPK8 mitogen-activated protein kinase 8
MAPT microtubule-associated protein tau
MARCKS myristoylated alanine-rich protein kinase C substrate
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MDM4 MDM4, p53 regulator
MECP2 methyl CpG binding protein 2
MIP major intrinsic protein of lens fiber
MPLKIP M-phase specific PLK1 interacting protein
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MYL12B myosin, light chain 12B, regulatory
MYOZ2 myozenin 2
NACA nascent polypeptide-associated complex alpha subunit
NCAPD3 non-SMC condensin II complex, subunit D3
NEK9 NIMA-related kinase 9
NEUROD1 neuronal differentiation 1
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NR1I2 nuclear receptor subfamily 1, group I, member 2
NUP210 nucleoporin 210kDa
NUP98 nucleoporin 98kDa
PDPK1 3-phosphoinositide dependent protein kinase 1
PECAM1 platelet/endothelial cell adhesion molecule 1
PGR progesterone receptor
PKN1 protein kinase N1
PLA2G4A phospholipase A2, group IVA (cytosolic, calcium-dependent)
PLN phospholamban
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
PPP1R14A protein phosphatase 1, regulatory (inhibitor) subunit 14A
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit
PRKCI protein kinase C, iota
PRKD1 protein kinase D1
PRPF19 pre-mRNA processing factor 19
PTK2 protein tyrosine kinase 2
PTPN6 protein tyrosine phosphatase, non-receptor type 6
RASGRF1 Ras protein-specific guanine nucleotide-releasing factor 1
RB1 retinoblastoma 1
RELA v-rel avian reticuloendotheliosis viral oncogene homolog A
RELB v-rel avian reticuloendotheliosis viral oncogene homolog B
RIOK2 RIO kinase 2
RPS6 ribosomal protein S6
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1
RPTOR regulatory associated protein of MTOR, complex 1
RSC1A1 regulatory solute carrier protein, family 1, member 1
RYR2 ryanodine receptor 2 (cardiac)
S100A11 S100 calcium binding protein A11
SET SET nuclear proto-oncogene
SHC1 SHC (Src homology 2 domain containing) transforming protein 1
SIK1 salt-inducible kinase 1
SLC9A3R1 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1
SMAD2 SMAD family member 2
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SP1 Sp1 transcription factor
SRC SRC proto-oncogene, non-receptor tyrosine kinase
STAT1 signal transducer and activator of transcription 1, 91kDa
STAT2 signal transducer and activator of transcription 2, 113kDa
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STAT5A signal transducer and activator of transcription 5A
STK17B serine/threonine kinase 17b
SUDS3 suppressor of defective silencing 3 homolog (S. cerevisiae)
TARDBP TAR DNA binding protein
TNP2 transition protein 2 (during histone to protamine replacement)
TOP2A topoisomerase (DNA) II alpha 170kDa
TP53 tumor protein p53
TP73 tumor protein p73
TPD52 tumor protein D52
TPT1 tumor protein, translationally-controlled 1
TRPV4 transient receptor potential cation channel, subfamily V, member 4
TSC2 tuberous sclerosis 2
WWOX WW domain containing oxidoreductase
YAP1 Yes-associated protein 1
ZFP36 ZFP36 ring finger protein