genome Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
Description A genome is the full genetic content of an organism, contained in either DNA or RNA (such as for viruses). (Experimental Factor Ontology, EFO_0004420)
Similar Terms
Downloads & Tools

Genes

413 genes co-occuring with the biological term genome in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
AATF apoptosis antagonizing transcription factor
ABCG8 ATP-binding cassette, sub-family G (WHITE), member 8
ADIPOQ adiponectin, C1Q and collagen domain containing
ADIPOR1 adiponectin receptor 1
AGO1 argonaute RISC catalytic component 1
AGO2 argonaute RISC catalytic component 2
AHR aryl hydrocarbon receptor
AICDA activation-induced cytidine deaminase
AIRE autoimmune regulator
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALDH1L2 aldehyde dehydrogenase 1 family, member L2
ALX3 ALX homeobox 3
ANO10 anoctamin 10
APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
APOBEC3A apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
APOBEC3H apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
ARHGAP18 Rho GTPase activating protein 18
ARNT aryl hydrocarbon receptor nuclear translocator
ASF1A anti-silencing function 1A histone chaperone
ATG4A autophagy related 4A, cysteine peptidase
ATM ATM serine/threonine kinase
ATR ATR serine/threonine kinase
ATRX alpha thalassemia/mental retardation syndrome X-linked
AURKC aurora kinase C
AZF1 azoospermia factor 1
BANF1 barrier to autointegration factor 1
BCL11A B-cell CLL/lymphoma 11A (zinc finger protein)
BCL2 B-cell CLL/lymphoma 2
BIRC3 baculoviral IAP repeat containing 3
BLM Bloom syndrome, RecQ helicase-like
BRCA1 breast cancer 1, early onset
BRCA2 breast cancer 2, early onset
BRD4 bromodomain containing 4
BST2 bone marrow stromal cell antigen 2
BTG3 BTG family, member 3
BTRC beta-transducin repeat containing E3 ubiquitin protein ligase
BUB1 BUB1 mitotic checkpoint serine/threonine kinase
C11ORF31 chromosome 11 open reading frame 31
CA2 carbonic anhydrase II
CABIN1 calcineurin binding protein 1
CBLL1 Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
CCDC8 coiled-coil domain containing 8
CCL3L1 chemokine (C-C motif) ligand 3-like 1
CCL4L1 chemokine (C-C motif) ligand 4-like 1
CCNA2 cyclin A2
CCNB1 cyclin B1
CCNF cyclin F
CCNK cyclin K
CCP110 centriolar coiled coil protein 110kDa
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CD1A CD1a molecule
CD24 CD24 molecule
CD3G CD3g molecule, gamma (CD3-TCR complex)
CD44 CD44 molecule (Indian blood group)
CDCP1 CUB domain containing protein 1
CDH4 cadherin 4, type 1, R-cadherin (retinal)
CDK2 cyclin-dependent kinase 2
CDK9 cyclin-dependent kinase 9
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN2A cyclin-dependent kinase inhibitor 2A
CDKN2B-AS1 CDKN2B antisense RNA 1
CENPF centromere protein F, 350/400kDa
CEP152 centrosomal protein 152kDa
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHAF1A chromatin assembly factor 1, subunit A (p150)
CHD3 chromodomain helicase DNA binding protein 3
CHEK1 checkpoint kinase 1
CHEK2 checkpoint kinase 2
CLU clusterin
CNTN4 contactin 4
COL6A4P2 collagen, type VI, alpha 4 pseudogene 2
CR1 complement component (3b/4b) receptor 1 (Knops blood group)
CSMD1 CUB and Sushi multiple domains 1
CTCF CCCTC-binding factor (zinc finger protein)
CUL7 cullin 7
CXCL8 chemokine (C-X-C motif) ligand 8
CYP2D6 cytochrome P450, family 2, subfamily D, polypeptide 6
DAXX death-domain associated protein
DCLRE1A DNA cross-link repair 1A
DCLRE1B DNA cross-link repair 1B
DDR2 discoidin domain receptor tyrosine kinase 2
DDX1 DEAD (Asp-Glu-Ala-Asp) box helicase 1
DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A
DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
DDX58 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6
DEFB103A defensin, beta 103A
DEFB104A defensin, beta 104A
DLX5 distal-less homeobox 5
DLX6 distal-less homeobox 6
DNAH5 dynein, axonemal, heavy chain 5
DNMT1 DNA (cytosine-5-)-methyltransferase 1
DRD1 dopamine receptor D1
DTL denticleless E3 ubiquitin protein ligase homolog (Drosophila)
