lateral geniculate nucleus Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The lateral geniculate nucleus is the primary processing center for visual information received from the retina of the eye. The LGN is found inside the thalamus of the brain, and is thus part of the central nervous system. (BRENDA Tissue and Enzyme Source Ontology, BTO_0004366)
Similar Terms
Downloads & Tools

Genes

181 proteins co-occuring with the tissue lateral geniculate nucleus in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 2.13577
PVALB parvalbumin 1.84555
CALB1 calbindin 1, 28kDa 1.68204
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 1.45564
DTNA dystrobrevin, alpha 1.4034
PCP4 Purkinje cell protein 4 1.39697
OPN4 opsin 4 1.37271
FOS FBJ murine osteosarcoma viral oncogene homolog 1.33953
ABHD17A abhydrolase domain containing 17A 1.30658
ABHD17AP1 abhydrolase domain containing 17A pseudogene 1 1.30658
NPY neuropeptide Y 1.2913
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 1.24744
ACHE acetylcholinesterase (Yt blood group) 1.23093
CHAT choline O-acetyltransferase 1.22024
EFNA2 ephrin-A2 1.19045
LYPD2 LY6/PLAUR domain containing 2 1.1829
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 1.14742
GRIA4 glutamate receptor, ionotropic, AMPA 4 1.10181
CTBP2 C-terminal binding protein 2 1.09253
NTF4 neurotrophin 4 1.0484
PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 1.04752
BDNF brain-derived neurotrophic factor 1.0282
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.983254
CALB2 calbindin 2 0.975015
TAC1 tachykinin, precursor 1 0.971984
A1CF APOBEC1 complementation factor 0.966793
GRM1 glutamate receptor, metabotropic 1 0.963767
ZIC2 Zic family member 2 0.908814
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.89902
BCS1L BC1 (ubiquinol-cytochrome c reductase) synthesis-like 0.890101
EPHB1 EPH receptor B1 0.879512
CDH8 cadherin 8, type 2 0.877397
NGF nerve growth factor (beta polypeptide) 0.865577
MARCH7 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 0.844545
MAP2 microtubule-associated protein 2 0.83951
PPP2R2C protein phosphatase 2, regulatory subunit B, gamma 0.829453
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 0.827778
SDF4 stromal cell derived factor 4 0.808134
CCK cholecystokinin 0.800626
ADCY1 adenylate cyclase 1 (brain) 0.793959
SLITRK6 SLIT and NTRK-like family, member 6 0.786052
VGF VGF nerve growth factor inducible 0.776494
SPOCK3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 0.77027
CHRNA4 cholinergic receptor, nicotinic, alpha 4 (neuronal) 0.729385
VCX variable charge, X-linked 0.727741
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.724453
VCX2 variable charge, X-linked 2 0.722398
SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 0.720345
VCX3B variable charge, X-linked 3B 0.712549
GABPA GA binding protein transcription factor, alpha subunit 60kDa 0.70886
VCX3A variable charge, X-linked 3A 0.699853
RELN reelin 0.698625
TYR tyrosinase 0.688
HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 0.676987
EPHA5 EPH receptor A5 0.676172
RAB8B RAB8B, member RAS oncogene family 0.672913
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 0.672913
GNAT1 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 0.671285
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 0.668029
HCN2 hyperpolarization activated cyclic nucleotide gated potassium channel 2 0.663555
CHRNB2 cholinergic receptor, nicotinic, beta 2 (neuronal) 0.661929
FGF22 fibroblast growth factor 22 0.653807
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 0.649749
ZIC4 Zic family member 4 0.634358
ISL2 ISL LIM homeobox 2 0.62991
GPHN gephyrin 0.622639
GNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 0.617393
FOXP2 forkhead box P2 0.605306
RICTOR RPTOR independent companion of MTOR, complex 2 0.599675
HTR1A 5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled 0.598067
OLIG3 oligodendrocyte transcription factor 3 0.596862
HCRT hypocretin (orexin) neuropeptide precursor 0.59646
GBX2 gastrulation brain homeobox 2 0.596058
RGS7BP regulator of G-protein signaling 7 binding protein 0.586026
STMN2 stathmin 2 0.578016
MAOA monoamine oxidase A 0.574816
PTCH1 patched 1 0.567227
KCNK9 potassium channel, two pore domain subfamily K, member 9 0.560449
GAP43 growth associated protein 43 0.554876
EPHA8 EPH receptor A8 0.537812
CHST2 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 0.516104
GRM7 glutamate receptor, metabotropic 7 0.514924
GRM5 glutamate receptor, metabotropic 5 0.501182
CNTF ciliary neurotrophic factor 0.500398
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 0.499223
