growth phase culture Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The characteristic periods in the growth of a bacterial culture, as indicated by the shape of a graph of viable cell number versus time. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001900)
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Genes

124 proteins co-occuring with the tissue growth phase culture in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
KIRREL3-AS3 KIRREL3 antisense RNA 3 1.96831
GFM2 G elongation factor, mitochondrial 2 1.31379
CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 1.21446
OXSM 3-oxoacyl-ACP synthase, mitochondrial 1.01025
RPL10 ribosomal protein L10 1.00065
LYZ lysozyme 0.988466
DCAF7 DDB1 and CUL4 associated factor 7 0.981084
POLA1 polymerase (DNA directed), alpha 1, catalytic subunit 0.91308
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.881627
PGLYRP2 peptidoglycan recognition protein 2 0.870217
EXOC3 exocyst complex component 3 0.868529
AJAP1 adherens junctions associated protein 1 0.868529
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.858416
KCP kielin/chordin-like protein 0.818994
TREH trehalase (brush-border membrane glycoprotein) 0.781894
KRT84 keratin 84, type II 0.771514
TGS1 trimethylguanosine synthase 1 0.770685
DDX19B DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B 0.768612
NNT nicotinamide nucleotide transhydrogenase 0.758673
APITD1 apoptosis-inducing, TAF9-like domain 1 0.75247
ZNF79 zinc finger protein 79 0.74834
HRC histidine rich calcium binding protein 0.740915
PPAT phosphoribosyl pyrophosphate amidotransferase 0.727741
EIF6 eukaryotic translation initiation factor 6 0.724453
RNASET2 ribonuclease T2 0.712549
PSD pleckstrin and Sec7 domain containing 0.707631
CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 0.703536
CYTIP cytohesin 1 interacting protein 0.700262
NDUFAB1 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa 0.686368
LRG1 leucine-rich alpha-2-glycoprotein 1 0.683511
CLEC3A C-type lectin domain family 3, member A 0.66071
NT5C1A 5'-nucleotidase, cytosolic IA 0.637999
CLEC2B C-type lectin domain family 2, member B 0.63274
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 0.62991
CLEC10A C-type lectin domain family 10, member A 0.629506
FRY furry homolog (Drosophila) 0.626677
CSN1S1 casein alpha s1 0.616586
ACO2 aconitase 2, mitochondrial 0.614974
CAT catalase 0.610138
PTPRB protein tyrosine phosphatase, receptor type, B 0.607722
LAMA3 laminin, alpha 3 0.586427
MSRA methionine sulfoxide reductase A 0.586026
G6PD glucose-6-phosphate dehydrogenase 0.570021
MLNR motilin receptor 0.567626
AP2S1 adaptor-related protein complex 2, sigma 1 subunit 0.564833
RAD52 RAD52 homolog (S. cerevisiae) 0.550901
LAP3 leucine aminopeptidase 3 0.545342
ERCC4 excision repair cross-complementation group 4 0.543756
IL31RA interleukin 31 receptor A 0.543359
MPG N-methylpurine-DNA glycosylase 0.531879
MCAT malonyl CoA:ACP acyltransferase (mitochondrial) 0.522011
RAD51 RAD51 recombinase 0.520829
CDC6 cell division cycle 6 0.520435
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.505495
MCM8 minichromosome maintenance complex component 8 0.503926
AK1 adenylate kinase 1 0.49844
MGAM maltase-glucoamylase 0.498048
ADD1 adducin 1 (alpha) 0.494528
CACNA1B calcium channel, voltage-dependent, N type, alpha 1B subunit 0.492572
CTSE cathepsin E 0.473869
GLI1 GLI family zinc finger 1 0.461852
HSPB1 heat shock 27kDa protein 1 0.459532
AKR1A1 aldo-keto reductase family 1, member A1 (aldehyde reductase) 0.454898
PGD phosphogluconate dehydrogenase 0.448731
ALPPL2 alkaline phosphatase, placental-like 2 0.446422
RAD50 RAD50 homolog (S. cerevisiae) 0.446038
ALPL alkaline phosphatase, liver/bone/kidney 0.445653
ALPP alkaline phosphatase, placental 0.444884
HGS hepatocyte growth factor-regulated tyrosine kinase substrate 0.423818
RBMS1 RNA binding motif, single stranded interacting protein 1 0.420004
NR5A2 nuclear receptor subfamily 5, group A, member 2 0.415814
XPC xeroderma pigmentosum, complementation group C 0.415814
MSH2 mutS homolog 2 0.412391
VCP valosin containing protein 0.393819
ALB albumin 0.387781
AHCY adenosylhomocysteinase 0.382131
BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 0.371994
MARS methionyl-tRNA synthetase 0.369747
SOD2 superoxide dismutase 2, mitochondrial 0.358174
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.354084
LIG3 ligase III, DNA, ATP-dependent 0.337072
CPB2 carboxypeptidase B2 (plasma) 0.332294
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.32497
APRT adenine phosphoribosyltransferase 0.316951
CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 0.316588
PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.306805
CD79B CD79b molecule, immunoglobulin-associated beta 0.304279
MUC5B mucin 5B, oligomeric mucus/gel-forming 0.303198
CPE carboxypeptidase E 0.299601
TYR tyrosinase 0.298165
SARS seryl-tRNA synthetase 0.297089
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.294939
PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 0.294581
GLUL glutamate-ammonia ligase 0.292793
ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1 0.291008
FBXO17 F-box protein 17 0.288514
NME1-NME2 NME1-NME2 readthrough 0.279307
GSTA3 glutathione S-transferase alpha 3 0.278603
GSTA4 glutathione S-transferase alpha 4 0.276495
GSTA2 glutathione S-transferase alpha 2 0.276495
GSTA1 glutathione S-transferase alpha 1 0.272649
HAS1 hyaluronan synthase 1 0.271604
EEF2 eukaryotic translation elongation factor 2 0.262986
CPB1 carboxypeptidase B1 (tissue) 0.259929
BMP6 bone morphogenetic protein 6 0.256568
RNASEH2A ribonuclease H2, subunit A 0.242672
LARS leucyl-tRNA synthetase 0.235167
ENO1 enolase 1, (alpha) 0.234016
FLNA filamin A, alpha 0.225647
HSF1 heat shock transcription factor 1 0.218398
NME2 NME/NM23 nucleoside diphosphate kinase 2 0.217762
CDK6 cyclin-dependent kinase 6 0.179368
SRF serum response factor (c-fos serum response element-binding transcription factor) 0.178921
ASRGL1 asparaginase like 1 0.178796
DHFR dihydrofolate reductase 0.178171
PNP purine nucleoside phosphorylase 0.177713
HDC histidine decarboxylase 0.177352
PRSS50 protease, serine, 50 0.176779
CSN2 casein beta 0.176031
GSTM2 glutathione S-transferase mu 2 (muscle) 0.175626
CTRL chymotrypsin-like 0.175146
CDK5 cyclin-dependent kinase 5 0.174139
MSH6 mutS homolog 6 0.17379
MMP7 matrix metallopeptidase 7 0.169031