DYNC1I1 dynein, cytoplasmic 1, intermediate chain 1
E2F1 E2F transcription factor 1
EEF1A1 eukaryotic translation elongation factor 1 alpha 1
EGFR epidermal growth factor receptor
EHMT2 euchromatic histone-lysine N-methyltransferase 2
EMD emerin
ERVW-1 endogenous retrovirus group W, member 1
ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2
ESR1 estrogen receptor 1
EXO1 exonuclease 1
EXOC1 exocyst complex component 1
EYS eyes shut homolog (Drosophila)
FADD Fas (TNFRSF6)-associated via death domain
FANCD2 Fanconi anemia, complementation group D2
FASN fatty acid synthase
FBXO5 F-box protein 5
FEN1 flap structure-specific endonuclease 1
FERMT2 fermitin family member 2
FHIT fragile histidine triad
FKBP6 FK506 binding protein 6, 36kDa
FLG filaggrin
FOXA2 forkhead box A2
FOXR2 forkhead box R2
FRA2H fragile site, aphidicolin type, common, fra(2)(q32.1)
FRAXE fragile site, folic acid type, rare, fra(X)(q28) E
GADD45A growth arrest and DNA-damage-inducible, alpha
GAPDH glyceraldehyde-3-phosphate dehydrogenase
GATA3 GATA binding protein 3
GATSL3 GATS protein-like 3
GBA glucosidase, beta, acid
GH2 growth hormone 2
GP2 glycoprotein 2 (zymogen granule membrane)
GSTT1 glutathione S-transferase theta 1
GTF2I general transcription factor IIi
H19 H19, imprinted maternally expressed transcript (non-protein coding)
H2AFX H2A histone family, member X
HBM hemoglobin, mu
HDAC1 histone deacetylase 1
HDGFL1 hepatoma derived growth factor-like 1
HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
HIRA histone cell cycle regulator
HIST2H2AC histone cluster 2, H2ac
HIST2H2BE histone cluster 2, H2be
HIST4H4 histone cluster 4, H4
HJURP Holliday junction recognition protein
HLA-B major histocompatibility complex, class I, B
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1
HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)
HMGA1 high mobility group AT-hook 1
HMGA2 high mobility group AT-hook 2
HMGB1 high mobility group box 1
HMGN1 high mobility group nucleosome binding domain 1
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
HRAS Harvey rat sarcoma viral oncogene homolog
HSD11B1 hydroxysteroid (11-beta) dehydrogenase 1
HSF1 heat shock transcription factor 1
HSPA4 heat shock 70kDa protein 4
HSPD1 heat shock 60kDa protein 1 (chaperonin)
HSPE1 heat shock 10kDa protein 1
IFI16 interferon, gamma-inducible protein 16
IFNA1 interferon, alpha 1
IFNGR1 interferon gamma receptor 1
IGF1R insulin-like growth factor 1 receptor
INIP INTS3 and NABP interacting protein
INO80 INO80 complex subunit
INTS3 integrator complex subunit 3
IPMK inositol polyphosphate multikinase
IPO7 importin 7
IRF3 interferon regulatory factor 3
IRS2 insulin receptor substrate 2
IRS3P insulin receptor substrate 3, pseudogene
ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
JUN jun proto-oncogene
KCNG3 potassium channel, voltage gated modifier subfamily G, member 3
KCNG4 potassium channel, voltage gated modifier subfamily G, member 4
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1
KCNV2 potassium channel, voltage gated modifier subfamily V, member 2
KDM3A lysine (K)-specific demethylase 3A
KDM5B lysine (K)-specific demethylase 5B
KHDC3L KH domain containing 3-like, subcortical maternal complex member
KIAA0226 KIAA0226
KIF1B kinesin family member 1B
KIN Kin17 DNA and RNA binding protein
KLHL24 kelch-like family member 24
KRAS Kirsten rat sarcoma viral oncogene homolog
KRT1 keratin 1, type II
KRT4 keratin 4, type II
LAMTOR5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
LGALS3 lectin, galactoside-binding, soluble, 3
LIG3 ligase III, DNA, ATP-dependent
LPA lipoprotein, Lp(a)
LRTOMT leucine rich transmembrane and O-methyltransferase domain containing
MAFF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK8 mitogen-activated protein kinase 8
MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2
MAPT microtubule-associated protein tau
MAVS mitochondrial antiviral signaling protein
MCL1 myeloid cell leukemia 1
MCM10 minichromosome maintenance complex component 10
MCM3AP minichromosome maintenance complex component 3 associated protein
