enrichment culture Gene Set

Dataset TISSUES Text-mining Tissue Protein Expression Evidence Scores
Category structural or functional annotations
Type tissue
Description An enrichment culture is a medium with specific and known qualities that favors the growth of a particular microorganism. The enrichment cultures environment will support the growth of a selected microorganism, while inhibiting the growth of others. (BRENDA Tissue and Enzyme Source Ontology, BTO_0003810)
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Genes

145 proteins co-occuring with the tissue enrichment culture in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.

Symbol Name Standardized Value
C16ORF91 chromosome 16 open reading frame 91 2.06638
STX2 syntaxin 2 1.73977
ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 1.57356
USP9X ubiquitin specific peptidase 9, X-linked 1.52617
INF2 inverted formin, FH2 and WH2 domain containing 1.39192
SCRN3 secernin 3 1.31739
MED7 mediator complex subunit 7 1.31153
DSCR3 Down syndrome critical region 3 1.27157
DIABLO diablo, IAP-binding mitochondrial protein 1.26844
STX1A syntaxin 1A (brain) 1.25101
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 1.20467
ZFPL1 zinc finger protein-like 1 1.16914
SDR9C7 short chain dehydrogenase/reductase family 9C, member 7 1.1266
NIT2 nitrilase family, member 2 1.10491
FES FES proto-oncogene, tyrosine kinase 1.1027
FUCA1 fucosidase, alpha-L- 1, tissue 1.09651
DEDD death effector domain containing 1.09076
TNRC6A trinucleotide repeat containing 6A 1.05104
ABHD2 abhydrolase domain containing 2 1.02337
FBRS fibrosin 0.973716
CFB complement factor B 0.969821
TMEM131 transmembrane protein 131 0.940925
CTDSP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 0.938347
ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 0.926764
CLEC3A C-type lectin domain family 3, member A 0.924623
OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 0.913507
CCDC85B coiled-coil domain containing 85B 0.910946
CTDSPL CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 0.901998
CPE carboxypeptidase E 0.898595
CLEC2B C-type lectin domain family 2, member B 0.895195
CLEC10A C-type lectin domain family 10, member A 0.891798
CEACAM3 carcinoembryonic antigen-related cell adhesion molecule 3 0.889253
ABHD14A abhydrolase domain containing 14A 0.880781
KRT86 keratin 86, type II 0.870639
FTSJ1 FtsJ RNA methyltransferase homolog 1 (E. coli) 0.863891
CAT catalase 0.857995
TCOF1 Treacher Collins-Franceschetti syndrome 1 0.855891
SRSF2 serine/arginine-rich splicing factor 2 0.849585
LIN9 lin-9 DREAM MuvB core complex component 0.825686
RFK riboflavin kinase 0.81983
FEN1 flap structure-specific endonuclease 1 0.803961
ZFYVE1 zinc finger, FYVE domain containing 1 0.781063
CD2BP2 CD2 (cytoplasmic tail) binding protein 2 0.774834
RHAG Rh-associated glycoprotein 0.745451
WIBG within bgcn homolog (Drosophila) 0.743801
AURKC aurora kinase C 0.735971
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 0.73062
GP1BA glycoprotein Ib (platelet), alpha polypeptide 0.712549
TMEM11 transmembrane protein 11 0.700262
PPP1R17 protein phosphatase 1, regulatory subunit 17 0.685551
OPLAH 5-oxoprolinase (ATP-hydrolysing) 0.679025
NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 0.675765
MFAP2 microfibrillar-associated protein 2 0.668436
DHPS deoxyhypusine synthase 0.653807
ATG4C autophagy related 4C, cysteine peptidase 0.647721
TBP TATA box binding protein 0.642048
HGD homogentisate 1,2-dioxygenase 0.641643
NME1-NME2 NME1-NME2 readthrough 0.63719
ALLC allantoicase 0.630314
CDT1 chromatin licensing and DNA replication factor 1 0.623446
UBTF upstream binding transcription factor, RNA polymerase I 0.617393
EXO1 exonuclease 1 0.615377
RHOD ras homolog family member D 0.606514
CNOT2 CCR4-NOT transcription complex, subunit 2 0.604502
NMS neuromedin S 0.604502
