interstitial matrix Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A type of extracellular matrix found in interstitial connective tissue, characterized by the presence of fibronectins, proteoglycans, and types I, III, V, VI, VII and XII collagens. (Gene Ontology, GO_0005614)
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Genes

66 proteins co-occuring with the interstitial matrix cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
FN1 fibronectin 1 1.35978
COL6A6 collagen, type VI, alpha 6 1.12347
ALB albumin 0.94876
TGFB1 transforming growth factor, beta 1 0.865826
NID1 nidogen 1 0.841482
MMP2 matrix metallopeptidase 2 0.783241
TNC tenascin C 0.765893
MMP1 matrix metallopeptidase 1 0.724812
HAS2 hyaluronan synthase 2 0.665529
SOD3 superoxide dismutase 3, extracellular 0.647433
SEBOX SEBOX homeobox 0.633732
MMP9 matrix metallopeptidase 9 0.623079
LAMB2 laminin, beta 2 (laminin S) 0.550599
CD44 CD44 molecule (Indian blood group) 0.521432
MLEC malectin 0.497015
SDC1 syndecan 1 0.464798
MMP14 matrix metallopeptidase 14 (membrane-inserted) 0.454418
VCAN versican 0.450438
SH3PXD2B SH3 and PX domains 2B 0.440124
LTBP3 latent transforming growth factor beta binding protein 3 0.43696
TIMP2 TIMP metallopeptidase inhibitor 2 0.433012
SULF1 sulfatase 1 0.421604
LTBP2 latent transforming growth factor beta binding protein 2 0.421212
TIMP1 TIMP metallopeptidase inhibitor 1 0.416902
PLG plasminogen 0.395873
HYAL1 hyaluronoglucosaminidase 1 0.393162
PDGFD platelet derived growth factor D 0.380814
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.369301
COL14A1 collagen, type XIV, alpha 1 0.367771
ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 0.354042
APLNR apelin receptor 0.352901
UROD uroporphyrinogen decarboxylase 0.346829
KRTAP11-1 keratin associated protein 11-1 0.344556
COL6A2 collagen, type VI, alpha 2 0.343042
CDH1 cadherin 1, type 1, E-cadherin (epithelial) 0.326829
MMP13 matrix metallopeptidase 13 0.320451
LAMA5 laminin, alpha 5 0.320077
ACE angiotensin I converting enzyme 0.317456
HYAL2 hyaluronoglucosaminidase 2 0.308494
ELN elastin 0.303283
BDKRB1 bradykinin receptor B1 0.299569
COL6A3 collagen, type VI, alpha 3 0.291417
CTSL cathepsin L 0.286245
CTSS cathepsin S 0.285138
FBLN1 fibulin 1 0.269701
FBLN2 fibulin 2 0.265677
FBN1 fibrillin 1 0.26239
PLAU plasminogen activator, urokinase 0.238837
CTSG cathepsin G 0.23776
REN renin 0.21716
FLT1 fms-related tyrosine kinase 1 0.21681
FGF2 fibroblast growth factor 2 (basic) 0.209858
ANOS1 anosmin 1 0.209858
SERPINA2 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2 (gene/pseudogene) 0.209513
THY1 Thy-1 cell surface antigen 0.209513
AMBP alpha-1-microglobulin/bikunin precursor 0.204718
ILK integrin-linked kinase 0.204378
ANGPTL4 angiopoietin-like 4 0.197993
CALCOCO2 calcium binding and coiled-coil domain 2 0.195681
SLC3A2 solute carrier family 3 (amino acid transporter heavy chain), member 2 0.194371
VWF von Willebrand factor 0.188905
COL6A1 collagen, type VI, alpha 1 0.18702
ABCA3 ATP-binding cassette, sub-family A (ABC1), member 3 0.178877
HSPG2 heparan sulfate proteoglycan 2 0.170888
RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 0.159658
TWIST1 twist family bHLH transcription factor 1 0.156863