granule cell layer Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description The granule cell layer contains multiple small round neurons that lack axons. Long dendritic processes of the neurons reach the more superficial layers and inhibit mitral cells and tufted cells. Small distal processes make contacts with the exiting mitral cell axons. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001327)
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Genes

260 proteins co-occuring with the tissue granule cell layer in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
DCX doublecortin 1.96251
CALB1 calbindin 1, 28kDa 1.8507
RBFOX3 RNA binding protein, fox-1 homolog (C. elegans) 3 1.81328
PVALB parvalbumin 1.76425
CA4 carbonic anhydrase IV 1.66957
CALB2 calbindin 2 1.65007
CA13 carbonic anhydrase XIII 1.48598
BDNF brain-derived neurotrophic factor 1.40386
RELN reelin 1.40248
FOS FBJ murine osteosarcoma viral oncogene homolog 1.27471
GAD2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 1.22648
SST somatostatin 1.20156
NPY neuropeptide Y 1.1452
TH tyrosine hydroxylase 1.11597
ADCYAP1 adenylate cyclase activating polypeptide 1 (pituitary) 1.06691
GFAP glial fibrillary acidic protein 1.04577
RGS8 regulator of G-protein signaling 8 1.02995
NEUROD2 neuronal differentiation 2 1.01375
NTF3 neurotrophin 3 0.955134
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1 0.937059
NGF nerve growth factor (beta polypeptide) 0.931051
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 0.928478
NCAM1 neural cell adhesion molecule 1 0.91052
GPRC5D G protein-coupled receptor, class C, group 5, member D 0.91052
NES nestin 0.908387
ACHE acetylcholinesterase (Yt blood group) 0.900296
TSPAN5 tetraspanin 5 0.897745
PDYN prodynorphin 0.894346
SYN1 synapsin I 0.880358
GFRAL GDNF family receptor alpha like 0.880358
KCNV1 potassium channel, voltage gated modifier subfamily V, member 1 0.876552
PROX1 prospero homeobox 1 0.870639
RGS7 regulator of G-protein signaling 7 0.866842
CHAT choline O-acetyltransferase 0.865155
ASTN1 astrotactin 1 0.835318
NRGN neurogranin (protein kinase C substrate, RC3) 0.821921
GABBR1 gamma-aminobutyric acid (GABA) B receptor, 1 0.812309
CCK cholecystokinin 0.802293
ARC activity-regulated cytoskeleton-associated protein 0.788547
SYP synaptophysin 0.78522
GAP43 growth associated protein 43 0.768197
GPHN gephyrin 0.763226
SHH sonic hedgehog 0.760328
NR2C2 nuclear receptor subfamily 2, group C, member 2 0.757845
CYTH4 cytohesin 4 0.757018
IQSEC1 IQ motif and Sec7 domain 1 0.749166
GPRC5C G protein-coupled receptor, class C, group 5, member C 0.742564
CNTFR ciliary neurotrophic factor receptor 0.741327
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.731442
CNTN2 contactin 2 (axonal) 0.729797
SDF4 stromal cell derived factor 4 0.726918
SLC17A7 solute carrier family 17 (vesicular glutamate transporter), member 7 0.717882
ZIC1 Zic family member 1 0.712139
ASCL1 achaete-scute family bHLH transcription factor 1 0.70886
KCNJ4 potassium channel, inwardly rectifying subfamily J, member 4 0.706812
MARCKS myristoylated alanine-rich protein kinase C substrate 0.702308
CAMK4 calcium/calmodulin-dependent protein kinase IV 0.690042
WIZ widely interspaced zinc finger motifs 0.687592
MAP2 microtubule-associated protein 2 0.685959
KCNH4 potassium channel, voltage gated eag related subfamily H, member 4 0.680656
MARCKSL1 MARCKS-like 1 0.652589
GALR1 galanin receptor 1 0.649344
NPS neuropeptide S 0.648938
RAB15 RAB15, member RAS oncogene family 0.648532
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.643669
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 0.641238
SEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 0.640833
SLC30A3 solute carrier family 30 (zinc transporter), member 3 0.640428
DNTT DNA nucleotidylexotransferase 0.631931
PAX2 paired box 2 0.622235
NGFR nerve growth factor receptor 0.61941
SCN1B sodium channel, voltage gated, type I beta subunit 0.603295
PRNP prion protein 0.601686
CRH corticotropin releasing hormone 0.599273
POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 0.581618
SCG2 secretogranin II 0.581618
CA1 carbonic anhydrase I 0.580017
TAC1 tachykinin, precursor 1 0.578016
SYN2 synapsin II 0.578016
RBM10 RNA binding motif protein 10 0.574816
