dna bending complex Gene Set

Dataset COMPARTMENTS Text-mining Protein Localization Evidence Scores
Category structural or functional annotations
Type cellular component
Description A protein-DNA complex that contains DNA in combination with a protein which binds to and bends DNA. Often plays a role in DNA compaction. (Gene Ontology, GO_1990104)
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Genes

351 proteins co-occuring with the dna bending complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Symbol Name Standardized Value
HIST2H2AA4 histone cluster 2, H2aa4 1.0142
HIST2H2AA3 histone cluster 2, H2aa3 1.0142
HIST2H2AC histone cluster 2, H2ac 1.01403
H3F3A H3 histone, family 3A 1.00169
H3F3B H3 histone, family 3B (H3.3B) 1.00169
HIST2H3PS2 histone cluster 2, H3, pseudogene 2 1.00071
CENPA centromere protein A 0.76119
HJURP Holliday junction recognition protein 0.733618
HIST1H4I histone cluster 1, H4i 0.694417
HIST1H4K histone cluster 1, H4k 0.694417
HIST1H4H histone cluster 1, H4h 0.694417
HIST1H4D histone cluster 1, H4d 0.694417
HIST1H4E histone cluster 1, H4e 0.694417
HIST2H4A histone cluster 2, H4a 0.694417
HIST2H4B histone cluster 2, H4b 0.694417
HIST1H4F histone cluster 1, H4f 0.694417
HIST1H4A histone cluster 1, H4a 0.694417
HIST1H4B histone cluster 1, H4b 0.694417
HIST1H4C histone cluster 1, H4c 0.694417
HIST1H4J histone cluster 1, H4j 0.694417
HIST4H4 histone cluster 4, H4 0.694124
HIST1H4L histone cluster 1, H4l 0.694124
CENPN centromere protein N 0.614589
H3F3C H3 histone, family 3C 0.565369
CENPC centromere protein C 0.537416
APITD1 apoptosis-inducing, TAF9-like domain 1 0.457075
PARP1 poly (ADP-ribose) polymerase 1 0.449378
CASP3 caspase 3, apoptosis-related cysteine peptidase 0.438674
AIFM3 apoptosis-inducing factor, mitochondrion-associated, 3 0.420036
CENPH centromere protein H 0.363694
H2AFB2 H2A histone family, member B2 0.347335
CENPT centromere protein T 0.345692
H2AFB1 H2A histone family, member B1 0.343042
CENPB centromere protein B, 80kDa 0.337499
HIST1H2AB histone cluster 1, H2ab 0.334733
HIST1H2AE histone cluster 1, H2ae 0.334733
H2AFV H2A histone family, member V 0.33423
H2AFY H2A histone family, member Y 0.333476
H2AFY2 H2A histone family, member Y2 0.332221
H2AFJ H2A histone family, member J 0.331091
HIST1H2AM histone cluster 1, H2am 0.331091
HIST1H2AD histone cluster 1, H2ad 0.331091
HIST1H2AJ histone cluster 1, H2aj 0.331091
HIST1H2AH histone cluster 1, H2ah 0.330966
HIST1H2AG histone cluster 1, H2ag 0.330589
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.314714
RBBP4 retinoblastoma binding protein 4 0.292774
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 0.27459
DNTT DNA nucleotidylexotransferase 0.273
HMGN1 high mobility group nucleosome binding domain 1 0.251114
HIST1H2BA histone cluster 1, H2ba 0.248336
HIST1H2BH histone cluster 1, H2bh 0.243398
HIST1H2BD histone cluster 1, H2bd 0.243398
HIST2H2BF histone cluster 2, H2bf 0.243398
HIST3H2BB histone cluster 3, H2bb 0.243398
HIST1H2BC histone cluster 1, H2bc 0.242917
HIST1H2BF histone cluster 1, H2bf 0.242917
H2AFZ H2A histone family, member Z 0.228938
HMGN2 high mobility group nucleosomal binding domain 2 0.223025
MAP2K5 mitogen-activated protein kinase kinase 5 0.220203
CHD1 chromodomain helicase DNA binding protein 1 0.214482
HDAC9 histone deacetylase 9 0.193394
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.185984
HIST2H3A histone cluster 2, H3a 0.182022
