endoplasmic reticulum-golgi intermediate compartment Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport. (Gene Ontology, GO_0005793)
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Genes

161 proteins co-occuring with the endoplasmic reticulum-golgi intermediate compartment cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
LMAN1 lectin, mannose-binding, 1 3.00567
MCFD2 multiple coagulation factor deficiency 2 2.11439
RAB2A RAB2A, member RAS oncogene family 1.77275
ERGIC2 ERGIC and golgi 2 1.3363
LMAN1L lectin, mannose-binding, 1 like 1.25706
RAB1A RAB1A, member RAS oncogene family 1.22257
LMAN2 lectin, mannose-binding 2 1.10766
AZIN1 antizyme inhibitor 1 1.09493
STX18 syntaxin 18 1.08323
YIF1A Yip1 interacting factor homolog A (S. cerevisiae) 1.04683
F5 coagulation factor V (proaccelerin, labile factor) 1.03228
CTSZ cathepsin Z 1.02929
STX5 syntaxin 5 1.02032
STX17 syntaxin 17 1.003
DENND6A DENN/MADD domain containing 6A 0.982932
CANX calnexin 0.972263
COPB1 coatomer protein complex, subunit beta 1 0.964549
SLC35C2 solute carrier family 35 (GDP-fucose transporter), member C2 0.963107
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.959748
ZFPL1 zinc finger protein-like 1 0.950665
SEC16A SEC16 homolog A (S. cerevisiae) 0.925135
TM6SF2 transmembrane 6 superfamily member 2 0.881477
MMP27 matrix metallopeptidase 27 0.863528
MAN2A1 mannosidase, alpha, class 2A, member 1 0.862609
ARF1 ADP-ribosylation factor 1 0.839187
GALNT12 polypeptide N-acetylgalactosaminyltransferase 12 0.836892
YIPF5 Yip1 domain family, member 5 0.834597
SEC24B SEC24 family member B 0.833679
DDHD1 DDHD domain containing 1 0.828171
SEC22C SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 0.815322
TMED2 transmembrane emp24 domain trafficking protein 2 0.810276
TGOLN2 trans-golgi network protein 2 0.790106
BCAP29 B-cell receptor-associated protein 29 0.782326
LAMP5 lysosomal-associated membrane protein family, member 5 0.779126
SNX21 sorting nexin family member 21 0.778212
NSF N-ethylmaleimide-sensitive factor 0.771363
CTSC cathepsin C 0.769995
AVL9 AVL9 homolog (S. cerevisiase) 0.769083
CLN8 ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) 0.754983
SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) 0.753623
KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 0.750452
BCAP31 B-cell receptor-associated protein 31 0.745477
ARF4 ADP-ribosylation factor 4 0.731076
SEC13 SEC13 homolog (S. cerevisiae) 0.72258
RAB24 RAB24, member RAS oncogene family 0.692078
SCYL1 SCY1-like 1 (S. cerevisiae) 0.690326
CDSN corneodesmosin 0.665529
SEC31A SEC31 homolog A (S. cerevisiae) 0.660776
FTCD formimidoyltransferase cyclodeaminase 0.648721
SPHAR S-phase response (cyclin related) 0.647003
PSEN1 presenilin 1 0.646574
SEC23IP SEC23 interacting protein 0.634159
SEC31B SEC31 homolog B (S. cerevisiae) 0.632878
LMO4 LIM domain only 4 0.629465
IRX2 iroquois homeobox 2 0.620104
GOLGA2 golgin A2 0.602752
BET1 Bet1 golgi vesicular membrane trafficking protein 0.602331
F8 coagulation factor VIII, procoagulant component 0.601066
DDHD2 DDHD domain containing 2 0.593912
CALR calreticulin 0.592232
RPN2 ribophorin II 0.591392
NAPA N-ethylmaleimide-sensitive factor attachment protein, alpha 0.585942
IRX6 iroquois homeobox 6 0.582594
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.582176
OSBPL9 oxysterol binding protein-like 9 0.579251
ERP44 endoplasmic reticulum protein 44 0.576329
PIEZO1 piezo-type mechanosensitive ion channel component 1 0.575078
SLC35C1 solute carrier family 35 (GDP-fucose transporter), member C1 0.563432
CDKN2A cyclin-dependent kinase inhibitor 2A 0.562187
WLS wntless Wnt ligand secretion mediator 0.560943
CHERP calcium homeostasis endoplasmic reticulum protein 0.558042
COPG2 coatomer protein complex, subunit gamma 2 0.554318
FOXD2 forkhead box D2 0.54771
NAT8 N-acetyltransferase 8 (GCN5-related, putative) 0.539883
CKAP4 cytoskeleton-associated protein 4 0.524294
CABP5 calcium binding protein 5 0.523885
PTPN2 protein tyrosine phosphatase, non-receptor type 2 0.520615