CBS cystathionine-beta-synthase 0.601686
RNF112 ring finger protein 112 0.597263
DVL2 dishevelled segment polarity protein 2 0.590036
ICT1 immature colon carcinoma transcript 1 0.575616
ACO2 aconitase 2, mitochondrial 0.568025
ARHGEF7 Rho guanine nucleotide exchange factor (GEF) 7 0.561644
NME2 NME/NM23 nucleoside diphosphate kinase 2 0.555671
SHKBP1 SH3KBP1 binding protein 1 0.554478
FLAD1 flavin adenine dinucleotide synthetase 1 0.551298
ERF Ets2 repressor factor 0.547326
ESD esterase D 0.546929
NIT1 nitrilase 1 0.545342
GML glycosylphosphatidylinositol anchored molecule like 0.541773
NBPF8 neuroblastoma breakpoint family, member 8 0.539396
RHD Rh blood group, D antigen 0.534251
NDUFB9 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa 0.529508
SPINT1 serine peptidase inhibitor, Kunitz type 1 0.520041
ALDH5A1 aldehyde dehydrogenase 5 family, member A1 0.516497
PKM pyruvate kinase, muscle 0.508242
RRM2 ribonucleotide reductase M2 0.50471
PRB3 proline-rich protein BstNI subfamily 3 0.50079
CSN1S1 casein alpha s1 0.495701
SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 0.494136
GRIK4 glutamate receptor, ionotropic, kainate 4 0.493745
SLURP1 secreted LY6/PLAUR domain containing 1 0.489838
PDS5B PDS5 cohesin associated factor B 0.482428
KCNK2 potassium channel, two pore domain subfamily K, member 2 0.481648
PAK7 p21 protein (Cdc42/Rac)-activated kinase 7 0.479312
EMP1 epithelial membrane protein 1 0.471151
AK1 adenylate kinase 1 0.470763
MANBA mannosidase, beta A, lysosomal 0.470763
NDN necdin, melanoma antigen (MAGE) family member 0.447961
RAG1 recombination activating gene 1 0.442962
PRM1 protamine 1 0.438356
CA8 carbonic anhydrase VIII 0.433374
TIPARP TCDD-inducible poly(ADP-ribose) polymerase 0.431077
SUMF2 sulfatase modifying factor 2 0.42649
LPP LIM domain containing preferred translocation partner in lipoma 0.407073
ASNS asparagine synthetase (glutamine-hydrolyzing) 0.404039
JMJD6 jumonji domain containing 6 0.396844
TST thiosulfate sulfurtransferase (rhodanese) 0.391931
TRH thyrotropin-releasing hormone 0.389289
BDKRB1 bradykinin receptor B1 0.377996
TNFRSF11A tumor necrosis factor receptor superfamily, member 11a, NFKB activator 0.375368
MSMB microseminoprotein, beta- 0.374993
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.372369
ANO1 anoctamin 1, calcium activated chloride channel 0.371994
CA2 carbonic anhydrase II 0.360782
FAM195A family with sequence similarity 195, member A 0.357802
BBOX1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 0.345188
PRODH proline dehydrogenase (oxidase) 1 0.344449
CES1 carboxylesterase 1 0.342233
PANX1 pannexin 1 0.339282
GP6 glycoprotein VI (platelet) 0.328994
EPHB2 EPH receptor B2 0.316588
PORCN porcupine homolog (Drosophila) 0.315861
ACLY ATP citrate lyase 0.315498
DHDH dihydrodiol dehydrogenase (dimeric) 0.312595
FAM131C family with sequence similarity 131, member C 0.311145
POLI polymerase (DNA directed) iota 0.306805
NBPF10 neuroblastoma breakpoint family, member 10 0.302118
RB1 retinoblastoma 1 0.292436
GFER growth factor, augmenter of liver regeneration 0.289939
PAK6 p21 protein (Cdc42/Rac)-activated kinase 6 0.288158
IRF6 interferon regulatory factor 6 0.279307
MUC5B mucin 5B, oligomeric mucus/gel-forming 0.2779
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 0.277197
MMP11 matrix metallopeptidase 11 0.264353
XDH xanthine dehydrogenase 0.244232
GSS glutathione synthetase 0.242983
ABCC4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 0.241746
PHB2 prohibitin 2 0.23781
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.237216
IVD isovaleryl-CoA dehydrogenase 0.235167
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.233162
MMP10 matrix metallopeptidase 10 0.229299
TES testin LIM domain protein 0.221989
MGAM maltase-glucoamylase 0.218613
GNAS GNAS complex locus 0.215534
PIDD1 p53-induced death domain protein 1 0.214954