HIST2H3C histone cluster 2, H3c 0.182022
HIST2H3D histone cluster 2, H3d 0.182022
TOP1 topoisomerase (DNA) I 0.178974
PTMS parathymosin 0.171761
KAT2B K(lysine) acetyltransferase 2B 0.168931
HMGN5 high mobility group nucleosome binding domain 5 0.167366
SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 0.165775
HMGB1 high mobility group box 1 0.164846
HMGB2 high mobility group box 2 0.160254
H2AFX H2A histone family, member X 0.159987
KAT2A K(lysine) acetyltransferase 2A 0.159332
HDAC1 histone deacetylase 1 0.158629
NFIC nuclear factor I/C (CCAAT-binding transcription factor) 0.157639
BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 0.154174
GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa 0.153671
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 0.152569
SETD2 SET domain containing 2 0.152248
HMGB3 high mobility group box 3 0.151674
PIR pirin (iron-binding nuclear protein) 0.151544
SRCAP Snf2-related CREBBP activator protein 0.151123
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 0.150439
LGALS4 lectin, galactoside-binding, soluble, 4 0.149257
DNASE1 deoxyribonuclease I 0.148983
HIST1H1A histone cluster 1, H1a 0.147589
TBP TATA box binding protein 0.147561
MAPK7 mitogen-activated protein kinase 7 0.147177
JUN jun proto-oncogene 0.146993
SSRP1 structure specific recognition protein 1 0.146716
TP53 tumor protein p53 0.146334
NFIB nuclear factor I/B 0.14539
NFIA nuclear factor I/A 0.145046
DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta 0.144876
CHAF1A chromatin assembly factor 1, subunit A (p150) 0.144409
EP400 E1A binding protein p400 0.144198
MECP2 methyl CpG binding protein 2 0.143794
ATF1 activating transcription factor 1 0.143691
CETN1 centrin, EF-hand protein, 1 0.143646
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 0.143646
HMGN3 high mobility group nucleosomal binding domain 3 0.143155
SLBP stem-loop binding protein 0.143024
HABP2 hyaluronan binding protein 2 0.142892
CARD17 caspase recruitment domain family, member 17 0.142767
PRC1 protein regulator of cytokinesis 1 0.142707
HDAC2 histone deacetylase 2 0.142635
HIST1H1C histone cluster 1, H1c 0.142621
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.1426
PTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) 0.142304
DNAH8 dynein, axonemal, heavy chain 8 0.142273
HNMT histamine N-methyltransferase 0.142236
HIST1H1B histone cluster 1, H1b 0.142147
GTF3A general transcription factor IIIA 0.14213
CETN2 centrin, EF-hand protein, 2 0.142107
HIST1H3E histone cluster 1, H3e 0.142084
BANF1 barrier to autointegration factor 1 0.142078
HIST1H3C histone cluster 1, H3c 0.142066
HIST1H3H histone cluster 1, H3h 0.142066
CREBBP CREB binding protein 0.141927
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 0.141818
MGAM maltase-glucoamylase 0.141711
HIST1H3A histone cluster 1, H3a 0.141701
EP300 E1A binding protein p300 0.141685
DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha 0.141549
DNASE1L3 deoxyribonuclease I-like 3 0.141455
DNMT1 DNA (cytosine-5-)-methyltransferase 1 0.141434
KAT5 K(lysine) acetyltransferase 5 0.141429
BAX BCL2-associated X protein 0.141429
HIST1H1E histone cluster 1, H1e 0.141408
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.141408
BAZ1B bromodomain adjacent to zinc finger domain, 1B 0.141356
H1FX H1 histone family, member X 0.141125
CTCF CCCTC-binding factor (zinc finger protein) 0.14103
SP6 Sp6 transcription factor 0.140981