CABP4 calcium binding protein 4 0.518165
ATG14 autophagy related 14 0.515308
CABP2 calcium binding protein 2 0.515308
SNX15 sorting nexin 15 0.511233
IRX3 iroquois homeobox 3 0.502693
SI sucrase-isomaltase (alpha-glucosidase) 0.501881
SURF4 surfeit 4 0.49742
PDIA2 protein disulfide isomerase family A, member 2 0.497015
AMICA1 adhesion molecule, interacts with CXADR antigen 1 0.482064
PMP22 peripheral myelin protein 22 0.477233
AHRR aryl-hydrocarbon receptor repressor 0.476027
SLN sarcolipin 0.458006
TP53 tumor protein p53 0.454019
HLA-B major histocompatibility complex, class I, B 0.452427
ATP2C2 ATPase, Ca++ transporting, type 2C, member 2 0.434591
P4HB prolyl 4-hydroxylase, beta polypeptide 0.429859
PSEN2 presenilin 2 0.429072
ANXA4 annexin A4 0.42082
SHMT1 serine hydroxymethyltransferase 1 (soluble) 0.413382
DCTN2 dynactin 2 (p50) 0.405971
ZIC2 Zic family member 2 0.392001
DGKD diacylglycerol kinase, delta 130kDa 0.385822
BNIP1 BCL2/adenovirus E1B 19kDa interacting protein 1 0.382354
SEC24A SEC24 family member A 0.378122
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.376586
SLC9A3R2 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 0.367771
SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) 0.364331
EVPL envoplakin 0.356324
PEG10 paternally expressed 10 0.355183
PI4K2A phosphatidylinositol 4-kinase type 2 alpha 0.345692
M6PR mannose-6-phosphate receptor (cation dependent) 0.343799
ARFGAP3 ADP-ribosylation factor GTPase activating protein 3 0.342664
STX11 syntaxin 11 0.339261
PPAP2B phosphatidic acid phosphatase type 2B 0.339261
PLA2G6 phospholipase A2, group VI (cytosolic, calcium-independent) 0.320077
COG7 component of oligomeric golgi complex 7 0.310358
STOM stomatin 0.309986
INPP5B inositol polyphosphate-5-phosphatase, 75kDa 0.300311
SAR1B secretion associated, Ras related GTPase 1B 0.296972
ARFGAP2 ADP-ribosylation factor GTPase activating protein 2 0.292897
SH2B3 SH2B adaptor protein 3 0.291787
SEC24C SEC24 family member C 0.283663
TRAPPC9 trafficking protein particle complex 9 0.280349
BACE1 beta-site APP-cleaving enzyme 1 0.27998
DCTN1 dynactin 1 0.277038
EBAG9 estrogen receptor binding site associated, antigen, 9 0.277038
SNX3 sorting nexin 3 0.272633
CYTH1 cytohesin 1 0.259109
TMED10 transmembrane emp24-like trafficking protein 10 (yeast) 0.255107
CCT4 chaperonin containing TCP1, subunit 4 (delta) 0.25438
SEC24D SEC24 family member D 0.249302
DNAJB9 DnaJ (Hsp40) homolog, subfamily B, member 9 0.248216
NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 0.247854
SNX5 sorting nexin 5 0.244601
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 0.24424
SAR1A secretion associated, Ras related GTPase 1A 0.243519
NOTO notochord homeobox 0.241356
CAV1 caveolin 1, caveolae protein, 22kDa 0.240996
ATP2B3 ATPase, Ca++ transporting, plasma membrane 3 0.240636
TRIP11 thyroid hormone receptor interactor 11 0.234891
EPHB1 EPH receptor B1 0.234891
ERO1L ERO1-like (S. cerevisiae) 0.233459
RTN3 reticulon 3 0.227397
GOSR2 golgi SNAP receptor complex member 2 0.225622
ATF6 activating transcription factor 6 0.223497
ITCH itchy E3 ubiquitin protein ligase 0.219969
IFIT1 interferon-induced protein with tetratricopeptide repeats 1 0.210203
RAB32 RAB32, member RAS oncogene family 0.205059
PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 0.196999
USO1 USO1 vesicle transport factor 0.196339
OCA2 oculocutaneous albinism II 0.193394
PEX16 peroxisomal biogenesis factor 16 0.191135
CDK5R1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) 0.187333
XBP1 X-box binding protein 1 0.177439
ZNF185 zinc finger protein 185 (LIM domain) 0.177154
RER1 retention in endoplasmic reticulum sorting receptor 1 0.176305
AATF apoptosis antagonizing transcription factor 0.167125
HAP1 huntingtin-associated protein 1 0.165932
INVS inversin 0.165
ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1 0.1632
HLA-A major histocompatibility complex, class I, A 0.162546
TPPP tubulin polymerization promoting protein 0.160053
INPP5A inositol polyphosphate-5-phosphatase, 40kDa 0.159462
SNX9 sorting nexin 9 0.156863