MCM7 minichromosome maintenance complex component 7
MCPH1 microcephalin 1
MDC1 mediator of DNA-damage checkpoint 1
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase
MECP2 methyl CpG binding protein 2
MEN1 multiple endocrine neoplasia I
MFI2 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5
MINA MYC induced nuclear antigen
MIP major intrinsic protein of lens fiber
MIR122 microRNA 122
MIR155 microRNA 155
MIR27A microRNA 27a
MIR296 microRNA 296
MIR93 microRNA 93
MIRLET7B microRNA let-7b
MKI67 marker of proliferation Ki-67
MMS22L MMS22-like, DNA repair protein
MPG N-methylpurine-DNA glycosylase
MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
MSH2 mutS homolog 2
MSH6 mutS homolog 6
MT-ND4 NADH dehydrogenase, subunit 4 (complex I)
MT-ND5 NADH dehydrogenase, subunit 5 (complex I)
MT-TI tRNA
MT-TL1 tRNA
MT-TS1 tRNA
MTHFR methylenetetrahydrofolate reductase (NAD(P)H)
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MUS81 MUS81 structure-specific endonuclease subunit
MUTYH mutY homolog
MX1 MX dynamin-like GTPase 1
MYB v-myb avian myeloblastosis viral oncogene homolog
MYLK4 myosin light chain kinase family, member 4
MYP3 myopia 3 (high grade, autosomal dominant)
NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit
NANOG Nanog homeobox
NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase)
NBEAP1 neurobeachin pseudogene 1
NBN nibrin
NCL nucleolin
NCOR1 nuclear receptor corepressor 1
NDST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
NEIL1 nei endonuclease VIII-like 1 (E. coli)
NEIL2 nei endonuclease VIII-like 2 (E. coli)
NEK2 NIMA-related kinase 2
NELFCD negative elongation factor complex member C/D
NELFE negative elongation factor complex member E
NEUROG3 neurogenin 3
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NF2 neurofibromin 2 (merlin)
NFIB nuclear factor I/B
NIPBL Nipped-B homolog (Drosophila)
NLRP2 NLR family, pyrin domain containing 2
NLRP7 NLR family, pyrin domain containing 7
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
NQO1 NAD(P)H dehydrogenase, quinone 1
NRXN1 neurexin 1
NTHL1 nth endonuclease III-like 1 (E. coli)
NUMA1 nuclear mitotic apparatus protein 1
NUP214 nucleoporin 214kDa
NUP98 nucleoporin 98kDa
OBSL1 obscurin-like 1
ODC1 ornithine decarboxylase 1
OPA1 optic atrophy 1 (autosomal dominant)
OTC ornithine carbamoyltransferase
PALB2 partner and localizer of BRCA2
PARK3 Parkinson disease 3 (autosomal dominant, Lewy body)
PARK7 parkinson protein 7
PARP1 poly (ADP-ribose) polymerase 1
PBRM1 polybromo 1
PCBP2 poly(rC) binding protein 2
PCNA proliferating cell nuclear antigen
PDE4D phosphodiesterase 4D, cAMP-specific
PEA15 phosphoprotein enriched in astrocytes 15
PGR progesterone receptor
PHF13 PHD finger protein 13
PLAU plasminogen activator, urokinase
PLEKHA8 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
PLK1 polo-like kinase 1
PLP1 proteolipid protein 1
PML promyelocytic leukemia
PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
PNKP polynucleotide kinase 3'-phosphatase
POLB polymerase (DNA directed), beta
POLG polymerase (DNA directed), gamma
PON1 paraoxonase 1
POU5F1 POU class 5 homeobox 1
PPARG peroxisome proliferator-activated receptor gamma
PPIA peptidylprolyl isomerase A (cyclophilin A)
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D
PPP6C protein phosphatase 6, catalytic subunit
PRDM9 PR domain containing 9
PRDX1 peroxiredoxin 1
PRDX5 peroxiredoxin 5
PRKAB1 protein kinase, AMP-activated, beta 1 non-catalytic subunit
PRKACA protein kinase, cAMP-dependent, catalytic, alpha
PRKCZ protein kinase C, zeta
PRMT5 protein arginine methyltransferase 5
PRNP prion protein
PROX1 prospero homeobox 1
PSEN2 presenilin 2
PTBP1 polypyrimidine tract binding protein 1
PTEN phosphatase and tensin homolog
PTGES3 prostaglandin E synthase 3 (cytosolic)
PTGIS prostaglandin I2 (prostacyclin) synthase
PURA purine-rich element binding protein A
QRFP pyroglutamylated RFamide peptide
RAB11A RAB11A, member RAS oncogene family
RAD18 RAD18 E3 ubiquitin protein ligase
RAD50 RAD50 homolog (S. cerevisiae)
RAD51 RAD51 recombinase