ADCY8 adenylate cyclase 8 (brain) 0.49844
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) 0.494528
HNRNPM heterogeneous nuclear ribonucleoprotein M 0.482428
GABPB1 GA binding protein transcription factor, beta subunit 1 0.474258
GRM2 glutamate receptor, metabotropic 2 0.47348
TH tyrosine hydroxylase 0.469599
GRM4 glutamate receptor, metabotropic 4 0.457987
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 0.457214
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.45567
SLC18A2 solute carrier family 18 (vesicular monoamine transporter), member 2 0.452584
HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 0.451813
UBR1 ubiquitin protein ligase E3 component n-recognin 1 0.441042
CCKAR cholecystokinin A receptor 0.437589
PRSS50 protease, serine, 50 0.43146
FOXD2 forkhead box D2 0.427636
FZD10 frizzled class receptor 10 0.422292
ATRN attractin 0.41848
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.409731
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 0.40328
AFM afamin 0.402901
ZMYND10 zinc finger, MYND-type containing 10 0.401386
PIR pirin (iron-binding nuclear protein) 0.401386
LILRA6 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 0.393819
BCAT1 branched chain amino-acid transaminase 1, cytosolic 0.387027
LHX9 LIM homeobox 9 0.377996
CNGA3 cyclic nucleotide gated channel alpha 3 0.372369
BMP8B bone morphogenetic protein 8b 0.369747
EFNA3 ephrin-A3 0.368998
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 0.360409
AVPR1A arginine vasopressin receptor 1A 0.357802
IRGM immunity-related GTPase family, M 0.357802
EEF1A2 eukaryotic translation elongation factor 1 alpha 2 0.35743
GFAP glial fibrillary acidic protein 0.355198
HTR1F 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled 0.350372
CRB1 crumbs family member 1, photoreceptor morphogenesis associated 0.348889
MAP4 microtubule-associated protein 4 0.347038
BCAT2 branched chain amino-acid transaminase 2, mitochondrial 0.345928
FMR1 fragile X mental retardation 1 0.341126
JUN jun proto-oncogene 0.334865
RNF34 ring finger protein 34, E3 ubiquitin protein ligase 0.33413
NR1D1 nuclear receptor subfamily 1, group D, member 1 0.330827
RFC1 replication factor C (activator 1) 1, 145kDa 0.32753
GRM8 glutamate receptor, metabotropic 8 0.325701
HTR1B 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled 0.322779
GRIN1 glutamate receptor, ionotropic, N-methyl D-aspartate 1 0.319498
DSCAM Down syndrome cell adhesion molecule 0.315498
ADRA1D adrenoceptor alpha 1D 0.314409
POU4F3 POU class 4 homeobox 3 0.314046
HDLBP high density lipoprotein binding protein 0.310421
ICT1 immature colon carcinoma transcript 1 0.309697
SIRT5 sirtuin 5 0.307167
CNR2 cannabinoid receptor 2 (macrophage) 0.303919
CA4 carbonic anhydrase IV 0.303198
SIRT7 sirtuin 7 0.29996
SST somatostatin 0.299242
MED12 mediator complex subunit 12 0.298524
DLX1 distal-less homeobox 1 0.295655
DYNLRB1 dynein, light chain, roadblock-type 1 0.294223
PTN pleiotrophin 0.292793
NGFR nerve growth factor receptor 0.290295
GRIA1 glutamate receptor, ionotropic, AMPA 1 0.289939
DNTT DNA nucleotidylexotransferase 0.28887
SIRT4 sirtuin 4 0.284962
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 0.278603
BRD4 bromodomain containing 4 0.269867
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.267446
NOS1 nitric oxide synthase 1 (neuronal) 0.267102
GDF5 growth differentiation factor 5 0.260606
TFCP2 transcription factor CP2 0.259929
APBB1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 0.257237
BOC BOC cell adhesion associated, oncogene regulated 0.25457
NTS neurotensin 0.254239
NTF3 neurotrophin 3 0.254239
HRH3 histamine receptor H3 0.253248
NTRK2 neurotrophic tyrosine kinase, receptor, type 2 0.24486
GADD45G growth arrest and DNA-damage-inducible, gamma 0.242983
ACAN aggrecan 0.241132
POU4F2 POU class 4 homeobox 2 0.232599
SIRT6 sirtuin 6 0.231482
PPY pancreatic polypeptide 0.231206
PCDH11Y protocadherin 11 Y-linked 0.231206
PLCB4 phospholipase C, beta 4 0.230931
ADCY9 adenylate cyclase 9 0.230382
LXN latexin 0.229032
TRHR thyrotropin-releasing hormone receptor 0.226667
SYP synaptophysin 0.225395
LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 0.224398
BCHE butyrylcholinesterase 0.223419
PCDH11X protocadherin 11 X-linked 0.222224
CCKBR cholecystokinin B receptor 0.221521
SRRM1 serine/arginine repetitive matrix 1 0.219485
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 0.219047
HCRTR1 hypocretin (orexin) receptor 1 0.218186
RORA RAR-related orphan receptor A 0.216126
SLK STE20-like kinase 0.214576
TBR1 T-box, brain, 1 0.21365