early phagosome Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A membrane-bounded intracellular vesicle as initially formed upon the ingestion of particulate material by phagocytosis. (Gene Ontology, GO_0032009)
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Genes

45 proteins co-occuring with the early phagosome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
DEF6 differentially expressed in FDCP 6 homolog (mouse) 1.15006
KCTD7 potassium channel tetramerization domain containing 7 1.08933
LAMP1 lysosomal-associated membrane protein 1 0.943059
RAB5A RAB5A, member RAS oncogene family 0.93596
RAB20 RAB20, member RAS oncogene family 0.926543
SNX33 sorting nexin 33 0.923728
MYO1B myosin IB 0.818075
RAB11FIP1 RAB11 family interacting protein 1 (class I) 0.807065
ELMO1 engulfment and cell motility 1 0.789649
PTBP2 polypyrimidine tract binding protein 2 0.778212
RAB5C RAB5C, member RAS oncogene family 0.773188
RAB22A RAB22A, member RAS oncogene family 0.747285
STAB1 stabilin 1 0.726599
PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) 0.698663
STX18 syntaxin 18 0.6638
EEA1 early endosome antigen 1 0.640573
VAV3 vav 3 guanine nucleotide exchange factor 0.586361
SNX9 sorting nexin 9 0.544823
MERTK MER proto-oncogene, tyrosine kinase 0.529618
CTSD cathepsin D 0.497015
BIN1 bridging integrator 1 0.49499
IFI30 interferon, gamma-inducible protein 30 0.476831
USF2 upstream transcription factor 2, c-fos interacting 0.445275
MYO1E myosin IE 0.421997
VAMP1 vesicle-associated membrane protein 1 (synaptobrevin 1) 0.420036
MYO1C myosin IC 0.414946
AMPH amphiphysin 0.37697
PTBP1 polypyrimidine tract binding protein 1 0.334356
NEXN nexilin (F actin binding protein) 0.324576
TAPBP TAP binding protein (tapasin) 0.304027
CD209 CD209 molecule 0.298826
PLA2G2A phospholipase A2, group IIA (platelets, synovial fluid) 0.273367
PKN1 protein kinase N1 0.238478
VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) 0.224204
MRC1 mannose receptor, C type 1 0.222436
ANXA1 annexin A1 0.221025
PI3 peptidase inhibitor 3, skin-derived 0.208825
DECR1 2,4-dienoyl CoA reductase 1, mitochondrial 0.191777
TFRC transferrin receptor 0.191135
PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 0.190495
HLA-B major histocompatibility complex, class I, B 0.169604
RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 0.159268
F2R coagulation factor II (thrombin) receptor 0.158502
RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) 0.158502
FSCN1 fascin actin-bundling protein 1 0.158129