culture Gene Set

Dataset GeneRIF Biological Term Annotations
Category structural or functional annotations
Type biological term
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Genes

440 genes co-occuring with the biological term culture in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

Symbol Name
ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)
ACAN aggrecan
ACHE acetylcholinesterase (Yt blood group)
ACO1 aconitase 1, soluble
ADAM17 ADAM metallopeptidase domain 17
ADAM9 ADAM metallopeptidase domain 9
ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif, 13
ADCY1 adenylate cyclase 1 (brain)
ADCY3 adenylate cyclase 3
ADCY8 adenylate cyclase 8 (brain)
ADIPOQ adiponectin, C1Q and collagen domain containing
AGER advanced glycosylation end product-specific receptor
AGR2 anterior gradient 2
AGTR1 angiotensin II receptor, type 1
AGTR2 angiotensin II receptor, type 2
AHR aryl hydrocarbon receptor
AKT1 v-akt murine thymoma viral oncogene homolog 1
ALDH1A1 aldehyde dehydrogenase 1 family, member A1
ALDH2 aldehyde dehydrogenase 2 family (mitochondrial)
ALG2 ALG2, alpha-1,3/1,6-mannosyltransferase
ALK anaplastic lymphoma receptor tyrosine kinase
ALOX5 arachidonate 5-lipoxygenase
AMY1A amylase, alpha 1A (salivary)
ANG angiogenin, ribonuclease, RNase A family, 5
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
APOA1 apolipoprotein A-I
APOA2 apolipoprotein A-II
APOE apolipoprotein E
APP amyloid beta (A4) precursor protein
AQP3 aquaporin 3 (Gill blood group)
AR androgen receptor
ASNS asparagine synthetase (glutamine-hydrolyzing)
ATXN1 ataxin 1
AXIN1 axin 1
BCL2 B-cell CLL/lymphoma 2
BDNF brain-derived neurotrophic factor
BGLAP bone gamma-carboxyglutamate (gla) protein
BIRC5 baculoviral IAP repeat containing 5
BMI1 BMI1 proto-oncogene, polycomb ring finger
BMP2 bone morphogenetic protein 2
BMP4 bone morphogenetic protein 4
BMP7 bone morphogenetic protein 7
BPIFA1 BPI fold containing family A, member 1
BRAF B-Raf proto-oncogene, serine/threonine kinase
BRS3 bombesin-like receptor 3
BST2 bone marrow stromal cell antigen 2
C1ORF27 chromosome 1 open reading frame 27
C3 complement component 3
CACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit
CADM1 cell adhesion molecule 1
CALCA calcitonin-related polypeptide alpha
CASP3 caspase 3, apoptosis-related cysteine peptidase
CAV1 caveolin 1, caveolae protein, 22kDa
CCL19 chemokine (C-C motif) ligand 19
CCL2 chemokine (C-C motif) ligand 2
CCL20 chemokine (C-C motif) ligand 20
CCL3 chemokine (C-C motif) ligand 3
CCL4 chemokine (C-C motif) ligand 4
CCL5 chemokine (C-C motif) ligand 5
CCND2 cyclin D2
CCR5 chemokine (C-C motif) receptor 5 (gene/pseudogene)
CD226 CD226 molecule
CD34 CD34 molecule
CD4 CD4 molecule
CD59 CD59 molecule, complement regulatory protein
CD63 CD63 molecule
CDC34 cell division cycle 34
CDC42 cell division cycle 42
CDH1 cadherin 1, type 1, E-cadherin (epithelial)
CDH13 cadherin 13
CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1)
CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1)
CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
CFLAR CASP8 and FADD-like apoptosis regulator
CFTR cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)
CHEK1 checkpoint kinase 1
CHEK2 checkpoint kinase 2
CHGA chromogranin A
CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
CHST10 carbohydrate sulfotransferase 10
CLDN6 claudin 6
CLOCK clock circadian regulator
CMA1 chymase 1, mast cell
