granular component Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A structure found in the nucleolus, which contains nearly completed preribosomal particles destined for the cytoplasm. (Gene Ontology, GO_0001652)
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Genes

78 proteins co-occuring with the granular component cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
FBLL1 fibrillarin-like 1 1.63479
NCL nucleolin 1.38294
WDR46 WD repeat domain 46 1.30551
DCAF13 DDB1 and CUL4 associated factor 13 1.13778
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1.11837
NOL10 nucleolar protein 10 1.11225
URB2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) 0.942584
WDR43 WD repeat domain 43 0.933129
PANK3 pantothenate kinase 3 0.919514
TBL3 transducin (beta)-like 3 0.914376
UTP15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) 0.90089
RRP1B ribosomal RNA processing 1B 0.899962
NOL7 nucleolar protein 7, 27kDa 0.892556
RABL6 RAB, member RAS oncogene family-like 6 0.867666
SENP5 SUMO1/sentrin specific peptidase 5 0.866287
NPB neuropeptide B 0.843318
UTP18 UTP18 small subunit (SSU) processome component homolog (yeast) 0.775014
COIL coilin 0.73287
SURF4 surfeit 4 0.732422
CIRH1A cirrhosis, autosomal recessive 1A (cirhin) 0.730628
MINA MYC induced nuclear antigen 0.729284
P3H4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 0.726152
SURF6 surfeit 6 0.725258
UBTF upstream binding transcription factor, RNA polymerase I 0.682463
RPL7P32 ribosomal protein L7 pseudogene 32 0.669425
DNTT DNA nucleotidylexotransferase 0.644429
DDX56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 0.630745
NOP2 NOP2 nucleolar protein 0.617557
PANK2 pantothenate kinase 2 0.611201
NAT10 N-acetyltransferase 10 (GCN5-related) 0.596014
TOP1 topoisomerase (DNA) I 0.583849
SCYL1 SCY1-like 1 (S. cerevisiae) 0.569664
SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 0.563432
POLI polymerase (DNA directed) iota 0.560528
EBNA1BP2 EBNA1 binding protein 2 0.535772
SRSF2 serine/arginine-rich splicing factor 2 0.535772
CA4 carbonic anhydrase IV 0.518165
NOP56 NOP56 ribonucleoprotein 0.476027
MAFG v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog G 0.463198
RPS10 ribosomal protein S10 0.462398
CA3 carbonic anhydrase III 0.457208
CA1 carbonic anhydrase I 0.443292
PGLYRP1 peptidoglycan recognition protein 1 0.413773
SP3 Sp3 transcription factor 0.37505
TNR tenascin R 0.371982
PNN pinin, desmosome associated protein 0.357847
RNASE2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) 0.352142
PRIMA1 proline rich membrane anchor 1 0.344178
PF4 platelet factor 4 0.338128
RPL7 ribosomal protein L7 0.334733
BCAN brevican 0.333979
NCAN neurocan 0.325327
ILF3 interleukin enhancer binding factor 3, 90kDa 0.324201
DDX21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 0.301054
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 0.294378
PRMT5 protein arginine methyltransferase 5 0.292157
WT1 Wilms tumor 1 0.291047
FUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) 0.290678
UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 0.265677
MDK midkine (neurite growth-promoting factor 2) 0.265311
SURF1 surfeit 1 0.253291
GAST gastrin 0.242797
EPX eosinophil peroxidase 0.242076
CDKN2A cyclin-dependent kinase inhibitor 2A 0.239197
CA2 carbonic anhydrase II 0.233459
GZMA granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) 0.233101
AIRE autoimmune regulator 0.231315
SUMO1 small ubiquitin-like modifier 1 0.227397
NFE2 nuclear factor, erythroid 2 0.200328
SUMO3 small ubiquitin-like modifier 3 0.193394
CFH complement factor H 0.185777
SUMO2 small ubiquitin-like modifier 2 0.180339
FMR1 fragile X mental retardation 1 0.175466
CSH1 chorionic somatomammotropin hormone 1 (placental lactogen) 0.164542
RNASE3 ribonuclease, RNase A family, 3 0.16342
HPSE heparanase 0.16342
TIA1 TIA1 cytotoxic granule-associated RNA binding protein 0.162763
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.158882