DOT1L DOT1-like histone H3K79 methyltransferase 0.140944
CD4 CD4 molecule 0.140824
KDM1A lysine (K)-specific demethylase 1A 0.140796
HSPA4 heat shock 70kDa protein 4 0.14056
CBX3 chromobox homolog 3 0.140479
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 0.140479
CBX5 chromobox homolog 5 0.140467
HDAC3 histone deacetylase 3 0.140361
XAB2 XPA binding protein 2 0.140247
KAT7 K(lysine) acetyltransferase 7 0.140031
SETD1A SET domain containing 1A 0.139999
MEAF6 MYST/Esa1-associated factor 6 0.139968
TAF8 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 0.139948
BPTF bromodomain PHD finger transcription factor 0.139929
POLI polymerase (DNA directed) iota 0.139917
PRDM9 PR domain containing 9 0.139884
SLK STE20-like kinase 0.139865
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.13978
ING4 inhibitor of growth family, member 4 0.139773
TTF1 transcription termination factor, RNA polymerase I 0.139767
MN1 meningioma (disrupted in balanced translocation) 1 0.13976
FOS FBJ murine osteosarcoma viral oncogene homolog 0.139747
NTHL1 nth endonuclease III-like 1 (E. coli) 0.13974
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.13962
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 0.139606
HIST1H1D histone cluster 1, H1d 0.139456
CENPW centromere protein W 0.139421
ANXA5 annexin A5 0.13923
RCOR1 REST corepressor 1 0.139106
TADA2A transcriptional adaptor 2A 0.139018
GTF2B general transcription factor IIB 0.139018
TRAF3 TNF receptor-associated factor 3 0.138935
KLF1 Kruppel-like factor 1 (erythroid) 0.138928
POU2F1 POU class 2 homeobox 1 0.138822
CECR2 cat eye syndrome chromosome region, candidate 2 0.138814
XPA xeroderma pigmentosum, complementation group A 0.138791
ASXL1 additional sex combs like transcriptional regulator 1 0.138706
STRA13 stimulated by retinoic acid 13 0.138652
RCOR2 REST corepressor 2 0.138397
LIG1 ligase I, DNA, ATP-dependent 0.13834
PHF8 PHD finger protein 8 0.138225
HAT1 histone acetyltransferase 1 0.138208
XPC xeroderma pigmentosum, complementation group C 0.138167
ESR1 estrogen receptor 1 0.13815
ARID1A AT rich interactive domain 1A (SWI-like) 0.138091
TIMM8B translocase of inner mitochondrial membrane 8 homolog B (yeast) 0.137903
NFE2 nuclear factor, erythroid 2 0.137886
CASP7 caspase 7, apoptosis-related cysteine peptidase 0.137886
NF1 neurofibromin 1 0.13779
CHD4 chromodomain helicase DNA binding protein 4 0.137685
HIST1H3G histone cluster 1, H3g 0.137667
HIST1H3J histone cluster 1, H3j 0.137667
HIST1H3I histone cluster 1, H3i 0.137667
HIST1H3F histone cluster 1, H3f 0.137667
HIST1H3B histone cluster 1, H3b 0.137667
HIST1H3D histone cluster 1, H3d 0.137667
RNF168 ring finger protein 168, E3 ubiquitin protein ligase 0.13756
PARG poly (ADP-ribose) glycohydrolase 0.13756
DCAF4 DDB1 and CUL4 associated factor 4 0.137533
RCOR3 REST corepressor 3 0.137533
CHRAC1 chromatin accessibility complex 1 0.137506
KDM2A lysine (K)-specific demethylase 2A 0.137341
AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0.137286
FOXA1 forkhead box A1 0.137276
PRAMEF10 PRAME family member 10 0.137239
HIST1H1T histone cluster 1, H1t 0.137202
NAP1L1 nucleosome assembly protein 1-like 1 0.137127
KBTBD11 kelch repeat and BTB (POZ) domain containing 11 0.137098
JADE3 jade family PHD finger 3 0.137098
H2AFB3 H2A histone family, member B3 0.137098
HP1BP3 heterochromatin protein 1, binding protein 3 0.137051
HDAC8 histone deacetylase 8 0.137012
SPTB spectrin, beta, erythrocytic 0.136945
