icosahedral viral capsid Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form an icosahedron, a solid with 20 faces and 12 vertices. Icosahedral capsids have 12 pentamers plus 10(T-1) hexamers, where T is the triangulation number. Tobacco satellite necrosis virus has such a capsid structure. (Gene Ontology, GO_0019030)
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Genes

75 proteins co-occuring with the icosahedral viral capsid cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
GSTM1 glutathione S-transferase mu 1 2.29631
ICT1 immature colon carcinoma transcript 1 2.13477
CD3D CD3d molecule, delta (CD3-TCR complex) 1.72557
ZMYND10 zinc finger, MYND-type containing 10 1.72432
SEMG1 semenogelin I 1.53896
OR1L1 olfactory receptor, family 1, subfamily L, member 1 1.48249
SH2D3A SH2 domain containing 3A 1.30497
ZNF185 zinc finger protein 185 (LIM domain) 1.1988
GLYATL1 glycine-N-acyltransferase-like 1 1.09645
F11R F11 receptor 1.07968
TXNL4B thioredoxin-like 4B 1.00843
AP1M2 adaptor-related protein complex 1, mu 2 subunit 1.00744
AP2M1 adaptor-related protein complex 2, mu 1 subunit 1.00399
CLPS colipase, pancreatic 0.989759
SH2D3C SH2 domain containing 3C 0.963588
PPT2 palmitoyl-protein thioesterase 2 0.94211
KRAS Kirsten rat sarcoma viral oncogene homolog 0.939269
TFF3 trefoil factor 3 (intestinal) 0.932187
NUPR1 nuclear protein, transcriptional regulator, 1 0.924197
CTSL cathepsin L 0.890245
GYPA glycophorin A (MNS blood group) 0.881477
TNFSF4 tumor necrosis factor (ligand) superfamily, member 4 0.796979
PRAMEF20 PRAME family member 20 0.796062
GP5 glycoprotein V (platelet) 0.787359
C1ORF174 chromosome 1 open reading frame 174 0.748189
CD79A CD79a molecule, immunoglobulin-associated alpha 0.71768
ARMC9 armadillo repeat containing 9 0.677673
SLC36A4 solute carrier family 36 (proton/amino acid symporter), member 4 0.599381
GPX2 glutathione peroxidase 2 0.598117
GPR176 G protein-coupled receptor 176 0.575495
SLC10A3 solute carrier family 10, member 3 0.569664
AK7 adenylate kinase 7 0.557214
SUGP1 SURP and G patch domain containing 1 0.53454
SETX senataxin 0.519389
SP6 Sp6 transcription factor 0.517756
CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2 0.515716
FRY furry homolog (Drosophila) 0.514085
AHSG alpha-2-HS-glycoprotein 0.512455
S100A10 S100 calcium binding protein A10 0.51164
PDCD1 programmed cell death 1 0.503506
PRRC2A proline-rich coiled-coil 2A 0.496205
ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain 0.493775
RERE arginine-glutamic acid dipeptide (RE) repeats 0.480453
PIP prolactin-induced protein 0.480453
SOS1 son of sevenless homolog 1 (Drosophila) 0.453223
MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 0.424353
AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase 0.401693
IFITM3 interferon induced transmembrane protein 3 0.345692
LYZ lysozyme 0.338884
HDAC11 histone deacetylase 11 0.328332
GTF3A general transcription factor IIIA 0.312224
GYPE glycophorin E (MNS blood group) 0.292157
FRS2 fibroblast growth factor receptor substrate 2 0.291047
SRPR signal recognition particle receptor (docking protein) 0.285138
CNTN1 contactin 1 0.282926
KLK11 kallikrein-related peptidase 11 0.278509
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.275202
SLC5A7 solute carrier family 5 (sodium/choline cotransporter), member 7 0.274468
GSTA3 glutathione S-transferase alpha 3 0.260931
GPANK1 G patch domain and ankyrin repeats 1 0.260566
GSTA2 glutathione S-transferase alpha 2 0.259473
GSTA4 glutathione S-transferase alpha 4 0.259109
GSTA1 glutathione S-transferase alpha 1 0.256925
BAIAP2 BAI1-associated protein 2 0.249664
ASPN asporin 0.247854
SERPINA2 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2 (gene/pseudogene) 0.241716
NBPF10 neuroblastoma breakpoint family, member 10 0.222083
MADCAM1 mucosal vascular addressin cell adhesion molecule 1 0.214714
NPTN neuroplastin 0.212974
IGHV3-30 immunoglobulin heavy variable 3-30 0.211933
CTSS cathepsin S 0.211587
CD2 CD2 molecule 0.198991
DYNLT1 dynein, light chain, Tctex-type 1 0.187333
CTSB cathepsin B 0.173273
CNOT2 CCR4-NOT transcription complex, subunit 2 0.165697