lymphoma Gene Set

Dataset Phosphosite Textmining Biological Term Annotations
Category structural or functional annotations
Type biological term
Description A malignant (clonal) proliferation of B- lymphocytes or T- lymphocytes which involves the lymph nodes, bone marrow and/or extranodal sites. This category includes Non-Hodgkin lymphomas and Hodgkin lymphomas.|A cancer that affects lymphocytes that reside in the lymphatic system and in blood-forming organs.|A general term for various neoplastic diseases of the lymphoid tissue.|Any of a group of malignant tumors of lymphoid tissue that differ from HODGKIN DISEASE, being more heterogeneous with respect to malignant cell lineage, clinical course, prognosis, and therapy. The only common feature among these tumors is the absence of giant REED-STERNBERG CELLS, a characteristic of Hodgkin's disease. (Experimental Factor Ontology, EFO_0000574)
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Genes

94 proteins co-occuring with the biological term lymphoma in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.

Symbol Name
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase
AICDA activation-induced cytidine deaminase
AKT1 v-akt murine thymoma viral oncogene homolog 1
AKT1S1 AKT1 substrate 1 (proline-rich)
ALK anaplastic lymphoma receptor tyrosine kinase
ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
ATM ATM serine/threonine kinase
BAD BCL2-associated agonist of cell death
BCL10 B-cell CLL/lymphoma 10
BCL2 B-cell CLL/lymphoma 2
BCL2L11 BCL2-like 11 (apoptosis facilitator)
BCL6 B-cell CLL/lymphoma 6
BCR breakpoint cluster region
BMF Bcl2 modifying factor
BRCA1 breast cancer 1, early onset
CARD11 caspase recruitment domain family, member 11
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase
CBLB Cbl proto-oncogene B, E3 ubiquitin protein ligase
CCND1 cyclin D1
CCND3 cyclin D3
CCR7 chemokine (C-C motif) receptor 7
CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CHEK2 checkpoint kinase 2
CREB1 cAMP responsive element binding protein 1
CSNK2B casein kinase 2, beta polypeptide
DOK2 docking protein 2, 56kDa
EGFR epidermal growth factor receptor
EIF4E eukaryotic translation initiation factor 4E
EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1
EIF6 eukaryotic translation initiation factor 6
ESR1 estrogen receptor 1
FOXO1 forkhead box O1
FOXO3 forkhead box O3
GCSAM germinal center-associated, signaling and motility
GRB2 growth factor receptor-bound protein 2
GSK3B glycogen synthase kinase 3 beta
H2AFX H2A histone family, member X
HABP4 hyaluronan binding protein 4
HIST1H3A histone cluster 1, H3a
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)
IKZF1 IKAROS family zinc finger 1 (Ikaros)
IL7R interleukin 7 receptor
IL9R interleukin 9 receptor
INPPL1 inositol polyphosphate phosphatase-like 1
IRF4 interferon regulatory factor 4
JAK2 Janus kinase 2
JUN jun proto-oncogene
JUNB jun B proto-oncogene
KDR kinase insert domain receptor
LCK LCK proto-oncogene, Src family tyrosine kinase
LPXN leupaxin
LRRK2 leucine-rich repeat kinase 2
LYN LYN proto-oncogene, Src family tyrosine kinase
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2
MCTS1 malignant T cell amplified sequence 1
MKNK1 MAP kinase interacting serine/threonine kinase 1
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MYC v-myc avian myelocytomatosis viral oncogene homolog
NBN nibrin
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1
PAK1 p21 protein (Cdc42/Rac)-activated kinase 1
PAK2 p21 protein (Cdc42/Rac)-activated kinase 2
PDPK1 3-phosphoinositide dependent protein kinase 1
PKM pyruvate kinase, muscle
PLCG1 phospholipase C, gamma 1
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
PRKACA protein kinase, cAMP-dependent, catalytic, alpha
PTEN phosphatase and tensin homolog
PTPN11 protein tyrosine phosphatase, non-receptor type 11
PTPN6 protein tyrosine phosphatase, non-receptor type 6
RB1 retinoblastoma 1
REL v-rel avian reticuloendotheliosis viral oncogene homolog
RPS6 ribosomal protein S6
RUNX3 runt-related transcription factor 3
SFPQ splicing factor proline/glutamine-rich
SRC SRC proto-oncogene, non-receptor tyrosine kinase
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STAT5A signal transducer and activator of transcription 5A
STAT5B signal transducer and activator of transcription 5B
STAT6 signal transducer and activator of transcription 6, interleukin-4 induced
STK4 serine/threonine kinase 4
TIAM1 T-cell lymphoma invasion and metastasis 1
TP53 tumor protein p53
TRAF2 TNF receptor-associated factor 2
TRIM28 tripartite motif containing 28
VASP vasodilator-stimulated phosphoprotein
VAV3 vav 3 guanine nucleotide exchange factor
WDR77 WD repeat domain 77
ZC3HC1 zinc finger, C3HC-type containing 1