m1 (rostral) midbrain tegmentum Gene Set

Dataset Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles
Category transcriptomics
Type tissue
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Genes

200 genes with high or low expression in m1 (rostral) midbrain tegmentum relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.

high expression

Symbol Name Standardized Value
SLC9B2 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 2.16401
SLC37A2 solute carrier family 37 (glucose-6-phosphate transporter), member 2 2.04198
EXD1 exonuclease 3'-5' domain containing 1 1.83377
BCAS1 breast carcinoma amplified sequence 1 1.74329
FAM169A family with sequence similarity 169, member A 1.72958
CLPTM1L CLPTM1-like 1.65763
TUFM Tu translation elongation factor, mitochondrial 1.64906
GLTPD2 glycolipid transfer protein domain containing 2 1.60233
MBOAT1 membrane bound O-acyltransferase domain containing 1 1.59858
TEDDM1 transmembrane epididymal protein 1 1.59713
BVES blood vessel epicardial substance 1.49954
DNAH8 dynein, axonemal, heavy chain 8 1.4718
EN1 engrailed homeobox 1 1.44027
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 1.4112
IL1RL1 interleukin 1 receptor-like 1 1.40352
ALDH1A1 aldehyde dehydrogenase 1 family, member A1 1.39981
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2 1.38583
CHRNB3 cholinergic receptor, nicotinic, beta 3 (neuronal) 1.37712
AWAT2 acyl-CoA wax alcohol acyltransferase 2 1.36205
FOXA1 forkhead box A1 1.34643
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 1.32756
KLF11 Kruppel-like factor 11 1.31998
CDC6 cell division cycle 6 1.31237
MRPL21 mitochondrial ribosomal protein L21 1.29456
CHDH choline dehydrogenase 1.28322
LIX1 Lix1 homolog (chicken) 1.28297
LRRC61 leucine rich repeat containing 61 1.27789
POSTN periostin, osteoblast specific factor 1.26241
NTSR1 neurotensin receptor 1 (high affinity) 1.25027
CYP2F1 cytochrome P450, family 2, subfamily F, polypeptide 1 1.24433
DDC dopa decarboxylase (aromatic L-amino acid decarboxylase) 1.22723
PTGER2 prostaglandin E receptor 2 (subtype EP2), 53kDa 1.22054
SLC46A2 solute carrier family 46, member 2 1.21545
POC1B POC1 centriolar protein B 1.19453
GUCY2C guanylate cyclase 2C 1.18593
BBS4 Bardet-Biedl syndrome 4 1.1742
C8ORF76 chromosome 8 open reading frame 76 1.17399
GLYCTK glycerate kinase 1.1562
C1QL2 complement component 1, q subcomponent-like 2 1.15451
XRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3 1.14671
THADA thyroid adenoma associated 1.14387
FGFR1OP FGFR1 oncogene partner 1.14042
MOS v-mos Moloney murine sarcoma viral oncogene homolog 1.13674
APOC4 apolipoprotein C-IV 1.13153
ISL2 ISL LIM homeobox 2 1.12995
MPL MPL proto-oncogene, thrombopoietin receptor 1.1296
SHD Src homology 2 domain containing transforming protein D 1.12915
CCDC89 coiled-coil domain containing 89 1.12829
SPIN4 spindlin family, member 4 1.12136
SLC13A2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 1.11314
KIF3A kinesin family member 3A 1.10655
NTN1 netrin 1 1.10573
DNAJC13 DnaJ (Hsp40) homolog, subfamily C, member 13 1.09543
MINOS1 mitochondrial inner membrane organizing system 1 1.08574
SLC45A1 solute carrier family 45, member 1 1.08438
NSUN4 NOP2/Sun domain family, member 4 1.07956
GCH1 GTP cyclohydrolase 1 1.07496
INVS inversin 1.05947
GHSR growth hormone secretagogue receptor 1.05594
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 1.05505
RBPJ recombination signal binding protein for immunoglobulin kappa J region 1.05458
LRRC24 leucine rich repeat containing 24 1.0507
PRSS21 protease, serine, 21 (testisin) 1.02576
NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 1.0184
CLIC6 chloride intracellular channel 6 1.01438
CSNK1G3 casein kinase 1, gamma 3 1.01097
NLRP12 NLR family, pyrin domain containing 12 1.00777
IQCJ IQ motif containing J 1.00667
MBD5 methyl-CpG binding domain protein 5 1.00369
EIF3L eukaryotic translation initiation factor 3, subunit L 1.00265
COASY CoA synthase 1.0021
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) 1.0019
KCNS3 potassium voltage-gated channel, modifier subfamily S, member 3 1.00175