COL18A1 collagen, type XVIII, alpha 1
COL1A1 collagen, type I, alpha 1
COL2A1 collagen, type II, alpha 1
COMT catechol-O-methyltransferase
CP ceruloplasmin (ferroxidase)
CRYAB crystallin, alpha B
CSF2 colony stimulating factor 2 (granulocyte-macrophage)
CSF3 colony stimulating factor 3 (granulocyte)
CSH2 chorionic somatomammotropin hormone 2
CTLA4 cytotoxic T-lymphocyte-associated protein 4
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa
CTSL cathepsin L
CTSS cathepsin S
CX3CL1 chemokine (C-X3-C motif) ligand 1
CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
CXCL11 chemokine (C-X-C motif) ligand 11
CXCL12 chemokine (C-X-C motif) ligand 12
CXCL16 chemokine (C-X-C motif) ligand 16
CXCL5 chemokine (C-X-C motif) ligand 5
CXCL8 chemokine (C-X-C motif) ligand 8
CXCL9 chemokine (C-X-C motif) ligand 9
CXCR3 chemokine (C-X-C motif) receptor 3
CXCR4 chemokine (C-X-C motif) receptor 4
CYP19A1 cytochrome P450, family 19, subfamily A, polypeptide 1
CYP26A1 cytochrome P450, family 26, subfamily A, polypeptide 1
CYP2C19 cytochrome P450, family 2, subfamily C, polypeptide 19
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase)
DCX doublecortin
DEFB104A defensin, beta 104A
DEFB4A defensin, beta 4A
DHX29 DEAH (Asp-Glu-Ala-His) box polypeptide 29
DIO3 deiodinase, iodothyronine, type III
DLK1 delta-like 1 homolog (Drosophila)
DLL1 delta-like 1 (Drosophila)
DLL4 delta-like 4 (Drosophila)
DMPK dystrophia myotonica-protein kinase
DPF2 D4, zinc and double PHD fingers family 2
DPYD dihydropyrimidine dehydrogenase
DRD2 dopamine receptor D2
E2F2 E2F transcription factor 2
EDN1 endothelin 1
EDNRB endothelin receptor type B
EFEMP1 EGF containing fibulin-like extracellular matrix protein 1
EGF epidermal growth factor
EGFR epidermal growth factor receptor
EGR1 early growth response 1
ELANE elastase, neutrophil expressed
ELN elastin
EP300 E1A binding protein p300
EPAS1 endothelial PAS domain protein 1
EPO erythropoietin
ERBB4 erb-b2 receptor tyrosine kinase 4
ESR1 estrogen receptor 1
ESR2 estrogen receptor 2 (ER beta)
ETFB electron-transfer-flavoprotein, beta polypeptide
EWSR1 EWS RNA-binding protein 1
EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit
F3 coagulation factor III (thromboplastin, tissue factor)
F5 coagulation factor V (proaccelerin, labile factor)
FASLG Fas ligand (TNF superfamily, member 6)
FBLN5 fibulin 5
FBN1 fibrillin 1
FCER1A Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide
FFAR3 free fatty acid receptor 3
FGF2 fibroblast growth factor 2 (basic)
FGFR3 fibroblast growth factor receptor 3
FIGF c-fos induced growth factor (vascular endothelial growth factor D)
FLCN folliculin
FLI1 Fli-1 proto-oncogene, ETS transcription factor
FMR1 fragile X mental retardation 1
FOXO1 forkhead box O1
FOXO3 forkhead box O3
FOXP3 forkhead box P3
FYN FYN proto-oncogene, Src family tyrosine kinase
GBA glucosidase, beta, acid
GDF5 growth differentiation factor 5
GFER growth factor, augmenter of liver regeneration
GHRL ghrelin/obestatin prepropeptide
GJA1 gap junction protein, alpha 1, 43kDa
GLUL glutamate-ammonia ligase
GMNN geminin, DNA replication inhibitor
GNAS GNAS complex locus
GPR182 G protein-coupled receptor 182
GPSM1 G-protein signaling modulator 1
GRN granulin
GSTP1 glutathione S-transferase pi 1
H19 H19, imprinted maternally expressed transcript (non-protein coding)
H2AFX H2A histone family, member X
HAMP hepcidin antimicrobial peptide