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 0.565631
HGFAC HGF activator 0.563238
JUN jun proto-oncogene 0.561245
CNTF ciliary neurotrophic factor 0.561245
GRIN2C glutamate receptor, ionotropic, N-methyl D-aspartate 2C 0.560847
CHST15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 0.56005
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.557661
FRMD3 FERM domain containing 3 0.554478
GPRC5B G protein-coupled receptor, class C, group 5, member B 0.547724
CNTN6 contactin 6 0.546929
ENO2 enolase 2 (gamma, neuronal) 0.546929
SCGN secretagogin, EF-hand calcium binding protein 0.545739
NRCAM neuronal cell adhesion molecule 0.544152
NEUROD1 neuronal differentiation 1 0.543359
NTF4 neurotrophin 4 0.535833
NCS1 neuronal calcium sensor 1 0.527928
SYN3 synapsin III 0.518072
TECTA tectorin alpha 0.515317
SALL3 spalt-like transcription factor 3 0.512957
LIN7C lin-7 homolog C (C. elegans) 0.511778
TNC tenascin C 0.508635
PCNA proliferating cell nuclear antigen 0.507064
CHGB chromogranin B 0.50079
ADCY2 adenylate cyclase 2 (brain) 0.492572
ARFRP1 ADP-ribosylation factor related protein 1 0.490619
SLC17A6 solute carrier family 17 (vesicular glutamate transporter), member 6 0.483206
STX1A syntaxin 1A (brain) 0.478534
RPS9 ribosomal protein S9 0.476201
GRM1 glutamate receptor, metabotropic 1 0.473869
AIF1 allograft inflammatory factor 1 0.473092
PAX6 paired box 6 0.469987
RGS7BP regulator of G-protein signaling 7 binding protein 0.464174
SNED1 sushi, nidogen and EGF-like domains 1 0.462626
VLDLR very low density lipoprotein receptor 0.462626
NRTN neurturin 0.461078
ARF4 ADP-ribosylation factor 4 0.456442
CREB1 cAMP responsive element binding protein 1 0.455284
KCNJ2 potassium channel, inwardly rectifying subfamily J, member 2 0.454512
DISC1 disrupted in schizophrenia 1 0.452969
RPL4 ribosomal protein L4 0.446422
GDF1 growth differentiation factor 1 0.445268
RICTOR RPTOR independent companion of MTOR, complex 2 0.442578
MEA1 male-enhanced antigen 1 0.440658
SPTBN4 spectrin, beta, non-erythrocytic 4 0.438356
STMN2 stathmin 2 0.422292
LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 0.421529
CDH2 cadherin 2, type 1, N-cadherin (neuronal) 0.421529
RBPJL recombination signal binding protein for immunoglobulin kappa J region-like 0.420004
CORT cortistatin 0.41848
PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 0.416957
CA14 carbonic anhydrase XIV 0.415434
GALR2 galanin receptor 2 0.415053
FAT2 FAT atypical cadherin 2 0.413532
MAP1B microtubule-associated protein 1B 0.411631
TNR tenascin R 0.407073
CACNA1G calcium channel, voltage-dependent, T type, alpha 1G subunit 0.402144
GRIA1 glutamate receptor, ionotropic, AMPA 1 0.401007
PENK proenkephalin 0.400628
IGF1 insulin-like growth factor 1 (somatomedin C) 0.399492
ERBB4 erb-b2 receptor tyrosine kinase 4 0.399114
DLG1 discs, large homolog 1 (Drosophila) 0.395331
SLC17A8 solute carrier family 17 (vesicular glutamate transporter), member 8 0.391553
FXYD2 FXYD domain containing ion transport regulator 2 0.391176
SYT3 synaptotagmin III 0.389666
RGS6 regulator of G-protein signaling 6 0.389289
RBM4 RNA binding motif protein 4 0.388535
CDNF cerebral dopamine neurotrophic factor 0.387404
LHX5 LIM homeobox 5 0.38665
OTX2 orthodenticle homeobox 2 0.38552
SSTR3 somatostatin receptor 3 0.384766
FABP7 fatty acid binding protein 7, brain 0.38439
MDK midkine (neurite growth-promoting factor 2) 0.381755
GAL galanin/GMAP prepropeptide 0.381379
AMPH amphiphysin 0.381379
CXCL12 chemokine (C-X-C motif) ligand 12 0.380251
KLF7 Kruppel-like factor 7 (ubiquitous) 0.378372
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.375743
NEU1 sialidase 1 (lysosomal sialidase) 0.375743
SELM selenoprotein M 0.374993
CNR1 cannabinoid receptor 1 (brain) 0.374243
PLXNB2 plexin B2 0.373493
GDF10 growth differentiation factor 10 0.373118
ATP1A3 ATPase, Na+/K+ transporting, alpha 3 polypeptide 0.370121
PSEN1 presenilin 1 0.367129
PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 0.363393
KIRREL3 kin of IRRE like 3 (Drosophila) 0.361901
ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A 0.359664
CA3 carbonic anhydrase III 0.359292
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 0.358546
ATOH1 atonal homolog 1 (Drosophila) 0.354455