low expression

Symbol Name Standardized Value
CLEC4A C-type lectin domain family 4, member A -2.26198
G2E3 G2/M-phase specific E3 ubiquitin protein ligase -2.19267
PUS3 pseudouridylate synthase 3 -2.16213
GPRC5A G protein-coupled receptor, class C, group 5, member A -2.14843
HOXB3 homeobox B3 -2.12736
TEX28 testis expressed 28 -1.99262
POLR2G polymerase (RNA) II (DNA directed) polypeptide G -1.9767
GNA14 guanine nucleotide binding protein (G protein), alpha 14 -1.96702
SYT5 synaptotagmin V -1.94587
PLCB2 phospholipase C, beta 2 -1.88369
FAM26D family with sequence similarity 26, member D -1.84544
STIL SCL/TAL1 interrupting locus -1.76819
KCNK4 potassium channel, two pore domain subfamily K, member 4 -1.75054
MZF1 myeloid zinc finger 1 -1.72804
LY96 lymphocyte antigen 96 -1.71145
TMEM52 transmembrane protein 52 -1.67332
IL18RAP interleukin 18 receptor accessory protein -1.67146
DUSP23 dual specificity phosphatase 23 -1.66792
S100A13 S100 calcium binding protein A13 -1.65545
EEF2KMT eukaryotic elongation factor 2 lysine methyltransferase -1.64974
GNRH1 gonadotropin-releasing hormone 1 (luteinizing-releasing hormone) -1.59895
HSCB HscB mitochondrial iron-sulfur cluster co-chaperone -1.55571
GOLGA4 golgin A4 -1.54989
CCND2 cyclin D2 -1.54541
GLIPR2 GLI pathogenesis-related 2 -1.52483
SLC39A2 solute carrier family 39 (zinc transporter), member 2 -1.51983
TTC9B tetratricopeptide repeat domain 9B -1.50874
INHBE inhibin, beta E -1.50023
GKN1 gastrokine 1 -1.49124
HUS1B HUS1 checkpoint homolog b (S. pombe) -1.48182
RBM44 RNA binding motif protein 44 -1.47817
PTPRR protein tyrosine phosphatase, receptor type, R -1.45265
CAPG capping protein (actin filament), gelsolin-like -1.42925
C6ORF15 chromosome 6 open reading frame 15 -1.42623
LPPR1 lipid phosphate phosphatase-related protein type 1 -1.4135
TMEM215 transmembrane protein 215 -1.4115
SHC4 SHC (Src homology 2 domain containing) family, member 4 -1.41013
RNF20 ring finger protein 20, E3 ubiquitin protein ligase -1.40542
GLOD5 glyoxalase domain containing 5 -1.39209
CIB1 calcium and integrin binding 1 (calmyrin) -1.3907
TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 -1.37032
FNDC3B fibronectin type III domain containing 3B -1.35983
TNS4 tensin 4 -1.34996
MESP1 mesoderm posterior basic helix-loop-helix transcription factor 1 -1.34419
MYO1E myosin IE -1.33396
FGF17 fibroblast growth factor 17 -1.32893
PCDHA13 protocadherin alpha 13 -1.31691
SLC51B solute carrier family 51, beta subunit -1.31401
SRSF11 serine/arginine-rich splicing factor 11 -1.31144
TAS2R31 taste receptor, type 2, member 31 -1.31001
IL6 interleukin 6 -1.28416
CXORF65 chromosome X open reading frame 65 -1.27876
SKA1 spindle and kinetochore associated complex subunit 1 -1.27332
TCP11X2 t-complex 11 family, X-linked 2 -1.26288
TCTN2 tectonic family member 2 -1.25617
UBE2E1 ubiquitin-conjugating enzyme E2E 1 -1.25162
CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 -1.24979
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -1.24877
COX18 COX18 cytochrome c oxidase assembly factor -1.24528
CEP112 centrosomal protein 112kDa -1.24171
ZNF408 zinc finger protein 408 -1.24059
TNIK TRAF2 and NCK interacting kinase -1.24018
C10ORF90 chromosome 10 open reading frame 90 -1.23885
SELENBP1 selenium binding protein 1 -1.23014