HBEGF heparin-binding EGF-like growth factor
HEY2 hes-related family bHLH transcription factor with YRPW motif 2
HGF hepatocyte growth factor (hepapoietin A; scatter factor)
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
HLA-A major histocompatibility complex, class I, A
HMOX1 heme oxygenase 1
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1
HP haptoglobin
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)
HSPA7 heat shock 70kDa protein 7 (HSP70B)
HSPB1 heat shock 27kDa protein 1
HSPE1 heat shock 10kDa protein 1
HTRA1 HtrA serine peptidase 1
HTT huntingtin
IBSP integrin-binding sialoprotein
ICAM1 intercellular adhesion molecule 1
ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
IDH1 isocitrate dehydrogenase 1 (NADP+), soluble
IDO1 indoleamine 2,3-dioxygenase 1
IFNG interferon, gamma
IGF1 insulin-like growth factor 1 (somatomedin C)
IGF1R insulin-like growth factor 1 receptor
IGFBP1 insulin-like growth factor binding protein 1
IGFBP2 insulin-like growth factor binding protein 2, 36kDa
IGFBP3 insulin-like growth factor binding protein 3
IL10 interleukin 10
IL15 interleukin 15
IL17A interleukin 17A
IL17RC interleukin 17 receptor C
IL18 interleukin 18
IL1A interleukin 1, alpha
IL1B interleukin 1, beta
IL1RN interleukin 1 receptor antagonist
IL2 interleukin 2
IL21 interleukin 21
IL2RA interleukin 2 receptor, alpha
IL3 interleukin 3
IL4 interleukin 4
IL6 interleukin 6
IL6ST interleukin 6 signal transducer
IL7 interleukin 7
IRS1 insulin receptor substrate 1
ITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)
ITGAV integrin, alpha V
ITGAX integrin, alpha X (complement component 3 receptor 4 subunit)
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
ITGB4 integrin, beta 4
ITGB6 integrin, beta 6
ITM2B integral membrane protein 2B
JAG1 jagged 1
KCNH2 potassium channel, voltage gated eag related subfamily H, member 2
KCNMB1 potassium channel subfamily M regulatory beta subunit 1
KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
KLF6 Kruppel-like factor 6
KLRK1 killer cell lectin-like receptor subfamily K, member 1
KRAS Kirsten rat sarcoma viral oncogene homolog
LAMA5 laminin, alpha 5
LEP leptin
LIF leukemia inhibitory factor
LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5
LMNA lamin A/C
LMO2 LIM domain only 2 (rhombotin-like 1)
LPCAT3 lysophosphatidylcholine acyltransferase 3
LRP1 low density lipoprotein receptor-related protein 1
LRRK2 leucine-rich repeat kinase 2
LYZ lysozyme
MAGEB1 melanoma antigen family B1
MAGEB2 melanoma antigen family B2
MAPK1 mitogen-activated protein kinase 1
MAPK14 mitogen-activated protein kinase 14
MAPK3 mitogen-activated protein kinase 3
MAPT microtubule-associated protein tau
MB myoglobin
MBOAT4 membrane bound O-acyltransferase domain containing 4
MCAM melanoma cell adhesion molecule
MCL1 myeloid cell leukemia 1
MET MET proto-oncogene, receptor tyrosine kinase
MFAP5 microfibrillar associated protein 5
MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
MIR146A microRNA 146a
MIR146B microRNA 146b
MIR200C microRNA 200c
MIR221 microRNA 221
MIR222 microRNA 222
MIR299 microRNA 299
MIR375 microRNA 375
MIRLET7A1 microRNA let-7a-1
MIRLET7I microRNA let-7i
MMP11 matrix metallopeptidase 11
MMP12 matrix metallopeptidase 12
MMP2 matrix metallopeptidase 2
MMP7 matrix metallopeptidase 7
MMP9 matrix metallopeptidase 9
MPC1 mitochondrial pyruvate carrier 1
MPC2 mitochondrial pyruvate carrier 2
