juvenile rheumatoid arthritis Gene Set

Dataset GWASdb SNP-Phenotype Associations
Category disease or phenotype associations
Type phenotype
Description A rheumatoid arthritis that involves an autoimmune disease onset in children under 16 which attacks the healthy cells and tissue of located_in joint. (Human Disease Ontology, DOID_676)
External Link http://jjwanglab.org/gwasdb/gwasdb2/gwasdb2/go_trait/HP:0005681
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Genes

64 genes associated with the juvenile rheumatoid arthritis phenotype in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.

Symbol Name Standardized Value
C6ORF10 chromosome 6 open reading frame 10 1.41863
PTPN2 protein tyrosine phosphatase, non-receptor type 2 1.22695
TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 1.15352
REEP3 receptor accessory protein 3 1.15315
JMJD1C jumonji domain containing 1C 1.13417
NRBF2 nuclear receptor binding factor 2 1.12147
VTCN1 V-set domain containing T cell activation inhibitor 1 1.04365
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 1.0022
LAMA1 laminin, alpha 1 0.931527
NGF nerve growth factor (beta polypeptide) 0.924776
EDAR ectodysplasin A receptor 0.8677
CHRND cholinergic receptor, nicotinic, delta (muscle) 0.841148
FRA10AC1 fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 0.836232
SCML4 sex comb on midleg-like 4 (Drosophila) 0.807106
PVT1 Pvt1 oncogene (non-protein coding) 0.792263
MYH13 myosin, heavy chain 13, skeletal muscle 0.766703
ANTXR2 anthrax toxin receptor 2 0.752335
LAMB4 laminin, beta 4 0.724077
HM13 histocompatibility (minor) 13 0.654787
DMRTB1 DMRT-like family B with proline-rich C-terminal, 1 0.644396
RNLS renalase, FAD-dependent amine oxidase 0.642701
THADA thyroid adenoma associated 0.639858
CLASP2 cytoplasmic linker associated protein 2 0.636635
MKRN2 makorin ring finger protein 2 0.632634
PEBP4 phosphatidylethanolamine-binding protein 4 0.630262
ADAD1 adenosine deaminase domain containing 1 (testis-specific) 0.621094
SLC9A9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 0.612523
TTC28 tetratricopeptide repeat domain 28 0.60851
DPP10 dipeptidyl-peptidase 10 (non-functional) 0.606913
MGLL monoglyceride lipase 0.599449
RAF1 Raf-1 proto-oncogene, serine/threonine kinase 0.590538
ATP6V1B1 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1 0.59024
LOC285423 uncharacterized LOC285423 0.579049
DPY19L1P1 DPY19L1 pseudogene 1 0.575991
RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 0.571756
BCAT1 branched chain amino-acid transaminase 1, cytosolic 0.566616
JDP2 Jun dimerization protein 2 0.566616
COL1A2 collagen, type I, alpha 2 0.566616
ZNF160 zinc finger protein 160 0.565624
SPRED2 sprouty-related, EVH1 domain containing 2 0.560832
TSPAN9 tetraspanin 9 0.559371
RAP1GAP2 RAP1 GTPase activating protein 2 0.557335
NCK2 NCK adaptor protein 2 0.557335
PMP22 peripheral myelin protein 22 0.556012
ATG5 autophagy related 5 0.556012
ADGRL4 adhesion G protein-coupled receptor L4 0.55536
ALDH1L1 aldehyde dehydrogenase 1 family, member L1 0.553442
PTPRS protein tyrosine phosphatase, receptor type, S 0.551579
ZNF365 zinc finger protein 365 0.546854
IGSF5 immunoglobulin superfamily, member 5 0.542984
ALDH18A1 aldehyde dehydrogenase 18 family, member A1 0.54245
AHI1 Abelson helper integration site 1 0.537489
EPHA5 EPH receptor A5 0.535185
SLX4IP SLX4 interacting protein 0.534439
TMEM178A transmembrane protein 178A 0.53407
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 0.532262
COG6 component of oligomeric golgi complex 6 0.531908
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 0.53086
LTF lactotransferrin 0.530515
AMBRA1 autophagy/beclin-1 regulator 1 0.529832
ADGRV1 adhesion G protein-coupled receptor V1 0.529494
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.526276
STAT4 signal transducer and activator of transcription 4 0.525663
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.525058