HDAC5 histone deacetylase 5 0.136897
BRD4 bromodomain containing 4 0.136601
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 0.136591
ASPH aspartate beta-hydroxylase 0.136551
APCS amyloid P component, serum 0.136338
BCL2 B-cell CLL/lymphoma 2 0.136296
ELP3 elongator acetyltransferase complex subunit 3 0.136276
ING1 inhibitor of growth family, member 1 0.136276
ATXN7 ataxin 7 0.136265
BRPF1 bromodomain and PHD finger containing, 1 0.136087
DNMT3L DNA (cytosine-5-)-methyltransferase 3-like 0.13583
ATM ATM serine/threonine kinase 0.135666
RNF8 ring finger protein 8, E3 ubiquitin protein ligase 0.135578
CREB1 cAMP responsive element binding protein 1 0.135522
CHD3 chromodomain helicase DNA binding protein 3 0.135466
WDR5 WD repeat domain 5 0.135466
PGR progesterone receptor 0.135454
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.135364
TRRAP transformation/transcription domain-associated protein 0.135272
USP16 ubiquitin specific peptidase 16 0.13525
AADACL3 arylacetamide deacetylase-like 3 0.135192
H1F0 H1 histone family, member 0 0.135192
NAP1L4 nucleosome assembly protein 1-like 4 0.135146
MSL3 male-specific lethal 3 homolog (Drosophila) 0.135122
SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) 0.13511
YY1 YY1 transcription factor 0.13511
EDF1 endothelial differentiation-related factor 1 0.135064
SBF1 SET binding factor 1 0.134981
SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 0.134922
TFF1 trefoil factor 1 0.13491
TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa 0.134778
CASP8 caspase 8, apoptosis-related cysteine peptidase 0.134778
JADE1 jade family PHD finger 1 0.134754
HLX H2.0-like homeobox 0.134718
PCNA proliferating cell nuclear antigen 0.134718
PHF10 PHD finger protein 10 0.134571
RAD54B RAD54 homolog B (S. cerevisiae) 0.13446
BRD2 bromodomain containing 2 0.134335
RNF20 ring finger protein 20, E3 ubiquitin protein ligase 0.13431
JDP2 Jun dimerization protein 2 0.13431
SETD3 SET domain containing 3 0.134234
KMT2A lysine (K)-specific methyltransferase 2A 0.134221
JADE2 jade family PHD finger 2 0.134054
CTCFL CCCTC-binding factor (zinc finger protein)-like 0.133924
PBRM1 polybromo 1 0.133884
TLE3 transducin-like enhancer of split 3 0.133871
BAZ2A bromodomain adjacent to zinc finger domain, 2A 0.133871
WIPF2 WAS/WASL interacting protein family, member 2 0.133832
CHD6 chromodomain helicase DNA binding protein 6 0.133792
CASP9 caspase 9, apoptosis-related cysteine peptidase 0.133792
TGFB1 transforming growth factor, beta 1 0.133752
IFNB1 interferon, beta 1, fibroblast 0.133739
DFFB DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) 0.133427
PADI4 peptidyl arginine deiminase, type IV 0.133427
EED embryonic ectoderm development 0.133358
ASF1A anti-silencing function 1A histone chaperone 0.133275
KRT19 keratin 19, type I 0.133177
ING5 inhibitor of growth family, member 5 0.133163
PRM2 protamine 2 0.133134
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) 0.133078
SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 0.133035
ZBTB32 zinc finger and BTB domain containing 32 0.13292
LIG3 ligase III, DNA, ATP-dependent 0.132906
PRSS50 protease, serine, 50 0.132877
TNF tumor necrosis factor 0.132848
KDM5C lysine (K)-specific demethylase 5C 0.13279
SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 0.132775
RAD51 RAD51 recombinase 0.132731
YEATS4 YEATS domain containing 4 0.132657
BMI1 BMI1 proto-oncogene, polycomb ring finger 0.132657