MPL MPL proto-oncogene, thrombopoietin receptor
MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
MSRA methionine sulfoxide reductase A
MST1 macrophage stimulating 1
MST1R macrophage stimulating 1 receptor
MTOR mechanistic target of rapamycin (serine/threonine kinase)
MUC1 mucin 1, cell surface associated
MUC16 mucin 16, cell surface associated
MUC5AC mucin 5AC, oligomeric mucus/gel-forming
MX1 MX dynamin-like GTPase 1
MYC v-myc avian myelocytomatosis viral oncogene homolog
MYD88 myeloid differentiation primary response 88
NANOG Nanog homeobox
NBN nibrin
NCR3 natural cytotoxicity triggering receptor 3
NDN necdin, melanoma antigen (MAGE) family member
NDRG1 N-myc downstream regulated 1
NDRG2 NDRG family member 2
NEFH neurofilament, heavy polypeptide
NES nestin
NEU1 sialidase 1 (lysosomal sialidase)
NEWENTRY Record to support submission of GeneRIFs for a gene not in Gene (human; man).
NFE2L2 nuclear factor, erythroid 2-like 2
NFKB1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
NGB neuroglobin
NGF nerve growth factor (beta polypeptide)
NOD1 nucleotide-binding oligomerization domain containing 1
NOS2 nitric oxide synthase 2, inducible
NOTCH1 notch 1
NOX4 NADPH oxidase 4
NPPA natriuretic peptide A
NRD1 nardilysin (N-arginine dibasic convertase)
NUCB2 nucleobindin 2
OSM oncostatin M
P4HB prolyl 4-hydroxylase, beta polypeptide
PABPN1 poly(A) binding protein, nuclear 1
PAK1 p21 protein (Cdc42/Rac)-activated kinase 1
PAPPA pregnancy-associated plasma protein A, pappalysin 1
PARP1 poly (ADP-ribose) polymerase 1
PAX4 paired box 4
PCSK1 proprotein convertase subtilisin/kexin type 1
PCSK2 proprotein convertase subtilisin/kexin type 2
PDCD1 programmed cell death 1
PDCD10 programmed cell death 10
PDGFRB platelet-derived growth factor receptor, beta polypeptide
PDHA1 pyruvate dehydrogenase (lipoamide) alpha 1
PDPK1 3-phosphoinositide dependent protein kinase 1
PDPN podoplanin
PDX1 pancreatic and duodenal homeobox 1
PER1 period circadian clock 1
PGF placental growth factor
PI4KA phosphatidylinositol 4-kinase, catalytic, alpha
PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1
PINK1 PTEN induced putative kinase 1
PLA2G1B phospholipase A2, group IB (pancreas)
PLA2G3 phospholipase A2, group III
PLIN2 perilipin 2
PLK1 polo-like kinase 1
PLK3 polo-like kinase 3
POSTN periostin, osteoblast specific factor
POU5F1 POU class 5 homeobox 1
PPARA peroxisome proliferator-activated receptor alpha
PPARGC1A peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
PPIA peptidylprolyl isomerase A (cyclophilin A)
PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D
PPP2R4 protein phosphatase 2A activator, regulatory subunit 4
PRKAA2 protein kinase, AMP-activated, alpha 2 catalytic subunit
PRKG1 protein kinase, cGMP-dependent, type I
PRMT5 protein arginine methyltransferase 5
PSEN1 presenilin 1
PTEN phosphatase and tensin homolog
PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
PTHLH parathyroid hormone-like hormone
PTK2B protein tyrosine kinase 2 beta
PTP4A3 protein tyrosine phosphatase type IVA, member 3
PTPRC protein tyrosine phosphatase, receptor type, C
RAD50 RAD50 homolog (S. cerevisiae)
RARA retinoic acid receptor, alpha
RDH10 retinol dehydrogenase 10 (all-trans)
REST RE1-silencing transcription factor
RHBDL2 rhomboid, veinlet-like 2 (Drosophila)
RHD Rh blood group, D antigen
RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1
RORA RAR-related orphan receptor A