COX7A1 cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) -1.21923
SLC10A5 solute carrier family 10, member 5 -1.21684
AP1S2 adaptor-related protein complex 1, sigma 2 subunit -1.21045
HTR7 5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled -1.20483
STRC stereocilin -1.2023
GPR149 G protein-coupled receptor 149 -1.19562
MATN3 matrilin 3 -1.18634
TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa -1.18556
BAG4 BCL2-associated athanogene 4 -1.1754
ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 -1.17508
TRAT1 T cell receptor associated transmembrane adaptor 1 -1.16143
C1ORF162 chromosome 1 open reading frame 162 -1.16098
SLCO4C1 solute carrier organic anion transporter family, member 4C1 -1.15677
SLC2A9 solute carrier family 2 (facilitated glucose transporter), member 9 -1.15207
PKP3 plakophilin 3 -1.14987
TRIP6 thyroid hormone receptor interactor 6 -1.14229
SLURP1 secreted LY6/PLAUR domain containing 1 -1.13848
FOXR1 forkhead box R1 -1.1278
AXIN2 axin 2 -1.12465
OXNAD1 oxidoreductase NAD-binding domain containing 1 -1.12322
CSTA cystatin A (stefin A) -1.12278
ACBD7 acyl-CoA binding domain containing 7 -1.12164
GHRH growth hormone releasing hormone -1.121
SRPK3 SRSF protein kinase 3 -1.10144
MGAT4A mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A -1.10126
MEIOB meiosis specific with OB domains -1.09591
ARL5B ADP-ribosylation factor-like 5B -1.09551
DNAH14 dynein, axonemal, heavy chain 14 -1.09422
DTX2 deltex 2, E3 ubiquitin ligase -1.08831
OSMR oncostatin M receptor -1.08773
BTNL2 butyrophilin-like 2 -1.08751
IFI44L interferon-induced protein 44-like -1.08355
HOXD12 homeobox D12 -1.08103
OR9Q1 olfactory receptor, family 9, subfamily Q, member 1 -1.08072
LILRB4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 -1.07696
SYCE1 synaptonemal complex central element protein 1 -1.07598
FOXA3 forkhead box A3 -1.07591
OR7C1 olfactory receptor, family 7, subfamily C, member 1 -1.06844
OR4C45 olfactory receptor, family 4, subfamily C, member 45 -1.0683
ZDHHC18 zinc finger, DHHC-type containing 18 -1.06663
ZDHHC23 zinc finger, DHHC-type containing 23 -1.05999
TRPV2 transient receptor potential cation channel, subfamily V, member 2 -1.05975
MCM6 minichromosome maintenance complex component 6 -1.05951
SSMEM1 serine-rich single-pass membrane protein 1 -1.05073
STK17B serine/threonine kinase 17b -1.04994
CCDC122 coiled-coil domain containing 122 -1.04852
INS insulin -1.04746
PARD3B par-3 family cell polarity regulator beta -1.04605
FAM46D family with sequence similarity 46, member D -1.04091
AP4E1 adaptor-related protein complex 4, epsilon 1 subunit -1.03866
GATC glutamyl-tRNA(Gln) amidotransferase, subunit C -1.03392
CATSPER1 cation channel, sperm associated 1 -1.03381
LHX6 LIM homeobox 6 -1.02904
GRAP GRB2-related adaptor protein -1.02773
TCTE1 t-complex-associated-testis-expressed 1 -1.02625
SYCP3 synaptonemal complex protein 3 -1.01673
TNFSF15 tumor necrosis factor (ligand) superfamily, member 15 -1.01411
IQCF5 IQ motif containing F5 -1.01277
GNA12 guanine nucleotide binding protein (G protein) alpha 12 -1.01235
ISLR2 immunoglobulin superfamily containing leucine-rich repeat 2 -1.00588
SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporter), member 1 -1.0052
PTH parathyroid hormone -1.00331
GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 -1.00094