RAD52 RAD52 homolog (S. cerevisiae)
RB1 retinoblastoma 1
RBBP8 retinoblastoma binding protein 8
RECQL RecQ helicase-like
RECQL4 RecQ protein-like 4
RECQL5 RecQ protein-like 5
REST RE1-silencing transcription factor
RMI1 RecQ mediated genome instability 1
RNASE3 ribonuclease, RNase A family, 3
RNF168 ring finger protein 168, E3 ubiquitin protein ligase
RNF169 ring finger protein 169
RNF212 ring finger protein 212
RNF8 ring finger protein 8, E3 ubiquitin protein ligase
RNR2 RNA, ribosomal cluster 2
RPA1 replication protein A1, 70kDa
RPA2 replication protein A2, 32kDa
RPS27 ribosomal protein S27
RSRC1 arginine/serine-rich coiled-coil 1
RUNX2 runt-related transcription factor 2
SASS6 spindle assembly 6 homolog (C. elegans)
SATB1 SATB homeobox 1
SCGB1A1 secretoglobin, family 1A, member 1 (uteroglobin)
SDHD succinate dehydrogenase complex, subunit D, integral membrane protein
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae)
SENP2 SUMO1/sentrin/SMT3 specific peptidase 2
SETD7 SET domain containing (lysine methyltransferase) 7
SETD8 SET domain containing (lysine methyltransferase) 8
SETDB1 SET domain, bifurcated 1
SETMAR SET domain and mariner transposase fusion gene
SETX senataxin
SFTPD surfactant protein D
SHPRH SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase
SIPA1L1 signal-induced proliferation-associated 1 like 1
SIRT1 sirtuin 1
SLC16A5 solute carrier family 16 (monocarboxylate transporter), member 5
SLC22A6 solute carrier family 22 (organic anion transporter), member 6
SLC22A8 solute carrier family 22 (organic anion transporter), member 8
SLPI secretory leukocyte peptidase inhibitor
SMAD7 SMAD family member 7
SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
SMC1A structural maintenance of chromosomes 1A
SMTNL2 smoothelin-like 2
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SOCS3 suppressor of cytokine signaling 3
SPSB1 splA/ryanodine receptor domain and SOCS box containing 1
SRF serum response factor (c-fos serum response element-binding transcription factor)
SSB Sjogren syndrome antigen B (autoantigen La)
STK11 serine/threonine kinase 11
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila)
SYT1 synaptotagmin I
SYT14 synaptotagmin XIV
TBX1 T-box 1
TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)
TCF19 transcription factor 19
TEN1 TEN1 CST complex subunit
TERC telomerase RNA component
TERT telomerase reverse transcriptase
TFAM transcription factor A, mitochondrial
TFB2M transcription factor B2, mitochondrial
TGM6 transglutaminase 6
TMLHE trimethyllysine hydroxylase, epsilon
TONSL tonsoku-like, DNA repair protein
TOP3A topoisomerase (DNA) III alpha
TOPBP1 topoisomerase (DNA) II binding protein 1
TP53 tumor protein p53
TP53AIP1 tumor protein p53 regulated apoptosis inducing protein 1
TP63 tumor protein p63
TP73 tumor protein p73
TREX2 three prime repair exonuclease 2
TRIM28 tripartite motif containing 28
TRIP6 thyroid hormone receptor interactor 6
TRPC2 transient receptor potential cation channel, subfamily C, member 2, pseudogene
TSC2 tuberous sclerosis 2
TSPY1 testis specific protein, Y-linked 1
TTF1 transcription termination factor, RNA polymerase I
TWIST1 twist family bHLH transcription factor 1
U2AF1 U2 small nuclear RNA auxiliary factor 1
U2AF2 U2 small nuclear RNA auxiliary factor 2
UBC ubiquitin C
UBE2M ubiquitin-conjugating enzyme E2M
UBN1 ubinuclein 1
UIMC1 ubiquitin interaction motif containing 1
UNG uracil-DNA glycosylase
UPF1 UPF1 regulator of nonsense transcripts homolog (yeast)
USP20 ubiquitin specific peptidase 20
USP47 ubiquitin specific peptidase 47
VBP1 von Hippel-Lindau binding protein 1
VDR vitamin D (1,25- dihydroxyvitamin D3) receptor
VRK1 vaccinia related kinase 1
WDR3 WD repeat domain 3
WEE1 WEE1 G2 checkpoint kinase
WRN Werner syndrome, RecQ helicase-like
XPC xeroderma pigmentosum, complementation group C
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6
XRN2 5'-3' exoribonuclease 2
YBX1 Y box binding protein 1
ZNF274 zinc finger protein 274
ZRANB3 zinc finger, RAN-binding domain containing 3
ZSCAN10 zinc finger and SCAN domain containing 10