RANBP3 RAN binding protein 3 0.351856
PDCD10 programmed cell death 10 0.34926
AHSG alpha-2-HS-glycoprotein 0.347038
GRIN2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D 0.346298
NEUROD4 neuronal differentiation 4 0.346298
GABRD gamma-aminobutyric acid (GABA) A receptor, delta 0.345928
GADD45B growth arrest and DNA-damage-inducible, beta 0.341495
CSTB cystatin B (stefin B) 0.341495
QPRT quinolinate phosphoribosyltransferase 0.338914
NCAN neurocan 0.338914
RGS10 regulator of G-protein signaling 10 0.33744
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 0.332661
CA12 carbonic anhydrase XII 0.33046
KCNK18 potassium channel, two pore domain subfamily K, member 18 0.329361
HOMER1 homer scaffolding protein 1 0.323874
GRM2 glutamate receptor, metabotropic 2 0.323144
PNOC prepronociceptin 0.319134
FUT9 fucosyltransferase 9 (alpha (1,3) fucosyltransferase) 0.316224
RERE arginine-glutamic acid dipeptide (RE) repeats 0.315498
GNB5 guanine nucleotide binding protein (G protein), beta 5 0.315498
FGF2 fibroblast growth factor 2 (basic) 0.314409
MAP1A microtubule-associated protein 1A 0.311507
CALM3 calmodulin 3 (phosphorylase kinase, delta) 0.309697
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.309335
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 0.308612
CALM1 calmodulin 1 (phosphorylase kinase, delta) 0.308251
LIN7A lin-7 homolog A (C. elegans) 0.307889
H3F3B H3 histone, family 3B (H3.3B) 0.30464
H3F3A H3 histone, family 3A 0.30464
EFNB1 ephrin-B1 0.303559
CRMP1 collapsin response mediator protein 1 0.303559
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 0.301398
UTRN utrophin 0.299601
PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa 0.297447
NPAS4 neuronal PAS domain protein 4 0.297089
VCAN versican 0.294581
PTPRD protein tyrosine phosphatase, receptor type, D 0.293866
DLL3 delta-like 3 (Drosophila) 0.293508
TMEM11 transmembrane protein 11 0.292793
NRG1 neuregulin 1 0.292436
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.291722
ADRA2A adrenoceptor alpha 2A 0.290652
NLGN2 neuroligin 2 0.289582
ATP2B3 ATPase, Ca++ transporting, plasma membrane 3 0.289226
PSEN2 presenilin 2 0.282483
PANX2 pannexin 2 0.28107
ECE2 endothelin converting enzyme 2 0.274045
ANTXR2 anthrax toxin receptor 2 0.2723
EPB41L1 erythrocyte membrane protein band 4.1-like 1 0.271952
SPRY4 sprouty homolog 4 (Drosophila) 0.270214
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.267102
TACR1 tachykinin receptor 1 0.264696
SYT1 synaptotagmin I 0.264353
ESR2 estrogen receptor 2 (ER beta) 0.262645
GDF7 growth differentiation factor 7 0.260945
CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 0.260606
CTNNA2 catenin (cadherin-associated protein), alpha 2 0.260606
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 0.259591
ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 0.258243
OPRL1 opiate receptor-like 1 0.257572
SCRT1 scratch family zinc finger 1 0.247719
SSTR2 somatostatin receptor 2 0.24676
ITPR3 inositol 1,4,5-trisphosphate receptor, type 3 0.246442
PTPRO protein tyrosine phosphatase, receptor type, O 0.246442
INA internexin neuronal intermediate filament protein, alpha 0.244232
CDK5 cyclin-dependent kinase 5 0.243605
CNGA2 cyclic nucleotide gated channel alpha 2 0.242363
PLXND1 plexin D1 0.241132
PLCD1 phospholipase C, delta 1 0.238706
LSAMP limbic system-associated membrane protein 0.237513
GRIA2 glutamate receptor, ionotropic, AMPA 2 0.234016
HPCA hippocalcin 0.233162
FZD9 frizzled class receptor 9 0.227707
NPY2R neuropeptide Y receptor Y2 0.227445
CAPN1 calpain 1, (mu/I) large subunit 0.226667
GLUL glutamate-ammonia ligase 0.2259
NFIA nuclear factor I/A 0.225144
CREM cAMP responsive element modulator 0.225144
EEF2K eukaryotic elongation factor 2 kinase 0.222224
CRHR1 corticotropin releasing hormone receptor 1 0.221755
SYT2 synaptotagmin II 0.221061
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.219264
NTN1 netrin 1 0.216325
CYTH1 cytohesin 1 0.216325
PTPN11 protein tyrosine phosphatase, non-receptor type 11 0.216325
APLP1 amyloid beta (A4) precursor-like protein 1 0.215341
PSPN persephin 0.215341
SLC25A18 solute carrier family 25 (glutamate carrier), member 18 0.213112
CTSB cathepsin B 0.212936
MANF mesencephalic astrocyte-derived neurotrophic factor 0.212761