liver cancer Gene Set

Dataset GWASdb SNP-Disease Associations
Category disease or phenotype associations
Type disease
Description A gastrointestinal system cancer that is located_in the liver. (Human Disease Ontology, DOID_3571)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/DOID:3571
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Genes

47 genes associated with the disease liver cancer in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.

Symbol Name Standardized Value
FUT6 fucosyltransferase 6 (alpha (1,3) fucosyltransferase) 3.27078
FUT2 fucosyltransferase 2 (secretor status included) 3.07853
ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) 2.58818
HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 2.28652
HLA-DPB1 major histocompatibility complex, class II, DP beta 1 2.20893
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 1.99267
HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 1.77016
FAM3B family with sequence similarity 3, member B 1.62448
RASIP1 Ras interacting protein 1 1.5475
KIF1B kinesin family member 1B 1.50076
AFP alpha-fetoprotein 1.49201
C2 complement component 2 1.46727
PPIP5K1 diphosphoinositol pentakisphosphate kinase 1 1.31635
DBP D site of albumin promoter (albumin D-box) binding protein 1.2969
SEC1P secretory blood group 1, pseudogene 1.28962
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 1.28482
DEPDC5 DEP domain containing 5 1.26085
MICA MHC class I polypeptide-related sequence A 1.22685
FUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) 1.20093
RPL18 ribosomal protein L18 1.12626
SULT2B1 sulfotransferase family, cytosolic, 2B, member 1 1.11474
B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 0.979975
STAT4 signal transducer and activator of transcription 4 0.968197
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.966942
GRIK1 glutamate receptor, ionotropic, kainate 1 0.867193
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 0.646167
MAP1A microtubule-associated protein 1A 0.615527
CA11 carbonic anhydrase XI 0.610135
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 0.606692
TP53BP1 tumor protein p53 binding protein 1 0.60058
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 0.585123
MTMR6 myotubularin related protein 6 0.555938
LRP1B low density lipoprotein receptor-related protein 1B 0.494569
EFCAB11 EF-hand calcium binding domain 11 0.478563
CHD6 chromodomain helicase DNA binding protein 6 0.477734
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 0.469897
CD163L1 CD163 molecule-like 1 0.467768
SYNJ2BP synaptojanin 2 binding protein 0.459539
PC pyruvate carboxylase 0.457189
THSD7A thrombospondin, type I, domain containing 7A 0.452902
PODXL podocalyxin-like 0.448209
ADCY10 adenylate cyclase 10 (soluble) 0.446933
CASC15 cancer susceptibility candidate 15 (non-protein coding) 0.446629
C6ORF7 chromosome 6 open reading frame 7 0.444425
AJAP1 adherens junctions associated protein 1 0.444211
ZHX2 zinc fingers and homeoboxes 2 0.438895
TMTC1 transmembrane and tetratricopeptide repeat containing 1 0.424719