lateral loop Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description Non-compact myelin located adjacent to the nodes of Ranvier in a myelin segment. These non-compact regions include cytoplasm from the cell responsible for synthesizing the myelin. Lateral loops are found in the paranodal region adjacent to the nodes of Ranvier, while Schmidt-Lantermann clefts are analogous structures found within the compact myelin internode. (Gene Ontology, GO_0043219)
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Genes

72 proteins co-occuring with the lateral loop cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
CNTNAP1 contactin associated protein 1 1.57703
OPALIN oligodendrocytic myelin paranodal and inner loop protein 1.47514
MAG myelin associated glycoprotein 1.32492
UGT8 UDP glycosyltransferase 8 1.15467
GAL3ST1 galactose-3-O-sulfotransferase 1 1.15006
SBF2 SET binding factor 2 1.14955
NFASC neurofascin 1.14136
PRX periaxin 1.09594
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 1.05993
ARHGEF10 Rho guanine nucleotide exchange factor (GEF) 10 0.949236
TDP1 tyrosyl-DNA phosphodiesterase 1 0.918579
MTMR2 myotubularin related protein 2 0.875028
GDAP1 ganglioside induced differentiation associated protein 1 0.868126
DACT2 dishevelled-binding antagonist of beta-catenin 2 0.836433
MBP myelin basic protein 0.829548
CNP 2',3'-cyclic nucleotide 3' phosphodiesterase 0.798353
RAI1 retinoic acid induced 1 0.772732
GJC2 gap junction protein, gamma 2, 47kDa 0.745929
CLDN19 claudin 19 0.738713
GALC galactosylceramidase 0.702626
AKAP13 A kinase (PRKA) anchor protein 13 0.695148
SETX senataxin 0.656033
DHH desert hedgehog 0.631598
SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6 0.615013
APTX aprataxin 0.593492
SYCP3 synaptonemal complex protein 3 0.579669
CNTN6 contactin 6 0.579251
KCNA2 potassium channel, voltage gated shaker related subfamily A, member 2 0.573411
NTN1 netrin 1 0.562187
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.542352
LITAF lipopolysaccharide-induced TNF factor 0.537005
SMC1B structural maintenance of chromosomes 1B 0.530438
MAL mal, T-cell differentiation protein 0.525522
JAM3 junctional adhesion molecule 3 0.521432
SCN8A sodium channel, voltage gated, type VIII alpha subunit 0.512862
PTPRB protein tyrosine phosphatase, receptor type, B 0.512455
STAG2 stromal antigen 2 0.51164
MPDZ multiple PDZ domain protein 0.50635
SPTBN4 spectrin, beta, non-erythrocytic 4 0.504724
GJB1 gap junction protein, beta 1, 32kDa 0.503912
SMC1A structural maintenance of chromosomes 1A 0.501476
SEPT11 septin 11 0.500258
CAMP cathelicidin antimicrobial peptide 0.493775
CELF1 CUGBP, Elav-like family member 1 0.484483
INADL InaD-like (Drosophila) 0.48005
MARVELD2 MARVEL domain containing 2 0.468001
KIF1B kinesin family member 1B 0.463997
EPB41L2 erythrocyte membrane protein band 4.1-like 2 0.455613
CD200 CD200 molecule 0.453223
SEPT6 septin 6 0.427891
SDC3 syndecan 3 0.426318
B3GAT1 beta-1,3-glucuronyltransferase 1 0.408309
EGR2 early growth response 2 0.404804
NDRG1 N-myc downstream regulated 1 0.36204
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 0.343421
HSPB8 heat shock 22kDa protein 8 0.328332
SOX10 SRY (sex determining region Y)-box 10 0.315586
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.304771
HSPB1 heat shock 27kDa protein 1 0.294378
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.286245
UGCG UDP-glucose ceramide glucosyltransferase 0.270434
MPZ myelin protein zero 0.262025
HMGB2 high mobility group box 2 0.240996
HLA-DMA major histocompatibility complex, class II, DM alpha 0.228464
BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 0.22279
TOP1 topoisomerase (DNA) I 0.207108
SMC3 structural maintenance of chromosomes 3 0.206766
RAD21 RAD21 homolog (S. pombe) 0.206423
TJP2 tight junction protein 2 0.181524
NRG1 neuregulin 1 0.179167
KRT1 keratin 1, type II 0.178299
NEFL neurofilament, light polypeptide 0.165231