RPS17 ribosomal protein S17
RUNX2 runt-related transcription factor 2
RUVBL1 RuvB-like AAA ATPase 1
RXRA retinoid X receptor, alpha
RXRG retinoid X receptor, gamma
S100A11 S100 calcium binding protein A11
S100A6 S100 calcium binding protein A6
S1PR2 sphingosine-1-phosphate receptor 2
SAFB scaffold attachment factor B
SCNN1B sodium channel, non voltage gated 1 beta subunit
SCNN1G sodium channel, non voltage gated 1 gamma subunit
SEL1L sel-1 suppressor of lin-12-like (C. elegans)
SELL selectin L
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
SFN stratifin
SFTPD surfactant protein D
SHC1 SHC (Src homology 2 domain containing) transforming protein 1
SHOX short stature homeobox
SKP2 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase
SLC2A4 solute carrier family 2 (facilitated glucose transporter), member 4
SLC30A2 solute carrier family 30 (zinc transporter), member 2
SLC32A1 solute carrier family 32 (GABA vesicular transporter), member 1
SLC40A1 solute carrier family 40 (iron-regulated transporter), member 1
SLCO1B1 solute carrier organic anion transporter family, member 1B1
SLCO1B3 solute carrier organic anion transporter family, member 1B3
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
SNCA synuclein, alpha (non A4 component of amyloid precursor)
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5)
SNRPN small nuclear ribonucleoprotein polypeptide N
SOD1 superoxide dismutase 1, soluble
SORT1 sortilin 1
SOX2 SRY (sex determining region Y)-box 2
SPP1 secreted phosphoprotein 1
SPTA1 spectrin, alpha, erythrocytic 1
SRSF1 serine/arginine-rich splicing factor 1
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor)
STIL SCL/TAL1 interrupting locus
STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase
SUMO1 small ubiquitin-like modifier 1
TAL1 T-cell acute lymphocytic leukemia 1
TBP TATA box binding protein
TEK TEK tyrosine kinase, endothelial
TERT telomerase reverse transcriptase
TFF3 trefoil factor 3 (intestinal)
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
TGFB1 transforming growth factor, beta 1
TGFB2 transforming growth factor, beta 2
TGFB3 transforming growth factor, beta 3
TGFBR1 transforming growth factor, beta receptor 1
TGM1 transglutaminase 1
TGM2 transglutaminase 2
TGM3 transglutaminase 3
TH tyrosine hydroxylase
THBD thrombomodulin
TIMP3 TIMP metallopeptidase inhibitor 3
TLR5 toll-like receptor 5
TLX1 T-cell leukemia homeobox 1
TMPRSS11E transmembrane protease, serine 11E
TMPRSS13 transmembrane protease, serine 13
TNF tumor necrosis factor
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
TNFRSF1A tumor necrosis factor receptor superfamily, member 1A
TNFSF10 tumor necrosis factor (ligand) superfamily, member 10
TNFSF11 tumor necrosis factor (ligand) superfamily, member 11
TP53 tumor protein p53
TPBG trophoblast glycoprotein
TRIM62 tripartite motif containing 62
TSC2 tuberous sclerosis 2
TTR transthyretin
TXN thioredoxin
UBE2Z ubiquitin-conjugating enzyme E2Z
UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
UCN urocortin
UCP3 uncoupling protein 3 (mitochondrial, proton carrier)
VCAM1 vascular cell adhesion molecule 1
VCAN versican
VEGFA vascular endothelial growth factor A
VNN2 vanin 2
VWF von Willebrand factor
WT1 Wilms tumor 1
WWP1 WW domain containing E3 ubiquitin protein ligase 1
XBP1 X-box binding protein 1
XDH xanthine dehydrogenase
ZDHHC17 zinc finger, DHHC-type containing 17
ZG16B zymogen granule protein 16B