APOH apolipoprotein H (beta-2-glycoprotein I) 0.132613
COPRS coordinator of PRMT5, differentiation stimulator 0.132568
MKRN3 makorin ring finger protein 3 0.132523
UNG uracil-DNA glycosylase 0.132463
RNF169 ring finger protein 169 0.132448
TAT tyrosine aminotransferase 0.132433
LDB3 LIM domain binding 3 0.132388
CENPL centromere protein L 0.132388
ALB albumin 0.132311
CENPQ centromere protein Q 0.13225
NPM3 nucleophosmin/nucleoplasmin 3 0.132173
KAT8 K(lysine) acetyltransferase 8 0.132173
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 0.132158
BRD1 bromodomain containing 1 0.132126
BCL7C B-cell CLL/lymphoma 7C 0.13208
NCOR1 nuclear receptor corepressor 1 0.131986
CUX1 cut-like homeobox 1 0.131907
MYB v-myb avian myeloblastosis viral oncogene homolog 0.131891
FOXM1 forkhead box M1 0.131843
IRS1 insulin receptor substrate 1 0.131795
PRM1 protamine 1 0.131779
H2BFWT H2B histone family, member W, testis-specific 0.131763
BRCA1 breast cancer 1, early onset 0.131666
SUPT7L suppressor of Ty 7 (S. cerevisiae)-like 0.131552
ING3 inhibitor of growth family, member 3 0.131552
CARM1 coactivator-associated arginine methyltransferase 1 0.131535
FOXA2 forkhead box A2 0.131519
ACTR3B ARP3 actin-related protein 3 homolog B (yeast) 0.131469
SIRT1 sirtuin 1 0.13137
TLR9 toll-like receptor 9 0.131319
TOP3A topoisomerase (DNA) III alpha 0.131302
STK38 serine/threonine kinase 38 0.131184
ZW10 zw10 kinetochore protein 0.131167
PLAU plasminogen activator, urokinase 0.131064
MTA1 metastasis associated 1 0.131047
SPACA5 sperm acrosome associated 5 0.131013
SET SET nuclear proto-oncogene 0.130961
DDB1 damage-specific DNA binding protein 1, 127kDa 0.130734
KDM7A lysine (K)-specific demethylase 7A 0.130627
SCN10A sodium channel, voltage gated, type X alpha subunit 0.130592
SIN3B SIN3 transcription regulator family member B 0.130429
SLC38A2 solute carrier family 38, member 2 0.130375
CHD5 chromodomain helicase DNA binding protein 5 0.130375
DNA2 DNA replication helicase/nuclease 2 0.130302
ASH2L ash2 (absent, small, or homeotic)-like (Drosophila) 0.130191
TAL1 T-cell acute lymphocytic leukemia 1 0.130117
CUL3 cullin 3 0.129985
RCC1 regulator of chromosome condensation 1 0.129929
DPF3 D4, zinc and double PHD fingers, family 3 0.12991
CDK9 cyclin-dependent kinase 9 0.129776
NIPSNAP3B nipsnap homolog 3B (C. elegans) 0.129718
MORC3 MORC family CW-type zinc finger 3 0.129621
KRT18 keratin 18, type I 0.129543
AKT1 v-akt murine thymoma viral oncogene homolog 1 0.129484
MTM1 myotubularin 1 0.129425
TNFRSF1B tumor necrosis factor receptor superfamily, member 1B 0.129143
REST RE1-silencing transcription factor 0.129082
VPRBP Vpr (HIV-1) binding protein 0.129062
RAD50 RAD50 homolog (S. cerevisiae) 0.129
HDAC4 histone deacetylase 4 0.128918
HRAS Harvey rat sarcoma viral oncogene homolog 0.128876
GADD45A growth arrest and DNA-damage-inducible, alpha 0.128855
SIN3A SIN3 transcription regulator family member A 0.128772
CENPU centromere protein U 0.12873
DDB2 damage-specific DNA binding protein 2, 48kDa 0.128538
LRWD1 leucine-rich repeats and WD repeat domain containing 1 0.128452
MGEA5 meningioma expressed antigen 5 (hyaluronidase) 0.128452
NCOA1 nuclear receptor coactivator 1 0.1283
CRP C-reactive protein, pentraxin-related 0.128256
SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae) 0.128235
CDR2 cerebellar degeneration-related protein 2, 62kDa 0.128102
ACTR8 ARP8 actin-related protein 8 homolog (yeast) 0.128079